TCONS_00021448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021448
Unique NameTCONS_00021448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021448 ID=TCONS_00021448|Name=TCONS_00021448|organism=Clytia hemisphaerica|type=transcript|length=1826bp
NNGCGGAATGGGTGGTATGCCTCCTCAACAAATGGGTGGTATGCAAAATC
CTCAGCAAGCACCAAACCAAAATGTGCAGTATCCAGCACAAGGCACACAT
GTAGAAAACCCTAAGGTTGATTTCTTGCGAGATAAATACATGGTAAAGAA
CAGCCAAATCAACCTCTTCGCTAATCTATTGCTGAATTATTTTGACGACA
GTGATGGTGATATCAAACTAAGAGAAAAAGTGGTTGAAAAAGGAGACAAA
GATATACAAGTTGGTAAAATCCTTGAAGCTGAAACCTCTTTTAATATGAT
GCAAAAGAATATTAAAGGTATGGACGCTGGAGATCACAAAACAACGAAAA
ACCAACTACTGAGATTGATTGACAATGCCCTCAAAACAATTGAAGGAATC
CAGAAGCTTCCTGAAAGCGTTGCAACGATTCAAAAACTCTTCAATCAagc
agaaaaaatcatttcacaATCAGACACGATCGAATCAAGTTTAAAAGTCA
ATGCAGGAATCTCTCAATTTAATAATCCAAATCCAACTCTACCACCATCA
CAGGCACCATCAGGCAGCTCTGGCGATCTCTCTCAAACCATGAATGATAA
TGCTCACAAAAAGGTTGAAGCCTATCACTCACAATTGGATTCTCTTCGAA
TTCGcgctgaagaagaaaaacagcGGTTTAATGCATCACGGCAAGTTTTA
TCTGGAGAGATGAGGAagttagaaaatttcaaaagtagAGATGCAACGAG
TCTTCAAATGATCGAAGTCTTAAAGCAAGAAAAGATTGCACTTACTCAAG
TCAAAGAAAGCTGGGCTGACCTTGTTCAATTTTTTACCTCAATGTCCAAC
TTAATCAATTCAACACTGGCTCCTTCATTGAATATGTTTGTTGCTGACTC
AGAGAGAGTCGCTAAATCCAAATCAGTCAAGAACATGGCAATAGAGGTCG
TATACCAAACAGCTTATCAAGTAGTCAAAGTCAACCATGCTGTCAACAAT
CTTGCTGGCTCGTATAAAGAAATTTCACAGAAATATCTCATACCGTTGTG
TTCAAAGTTGGATGAAATCCTATTCTTAAAGCAAGGAAAGCTCGAAAAAT
GGAGATTGGAATTATGTGAAGAATGCAGAAAAGCTCATGAAGACATCGAG
AGAATAGTAGACAAGCACCACGAGGAGTTTCTTGCAAACTGCCACAAGAA
AACATCAGCAATCGATACAGAGATGAGGGCAATCGCACCTATTACAGAAG
AGAAGAGGAAACAGATCCAAGCAGATGCAGAAAAAATGGTAGAAGGAAAA
GAacttgATATTTAATCTTTTTATAAACTTGACTTGTAGATACCACTaag
attttctgtaaaatataTGCCTTCGGTCGGTAACATAAACTTCTTGAAAT
CTGGGTCTggtgtaatatcaaaatataatgATATGAATCATTAATAATCA
ATTCTGAAAAGGTGACTTTCGCTTCAGGGGAGAAGGGAGAGTTAGATTCA
TGACAAGTTCTCAACTTTTCAAACCTCTACTTGTACCGCAGAAAATTGCA
GATttaattgtttgtttgtttttttttcgatccGACTGGGGGCACATAAT
TAAAACCGTATATGGTAGATCAAATTTTTAGACCATTAGAATAGTCACCT
ATGACGCTGAAGCTTGTCTCGCGCCCGCTACGTTTGCTTAGCAtagttag
attttttttctcgattattatttttatcatcattattatCGACTAATTTC
CCCCATTTGTGATTACGAAATGAATGTCCTACAATCTATCAAATACCTTG
AGGGTCCCCTCGCGGGATAAGACTTG
Run BLAST on NCBI

protein sequence of TCONS_00021448-protein

>TCONS_00021448-protein ID=TCONS_00021448-protein|Name=TCONS_00021448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
XGMGGMPPQQMGGMQNPQQAPNQNVQYPAQGTHVENPKVDFLRDKYMVKN
