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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021447 ID=TCONS_00021447|Name=TCONS_00021447|organism=Clytia hemisphaerica|type=transcript|length=1577bp
aatttctttaaaataagaTTCTAATCCTTGATATAAGAATAGAGATTATA
ATGGGAAAGTGCAATGTCTGTGACCAGCCAGATTCAAATAGATGCAGTCA
ATGTCAAACAGTATATTACTGTTCTAAAGAATGTCAGGTTTCTGATTGGA
AAAACCACAAGAAACGATGCAAAGAAATCAGCAAAGAGAAAAAGGCTACC
CAAGAAGCGACGAACAGCTCTTTTGAACAGcagattttatcatttttgac
CACGAAACCTTCCagcaatttcaaaatatcagaggAATATAAAAGACGCT
ATTCTATTGATCGAGATGATTATTCTGCACTCAAGACAAAGGAAAACGTT
GCatcttttttgttatttaataTCAAAAGCGGAAAACCCAGCATGCAATG
CGCAGAAAGTTGTGATTTCACTAGTCGTGAAAGTATCCTGAAAAGATGGG
GACCAAACATAGCAGATGGAGAGCGTTTAAGTAATTTTCTTGAAGACCCT
CGAAGGAGATTCGGAGATATTTACGAGCGCCTTGTTCGCCCCAACTATGC
GACCAATTTATTTCAAACAATGCGAAATTCAACCATAACCAATCGAACTT
ATGAATTCGGTCGGACGTATGTTGGGTTCGGATTCGTTGATCTGTTCCAA
TTAGCCTGGGGTAAATACAAAGATACTTTACAGGAGAGATTGGCTTTCTA
TGGTTATGATTCAAACCAATTTACGACTTTGAGAAGCAAAATGATCTATG
GTATTATGAAGTACTTCAAGGAAGATGAAATCAGTACTTCAAGTTTACTA
CAAATCTGGTTTTCATCATGCTGGAGCAGGGAAACTGAGAAGGCGTTCCG
TTTAGTATCGCAGGATGCTTTGAAGAATCCAGACAAATATCAACTCCAGT
CTGGTGATGCTGACATAATCCAAAAATGGCTCAGATATAAAATCTCTTTG
GATGATGCGAAATCAAAATTCTCTAGAGAAATCAAATCAGTCGACAGAGA
CGCGCCTTTTGAAGCTATTTGGAGTATGAAACTTGAGGAAGACCGAGTAA
AATTTTTGAGGTACCTTTACACGGGCATTATCTTTGTGGATGAGTCTAAA
ATTTCAACTGGCAATCCAACAATGTTTTATGAAAGCCCAAATAATAAAAG
GGTGACCGAGGAAAGTTTTTTCCAGAGCATCAATCTTTTGGCATCACAGT
TTGAAGTTGGGCGATCAAATCATAAGACAATGCATGAATTGATTATTTCT
TGCACTCTGGATGTCATGACAGGATTCAGAGCATTGATCAAGAGTGGCAA
CATTCAATGCTATTTGGAAACTAAATTTATCGACCCTATAGATCTATCTT
TCGCACAGCAAATCAAATTGCTTTCACCTCTCGGAATCAACTGGTCAAAT
ATTCCAGATTACATGAAGCCAAAGGAGTTTATCAAATTCGCCAAGGCTTG
CTCAGTAGATGATACCATCCATTATCTACATTTTATGAATTGGGCTGAAT
TTGTGCTTGGTGCGTGTCACGTTGACTGGATGTTCAAGCAAGAAGAATGT
ATTAGAAAatgcaaaaatctaaaaaag Run BLAST on NCBI protein sequence of TCONS_00021447-protein >TCONS_00021447-protein ID=TCONS_00021447-protein|Name=TCONS_00021447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MGKCNVCDQPDSNRCSQCQTVYYCSKECQVSDWKNHKKRCKEISKEKKAT
QEATNSSFEQQILSFLTTKPSSNFKISEEYKRRYSIDRDDYSALKTKENV
ASFLLFNIKSGKPSMQCAESCDFTSRESILKRWGPNIADGERLSNFLEDP
RRRFGDIYERLVRPNYATNLFQTMRNSTITNRTYEFGRTYVGFGFVDLFQ
LAWGKYKDTLQERLAFYGYDSNQFTTLRSKMIYGIMKYFKEDEISTSSLL
QIWFSSCWSRETEKAFRLVSQDALKNPDKYQLQSGDADIIQKWLRYKISL
DDAKSKFSREIKSVDRDAPFEAIWSMKLEEDRVKFLRYLYTGIIFVDESK
