TCONS_00021454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021454
Unique NameTCONS_00021454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021454 ID=TCONS_00021454|Name=TCONS_00021454|organism=Clytia hemisphaerica|type=transcript|length=684bp
gcgatatagagccgtacatcaactatcgactttgttttgtatcatttcac
ttaccgtcgccctcgatatccaccgatacataaactcggtaatgacAACG
GTTAGAATGAACATTCCAGACACAGTATTgttaatagcgagtttatgtat
gtgtgtttttcagcaacggagacggtaaggttctaatttgactacaTCCT
GGTCAACTGAGGATGACGGTGAATCTGCACTTtaaccgtcctcgattttg
tgggtcagaactgcgggtttttccaaatcgcttcagtcactctaccgtcc
tcaaaagtgcaaatacataaactcggtacttCCAGTCACAGTATTATTGT
TAATTTTGTATTGCAGACGGCGGATACAAAACAAAACGAAACTATCGAAG
CAGCTCAGGGGCTAAACGGAAACCCATTTTACAGATCTACAACAAGTTAT
GCGAAGTTGTTGCACTTCTTAGTGATCTAGTTTGTCTTGAATCACTCACT
GATTCTATTATACTGAAAATCTCTCAGATCGGAATTGCGCCTTTCTTCGT
TGAAAACGTCAATATATTACAATTGGAGGCGTTGAAAGTGGCGAGAACTG
TCTTTAGAGATTACGTCAAGCATCGAGATTTGATTCTGGATGATATACTG
GCTTCATTGGCTCGCCTTCCGACCAACAAACGCA
Run BLAST on NCBI

transcript from alignment at sc0000386:249397..250080+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021454 ID=TCONS_00021454|Name=TCONS_00021454|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at sc0000386:249397..250080+ (Clytia hemisphaerica)
gcgatatagagccgtacatcaactatcgactttgttttgtatcatttcac
ttaccgtcgccctcgatatccaccgatacataaactcggtaatgacAACG
GTTAGAATGAACATTCCAGACACAGTATTgttaatagcgagtttatgtat
gtgtgtttttcagcaacggagacggtaaggttctaatttgactacaTCCT
GGTCAACTGAGGATGACGGTGAATCTGCACTTtaaccgtcctcgattttg
tgggtcagaactgcgggtttttccaaatcgcttcagtcactctaccgtcc
tcaaaagtgcaaatacataaactcggtacttCCAGTCACAGTATTATTGT
TAATTTTGTATTGCAGACGGCGGATACAAAACAAAACGAAACTATCGAAG
CAGCTCAGGGGCTAAACGGAAACCCATTTTACAGATCTACAACAAGTTAT
GCGAAGTTGTTGCACTTCTTAGTGATCTAGTTTGTCTTGAATCACTCACT
GATTCTATTATACTGAAAATCTCTCAGATCGGAATTGCGCCTTTCTTCGT
TGAAAACGTCAATATATTACAATTGGAGGCGTTGAAAGTGGCGAGAACTG
TCTTTAGAGATTACGTCAAGCATCGAGATTTGATTCTGGATGATATACTG
GCTTCATTGGCTCGCCTTCCGACCAACAAACGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012025XLOC_012025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021454-exon-sc0000386-1491911889:249397..250080TCONS_00021454-exon-sc0000386-1491911889:249397..250080Clytia hemisphaericaexon
TCONS_00021454-exon-sc0000386-1510915933:249397..250080TCONS_00021454-exon-sc0000386-1510915933:249397..250080Clytia hemisphaericaexon
TCONS_00021454-exon-sc0000386-1575043694:249397..250080TCONS_00021454-exon-sc0000386-1575043694:249397..250080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:249397..250080 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.869609	0.930381	1.99243	3.5147	2.41757	1.94765	2.68049	3.97632	0.411195	0.988259	1.37543	1.14075	1.06343	1.16593	1.00526	0.316069	1.59265	1.65338	0.772563	1.90959	2.67438	2.40109	0.430807	0.512539	2.68972	2.41481	0.86874	0.857672	1.3491	1.41578
Blast
[Close]
BLAST of TCONS_00021454 vs. Swiss-Prot (Human)
Match: NIPBL (Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.166e-17
Identity = 53/106 (50.00%), Postives = 78/106 (73.58%), Query Frame = 3 
Query:  369 GGYKTKRNYRSS-SGAKRKPILQIYNKLCEVVALLSDLVCLESLTDSIILKISQIGIAPFFVENVNILQLEALKVARTVFRDYVKHXXXXXXXXXXXXXXXPTNKR 683
            GG  + +  R+  S  K++ I+ +YNK+C++V+ LS+L+ ++ LTD+ IL++S +GI PFFVENV+ LQL A+K+   VF  Y KHR LIL++I  SLARLPT+KR
Sbjct: 1363 GGLLSSKAKRAKCSTHKQRVIVMLYNKVCDIVSSLSELLEIQLLTDTTILQVSSMGITPFFVENVSELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKR 1468
The following BLAST results are available for this feature:
BLAST of TCONS_00021454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NIPBL7.166e-1750.00Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=... [more]
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