SQINLFANLLLNYFDDSDGDIKLREKVVEKGDKDIQVGKILEAETSFNMM
QKNIKGMDAGDHKTTKNQLLRLIDNALKTIEGIQKLPESVATIQKLFNQA
EKIISQSDTIESSLKVNAGISQFNNPNPTLPPSQAPSGSSGDLSQTMNDN
AHKKVEAYHSQLDSLRIRAEEEKQRFNASRQVLSGEMRKLENFKSRDATS
LQMIEVLKQEKIALTQVKESWADLVQFFTSMSNLINSTLAPSLNMFVADS
ERVAKSKSVKNMAIEVVYQTAYQVVKVNHAVNNLAGSYKEISQKYLIPLC
SKLDEILFLKQGKLEKWRLELCEECRKAHEDIERIVDKHHEEFLANCHKK
TSAIDTEMRAIAPITEEKRKQIQADAEKMVEGKELDI
Run BLAST on NCBI

transcript from alignment at sc0000386:178837..180843+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021448 ID=TCONS_00021448|Name=TCONS_00021448|organism=Clytia hemisphaerica|type=transcript|length=2007bp|location=Sequence derived from alignment at sc0000386:178837..180843+ (Clytia hemisphaerica)
NNGCGGAATGGGTGGTATGCCTCCTCAACAAATGGGTGGTATGCAAAATC
CTCAGCAAGCACCAAACCAAAATGTGCAGTATCCAGCACAAGGCACACAT
GTAGAAAACCCTAAGGTTGATTTCTTGCGAGATAAATACATGGTAAAGAA
CAGCCAAATCAACCTCTTCGCTAATCTATTGCTGAATTATTTTGACGACA
GTGATGGTGATATCAAACTAAGAGAAAAAGTGGTTGAAAAAGGAGACAAA
GATATACAAGTTGGTAAAATCCTTGAAGCTGAAACCTCTTTTAATATGAT
GCAAAAGAATATTAAAGGTATGGACGCTGGAGATCACAAAACAACGAAAA
ACCAACTACTGAGATTGATTGACAATGCCCTCAAAACAATTGAAGGAATC
CAGAAGCTTCCTGAAAGCGTTGCAACGATTCAAAAACTCTTCAATCAagc
agaaaaaatcatttcacaATCAGACACGATCGAATCAAGTTTAAAAGTCA
ATGCAGGAATCTCTCAATTTAATAATCCAAATCCAACTCTACCACCATCA
CAGGCACCATCAGGCAGCTCTGGCGATCTCTCTCAAACCATGAATGATAA
TGCTCACAAAAAGGTTGAAGCCTATCACTCACAATTGGATTCTCTTCGAA
TTCGcgctgaagaagaaaaacagcGGTTTAATGCATCACGGCAAGTTTTA
TCTGGAGAGATGAGGAagttagaaaatttcaaaagtagAGATGCAACGAG
TCTTCAAATGATCGAAGTCTTAAAGCAAGAAAAGATTGCACTTACTCAAG
TCAAAGAAAGCTGGGCTGACCTTGTTCAATTTTTTACCTCAATGTCCAAC
TTAATCAATTCAACACTGGCTCCTTCATTGAATATGTTTGTTGCTGACTC
AGAGAGAGTCGCTAAATCCAAATCAGTCAAGAACATGGCAATAGAGGTCG
TATACCAAACAGCTTATCAAGTAGTCAAAGTCAACCATGCTGTCAACAAT
CTTGCTGGCTCGTATAAAGAAATTTCACAGAAATATCTCATACCGTTGTG
TTCAAAGTTGGATGAAATCCTATTCTTAAAGCAAGGAAAGCTCGAAAAAT
GGAGATTGGAATTATGTGAAGAATGCAGAAAAGCTCATGAAGACATCGAG
AGAATAGTAGACAAGCACCACGAGGAGTTTCTTGCAAACTGCCACAAGAA
AACATCAGCAATCGATACAGAGATGAGGGCAATCGCACCTATTACAGAAG
AGAAGAGGAAACAGATCCAAGCAGATGCAGAAAAAATGGTAGAAGGAAAA
GAacttgattttgaattttaaatcaCTTTTGACTGACTTTGAGACATTCA
attgttaaaataaaacaaatcaacTTTATTGATCATTTACAAgaagtttt
cgaaaaaaacgTTCATAGGTCTCTTTAAAAGttgacagtgactttcaatT
TAATAGTTTTGATAACATTTCCAATTAGAGATCACTACATATTTAATCTT
TTTATAAACTTGACTTGTAGATACCACTaagattttctgtaaaatataTG
CCTTCGGTCGGTAACATAAACTTCTTGAAATCTGGGTCTggtgtaatatc