ISTGNPTMFYESPNNKRVTEESFFQSINLLASQFEVGRSNHKTMHELIIS
CTLDVMTGFRALIKSGNIQCYLETKFIDPIDLSFAQQIKLLSPLGINWSN
IPDYMKPKEFIKFAKACSVDDTIHYLHFMNWAEFVLGACHVDWMFKQEEC
IRKCKNLKK Run BLAST on NCBI transcript from alignment at sc0000386:114717..116686+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021447 ID=TCONS_00021447|Name=TCONS_00021447|organism=Clytia hemisphaerica|type=transcript|length=1970bp|location=Sequence derived from alignment at sc0000386:114717..116686+ (Clytia hemisphaerica)
aatttctttaaaataagaTTCTAATCCTTGATATAAGAATAGAGATTATA
ATGGGAAAGTGCAATGTCTGTGACCAGCCAGATTCAAATAGATGCAGTCA
ATGTCAAACAGTATATTACTGTTCTAAAGAATGTCAGGTTTCTGATTGGA
AAAACCACAAGAAACGATGCAAAGAAATCAGCAAAGAGAAAAAGGCTACC
CAAGAAGCGACGAACAGCTCTTTTGAGTGAGTAGTGAATTTCATTTTATC
TGGTAAGCAAAGGGCTTTGATGGCCtagaaatattaagaacaatttaaga
acattttaagactttgtggactctataaaacactcaatttcttaaCCCTT
CGAcgttaaagagatcgtaaatggtgtttaaaattttcactttttgataa
atttgtagcctagcatgctagacgactaattcaatTCAGAAATAGTAAAA
AAgacgcaaaaaataatggaacAGACAAATGGTAGTTTTAATATCCCGTA
ACAAATTATAAGTTTTTTCCATCTAAAAAACAGACCCAGCCGTAATATCA
TTTATTTTCTCCTATCCGAACCCTAAAccaaataataatttattttgatt
tattttctctCATTTATAGACAGcagattttatcatttttgacCACGAAA
CCTTCCagcaatttcaaaatatcagaggAATATAAAAGACGCTATTCTAT
TGATCGAGATGATTATTCTGCACTCAAGACAAAGGAAAACGTTGCatctt
ttttgttatttaataTCAAAAGCGGAAAACCCAGCATGCAATGCGCAGAA
AGTTGTGATTTCACTAGTCGTGAAAGTATCCTGAAAAGATGGGGACCAAA
CATAGCAGATGGAGAGCGTTTAAGTAATTTTCTTGAAGACCCTCGAAGGA
GATTCGGAGATATTTACGAGCGCCTTGTTCGCCCCAACTATGCGACCAAT
TTATTTCAAACAATGCGAAATTCAACCATAACCAATCGAACTTATGAATT
CGGTCGGACGTATGTTGGGTTCGGATTCGTTGATCTGTTCCAATTAGCCT
GGGGTAAATACAAAGATACTTTACAGGAGAGATTGGCTTTCTATGGTTAT
GATTCAAACCAATTTACGACTTTGAGAAGCAAAATGATCTATGGTATTAT
GAAGTACTTCAAGGAAGATGAAATCAGTACTTCAAGTTTACTACAAATCT
GGTTTTCATCATGCTGGAGCAGGGAAACTGAGAAGGCGTTCCGTTTAGTA
TCGCAGGATGCTTTGAAGAATCCAGACAAATATCAACTCCAGTCTGGTGA
TGCTGACATAATCCAAAAATGGCTCAGATATAAAATCTCTTTGGATGATG
CGAAATCAAAATTCTCTAGAGAAATCAAATCAGTCGACAGAGACGCGCCT
TTTGAAGCTATTTGGAGTATGAAACTTGAGGAAGACCGAGTAAAATTTTT
GAGGTACCTTTACACGGGCATTATCTTTGTGGATGAGTCTAAAATTTCAA
CTGGCAATCCAACAATGTTTTATGAAAGCCCAAATAATAAAAGGGTGACC
GAGGAAAGTTTTTTCCAGAGCATCAATCTTTTGGCATCACAGTTTGAAGT
TGGGCGATCAAATCATAAGACAATGCATGAATTGATTATTTCTTGCACTC
TGGATGTCATGACAGGATTCAGAGCATTGATCAAGAGTGGCAACATTCAA
TGCTATTTGGAAACTAAATTTATCGACCCTATAGATCTATCTTTCGCACA
GCAAATCAAATTGCTTTCACCTCTCGGAATCAACTGGTCAAATATTCCAG
ATTACATGAAGCCAAAGGAGTTTATCAAATTCGCCAAGGCTTGCTCAGTA