aaaatataatgATATGAATCATTAATAATCAATTCTGAAAAGGTGACTTT
CGCTTCAGGGGAGAAGGGAGAGTTAGATTCATGACAAGTTCTCAACTTTT
CAAACCTCTACTTGTACCGCAGAAAATTGCAGATttaattgtttgtttgt
ttttttttcgatccGACTGGGGGCACATAATTAAAACCGTATATGGTAGA
TCAAATTTTTAGACCATTAGAATAGTCACCTATGACGCTGAAGCTTGTCT
CGCGCCCGCTACGTTTGCTTAGCAtagttagattttttttctcgattatt
atttttatcatcattattatCGACTAATTTCCCCCATTTGTGATTACGAA
ATGAATGTCCTACAATCTATCAAATACCTTGAGGGTCCCCTCGCGGGATA
AGACTTG

Coding sequence (CDS) from alignment at sc0000386:178837..180843+

>TCONS_00021448 ID=TCONS_00021448|Name=TCONS_00021448|organism=Clytia hemisphaerica|type=CDS|length=2628bp|location=Sequence derived from alignment at sc0000386:178837..180843+ (Clytia hemisphaerica)
NGCGGAATGGGTGGTATGCCTCCTCAACAAATGGGTGGTATGCAAAATCC
TCAGCAAGCACCAAACCAAAATGTGCAGTATCCAGCACAAGGCACACATG
TAGAAAACCCTAAGGTTGATTTCTTGCGAGATAAATACATGGTAAAGAAC
AGCCAAATCAACCTCTTCGCTAATCTATTGCTGAATTATTTTGACGACAG
TGATGGTGATATCAAACTAAGAGAAAAAGTGGTTGAAAAAGGAGACAAAG
ATATACAAGTTGGTAAAATCCTTGAAGCTGAAACCTCTTTTAATATGATG
CAAAAGAATATTAAAGGTATGGACGCTGGAGATCACAAAACAACGAAAAA
CCAACTACTGAGATTGATTGACAATGCCCTCAAAACAATTGAAGGAATCC
AGAAGCTTCCTGAAAGCGTTGCAACGATTCAAAAACTCTTCAATCAagca
gaaaaaatcatttcacaATCAGACACGATCGAATCAAGTTTAAAAGTCAA
TGCAGGAATCTCTCAATTTAATAATCCAAATCCAACTCTACCACCATCAC
AGGCACCATCAGGCAGCTCTGGCGATCTCTCTCAAACCATGAATGATAAT
GCTCACAAAAAGGTTGAAGCCTATCACTCACAATTGGATTCTCTTCGAAT
TCGcgctgaagaagaaaaacagcGGTTTAATGCATCACGGCAAGTTTTAT
CTGGAGAGATGAGGAagttagaaaatttcaaaagtagAGATGCAACGAGT
CTTCAAATGATCGAAGTCTTAAAGCAAGAAAAGATTGCACTTACTCAAGT
CAAAGAAAGCTGGGCTGACCTTGTTCAATTTTTTACCTCAATGTCCAACT
TAATCAATTCAACACTGGCTCCTTCATTGAATATGTTTGTTGCTGACTCA
GAGAGAGTCGCTAAATCCAAATCAGTCAAGAACATGGCAATAGAGGTCGT
ATACCAAACAGCTTATCAAGTAGTCAAAGTCAACCATGCTGTCAACAATC
TTGCTGGCTCGTATAAAGAAATTTCACAGAAATATCTCATACCGTTGTGT
TCAAAGTTGGATGAAATCCTATTCTTAAAGCAAGGAAAGCTCGAAAAATG
GAGATTGGAATTATGTGAAGAATGCAGAAAAGCTCATGAAGACATCGAGA
GAATAGTAGACAAGCACCACGAGGAGTTTCTTGCAAACTGCCACAAGAAA
ACATCAGCAATCGATACAGAGATGAGGGCAATCGCACCTATTACAGAAGA
GAAGAGGAAACAGATCCAAGCAGATGCAGAAAAAATGGTAGAAGGAAAAG
AacttgATATTTAANGCGGAATGGGTGGTATGCCTCCTCAACAAATGGGT
GGTATGCAAAATCCTCAGCAAGCACCAAACCAAAATGTGCAGTATCCAGC
ACAAGGCACACATGTAGAAAACCCTAAGGTTGATTTCTTGCGAGATAAAT
ACATGGTAAAGAACAGCCAAATCAACCTCTTCGCTAATCTATTGCTGAAT
TATTTTGACGACAGTGATGGTGATATCAAACTAAGAGAAAAAGTGGTTGA
AAAAGGAGACAAAGATATACAAGTTGGTAAAATCCTTGAAGCTGAAACCT
CTTTTAATATGATGCAAAAGAATATTAAAGGTATGGACGCTGGAGATCAC