GATGATACCATCCATTATCTACATTTTATGAATTGGGCTGAATTTGTGCT
TGGTGCGTGTCACGTTGACTGGATGTTCAAGCAAGAAGAATGTATTAGAA
Aatgcaaaaatctaaaaaag Coding sequence (CDS) from alignment at sc0000386:114717..116686+ >TCONS_00021447 ID=TCONS_00021447|Name=TCONS_00021447|organism=Clytia hemisphaerica|type=CDS|length=3054bp|location=Sequence derived from alignment at sc0000386:114717..116686+ (Clytia hemisphaerica)
ATGGGAAAGTGCAATGTCTGTGACCAGCCAGATTCAAATAGATGCAGTCA
ATGTCAAACAGTATATTACTGTTCTAAAGAATGTCAGGTTTCTGATTGGA
AAAACCACAAGAAACGATGCAAAGAAATCAGCAAAGAGAAAAAGGCTACC
CAAGAAGCGACGAACAGCTCTTTTGAACAGcagattttatcatttttgac
CACGAAACCTTCCagcaatttcaaaatatcagaggAATATAAAAGACGCT
ATTCTATTGATCGAGATGATTATTCTGCACTCAAGACAAAGGAAAACGTT
GCatcttttttgttatttaataTCAAAAGCGGAAAACCCAGCATGCAATG
CGCAGAAAGTTGTGATTTCACTAGTCGTGAAAGTATCCTGAAAAGATGGG
GACCAAACATAGCAGATGGAGAGCGTTTAAGTAATTTTCTTGAAGACCCT
CGAAGGAGATTCGGAGATATTTACGAGCGCCTTGTTCGCCCCAACTATGC
GACCAATTTATTTCAAACAATGCGAAATTCAACCATAACCAATCGAACTT
ATGAATTCGGTCGGACGTATGTTGGGTTCGGATTCGTTGATCTGTTCCAA
TTAGCCTGGGGTAAATACAAAGATACTTTACAGGAGAGATTGGCTTTCTA
TGGTTATGATTCAAACCAATTTACGACTTTGAGAAGCAAAATGATCTATG
GTATTATGAAGTACTTCAAGGAAGATGAAATCAGTACTTCAAGTTTACTA
CAAATCTGGTTTTCATCATGCTGGAGCAGGGAAACTGAGAAGGCGTTCCG
TTTAGTATCGCAGGATGCTTTGAAGAATCCAGACAAATATCAACTCCAGT
CTGGTGATGCTGACATAATCCAAAAATGGCTCAGATATAAAATCTCTTTG
GATGATGCGAAATCAAAATTCTCTAGAGAAATCAAATCAGTCGACAGAGA
CGCGCCTTTTGAAGCTATTTGGAGTATGAAACTTGAGGAAGACCGAGTAA
AATTTTTGAGGTACCTTTACACGGGCATTATCTTTGTGGATGAGTCTAAA
ATTTCAACTGGCAATCCAACAATGTTTTATGAAAGCCCAAATAATAAAAG
GGTGACCGAGGAAAGTTTTTTCCAGAGCATCAATCTTTTGGCATCACAGT
TTGAAGTTGGGCGATCAAATCATAAGACAATGCATGAATTGATTATTTCT
TGCACTCTGGATGTCATGACAGGATTCAGAGCATTGATCAAGAGTGGCAA
CATTCAATGCTATTTGGAAACTAAATTTATCGACCCTATAGATCTATCTT
TCGCACAGCAAATCAAATTGCTTTCACCTCTCGGAATCAACTGGTCAAAT
ATTCCAGATTACATGAAGCCAAAGGAGTTTATCAAATTCGCCAAGGCTTG
CTCAGTAGATGATACCATCCATTATCTACATTTTATGAATTGGGCTGAAT
TTGTGCTTGGTGCGTGTCACGTTGACTGGATGTTCAAGCAAGAAGAATGT
ATTAGAAAatgcaaaaatctaaaaaagATGGGAAAGTGCAATGTCTGTGA
CCAGCCAGATTCAAATAGATGCAGTCAATGTCAAACAGTATATTACTGTT
CTAAAGAATGTCAGGTTTCTGATTGGAAAAACCACAAGAAACGATGCAAA
GAAATCAGCAAAGAGAAAAAGGCTACCCAAGAAGCGACGAACAGCTCTTT
TGAACAGcagattttatcatttttgacCACGAAACCTTCCagcaatttca
aaatatcagaggAATATAAAAGACGCTATTCTATTGATCGAGATGATTAT
TCTGCACTCAAGACAAAGGAAAACGTTGCatcttttttgttatttaataT
CAAAAGCGGAAAACCCAGCATGCAATGCGCAGAAAGTTGTGATTTCACTA
GTCGTGAAAGTATCCTGAAAAGATGGGGACCAAACATAGCAGATGGAGAG
CGTTTAAGTAATTTTCTTGAAGACCCTCGAAGGAGATTCGGAGATATTTA
CGAGCGCCTTGTTCGCCCCAACTATGCGACCAATTTATTTCAAACAATGC
GAAATTCAACCATAACCAATCGAACTTATGAATTCGGTCGGACGTATGTT
GGGTTCGGATTCGTTGATCTGTTCCAATTAGCCTGGGGTAAATACAAAGA
TACTTTACAGGAGAGATTGGCTTTCTATGGTTATGATTCAAACCAATTTA
CGACTTTGAGAAGCAAAATGATCTATGGTATTATGAAGTACTTCAAGGAA
GATGAAATCAGTACTTCAAGTTTACTACAAATCTGGTTTTCATCATGCTG
GAGCAGGGAAACTGAGAAGGCGTTCCGTTTAGTATCGCAGGATGCTTTGA
AGAATCCAGACAAATATCAACTCCAGTCTGGTGATGCTGACATAATCCAA
AAATGGCTCAGATATAAAATCTCTTTGGATGATGCGAAATCAAAATTCTC
TAGAGAAATCAAATCAGTCGACAGAGACGCGCCTTTTGAAGCTATTTGGA
GTATGAAACTTGAGGAAGACCGAGTAAAATTTTTGAGGTACCTTTACACG
GGCATTATCTTTGTGGATGAGTCTAAAATTTCAACTGGCAATCCAACAAT
GTTTTATGAAAGCCCAAATAATAAAAGGGTGACCGAGGAAAGTTTTTTCC
AGAGCATCAATCTTTTGGCATCACAGTTTGAAGTTGGGCGATCAAATCAT
AAGACAATGCATGAATTGATTATTTCTTGCACTCTGGATGTCATGACAGG
ATTCAGAGCATTGATCAAGAGTGGCAACATTCAATGCTATTTGGAAACTA
AATTTATCGACCCTATAGATCTATCTTTCGCACAGCAAATCAAATTGCTT
TCACCTCTCGGAATCAACTGGTCAAATATTCCAGATTACATGAAGCCAAA
GGAGTTTATCAAATTCGCCAAGGCTTGCTCAGTAGATGATACCATCCATT
ATCTACATTTTATGAATTGGGCTGAATTTGTGCTTGGTGCGTGTCACGTT
GACTGGATGTTCAAGCAAGAAGAATGTATTAGAAAatgcaaaaatctaaa
aaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021447-exon-sc0000386-1491911889:114717..114942 | TCONS_00021447-exon-sc0000386-1491911889:114717..114942 | Clytia hemisphaerica | exon |
| TCONS_00021447-exon-sc0000386-1510915933:114717..114942 | TCONS_00021447-exon-sc0000386-1510915933:114717..114942 | Clytia hemisphaerica | exon |
| TCONS_00021447-exon-sc0000386-1575043694:114717..114942 | TCONS_00021447-exon-sc0000386-1575043694:114717..114942 | Clytia hemisphaerica | exon |
| TCONS_00021447-exon-sc0000386-1491911889:115336..116686 | TCONS_00021447-exon-sc0000386-1491911889:115336..116686 | Clytia hemisphaerica | exon |
| TCONS_00021447-exon-sc0000386-1510915933:115336..116686 | TCONS_00021447-exon-sc0000386-1510915933:115336..116686 | Clytia hemisphaerica | exon |
| TCONS_00021447-exon-sc0000386-1575043694:115336..116686 | TCONS_00021447-exon-sc0000386-1575043694:115336..116686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000386 | supercontig | sc0000386:114717..116686 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002893 | Znf_MYND |
Blast
The following BLAST results are available for this feature:
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