AAAACAACGAAAAACCAACTACTGAGATTGATTGACAATGCCCTCAAAAC
AATTGAAGGAATCCAGAAGCTTCCTGAAAGCGTTGCAACGATTCAAAAAC
TCTTCAATCAagcagaaaaaatcatttcacaATCAGACACGATCGAATCA
AGTTTAAAAGTCAATGCAGGAATCTCTCAATTTAATAATCCAAATCCAAC
TCTACCACCATCACAGGCACCATCAGGCAGCTCTGGCGATCTCTCTCAAA
CCATGAATGATAATGCTCACAAAAAGGTTGAAGCCTATCACTCACAATTG
GATTCTCTTCGAATTCGcgctgaagaagaaaaacagcGGTTTAATGCATC
ACGGCAAGTTTTATCTGGAGAGATGAGGAagttagaaaatttcaaaagta
gAGATGCAACGAGTCTTCAAATGATCGAAGTCTTAAAGCAAGAAAAGATT
GCACTTACTCAAGTCAAAGAAAGCTGGGCTGACCTTGTTCAATTTTTTAC
CTCAATGTCCAACTTAATCAATTCAACACTGGCTCCTTCATTGAATATGT
TTGTTGCTGACTCAGAGAGAGTCGCTAAATCCAAATCAGTCAAGAACATG
GCAATAGAGGTCGTATACCAAACAGCTTATCAAGTAGTCAAAGTCAACCA
TGCTGTCAACAATCTTGCTGGCTCGTATAAAGAAATTTCACAGAAATATC
TCATACCGTTGTGTTCAAAGTTGGATGAAATCCTATTCTTAAAGCAAGGA
AAGCTCGAAAAATGGAGATTGGAATTATGTGAAGAATGCAGAAAAGCTCA
TGAAGACATCGAGAGAATAGTAGACAAGCACCACGAGGAGTTTCTTGCAA
ACTGCCACAAGAAAACATCAGCAATCGATACAGAGATGAGGGCAATCGCA
CCTATTACAGAAGAGAAGAGGAAACAGATCCAAGCAGATGCAGAAAAAAT
GGTAGAAGGAAAAGAacttgATATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012023XLOC_012023Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021448-proteinTCONS_00021448-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021448-exon-sc0000386-1491911889:178837..180143TCONS_00021448-exon-sc0000386-1491911889:178837..180143Clytia hemisphaericaexon
TCONS_00021448-exon-sc0000386-1510915933:178837..180143TCONS_00021448-exon-sc0000386-1510915933:178837..180143Clytia hemisphaericaexon
TCONS_00021448-exon-sc0000386-1575043694:178837..180143TCONS_00021448-exon-sc0000386-1575043694:178837..180143Clytia hemisphaericaexon
TCONS_00021448-exon-sc0000386-1491911889:180325..180843TCONS_00021448-exon-sc0000386-1491911889:180325..180843Clytia hemisphaericaexon
TCONS_00021448-exon-sc0000386-1510915933:180325..180843TCONS_00021448-exon-sc0000386-1510915933:180325..180843Clytia hemisphaericaexon
TCONS_00021448-exon-sc0000386-1575043694:180325..180843TCONS_00021448-exon-sc0000386-1575043694:180325..180843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:178837..180843 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0626207	0.103376	0.041194	0	0	0	0	0	0	0.0458028	0	0	0.0232395	0.0671433	0	0	11.0913	7.75266	0	0	31.7575	31.076	2.06486	2.88203	5.097	5.02198	3.70363	3.24493	0.1834	0.151352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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