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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021434 ID=TCONS_00021434|Name=TCONS_00021434|organism=Clytia hemisphaerica|type=transcript|length=1414bp
TGGCAAGTGGAGTGGATGATGGAAATCCTGGATGATGATCAGTGACGGTG
GAGTGATGGAGTGGTACCTTGTGGAGTTTTTTTGACAGTTTGAATTCAAA
CACATGATGGATACTACAGACAAACAAATGGCTTAACAATGGGGGAGCTG
GACATCATTATTAGCCAACAGATTGACTTCACAAATACAACGAGTGAATC
AGAGGTGAAGCTAAAATCTATGCGTGCTATGGATTATATTGTTtgtgaaa
taaataaaagtgaaattgaaGAAGAACTTAGAAAAGATATGGATCAAGAG
TATCAATAACTTGCATGATAATTTGAAATTCACTTGTGAAAGAGTGCATA
ATTGTTCTATCCCTTTTTTTAACATTcgttaacatttttaaaaatgaatt
tctaTTGTTAAAAAGATGTAAATCATGTGCGCCATAGAATACATTAGAAA
GTTACCGAGCTTTACATAAAATTGTTATAGTGTAGTTTAATTTAACATTT
GTTTAACATTCTGGAGGTCTATCtgatttatttttagaaatgttagcAAA
TGTTAACCAAAAATATATATGATTCTTATAGGGATTTCGAACTTCCTACC
TACCTACCTTAGTTCTTCTAATTTAAATTTAATCTTTAATCATGGTTCCA
ATCACTCCCATCATTCTGATTGTgtcatttttatgttttcagttgttttt
tgtcatgtttgtttatatttttcagttttgtcTGCATTTTACACAACTTT
CTGCCATTTAGggtatttttcatttgtttggaTAGATTAATTTGAtcagt
attttatttatttatttcaatacCTAGTTTGCTTTTTTCactaatttatt
tcatttttacataaattatatttattatttggtTTGTATTTTACACACCT
TGCATAAAAAGAGCTCAGCTCAGCCATTTGTTTATTCCGACAGAGACTAC
CAAGGATTCAACATCAAActtcaattttgaaacttaaTCTAATTTAGTCT
CATGGTCTCACACTAATCATTTTGGACTCCACTTTTACACTTGGTGTTAG
TCCACATACACCTTCTGCTGCCTGCATACAGCCTTCACATTCAGGCCAGC
TGGTgagtttttgttctttttgattTTGCATTTCTTTTTTAAGTTAAGTT
AGCTtttcatttcatatttttatagcATTCAATTTACTTTTTACACTCAC
ATTAGAACTATGTCATTGAACTTATAGAACTTTGTCATTCATATTTATAC
TTCCAAAATATCATTTCATTGgacttatttttatattttagtttGAACGC
ATATGCACATCAATCATGTTCAATAAATGAATACACTTGACAGTGGTTAC
AAACACGGCTACCACCCATGACTCCTTGTCATCTCTGACCCCACATACTA
GCCCCCTCCCCTCC Run BLAST on NCBI transcript from alignment at sc0000386:44373..50229+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021434 ID=TCONS_00021434|Name=TCONS_00021434|organism=Clytia hemisphaerica|type=transcript|length=5857bp|location=Sequence derived from alignment at sc0000386:44373..50229+ (Clytia hemisphaerica)
TGGCAAGTGGAGTGGATGATGGAAATCCTGGATGATGATCAGTGACGGTG
GAGTGATGGAGTGGTACCTTGTGGAGTTTTTTTGACAGTTTGAAGTAAGT
CTGAGGAACTTTTTCATGATTTCCTTGAAAGTATTTCCTCTATGACTGAC
TTACTCAGAGGATGTTTCTATCATTTAAATTTACACTACAAAAATTTGAA
CCTCCCTTCAATAAAGCACAATCATAATAGTACGGTGCAAACAAGCTGGC
AAAcaagaaatttcaaacttactaATTTGACTATCAGACAATTCTTTATA
GTTGGCTCAGAGATACCTTTTATGATCCTAGATCACCTCCAACTTTTTCA
TAATTGGCAAGTTTCAAAATTCTGTTCTGTTCTGTTCTGAATGCGGGACG
TGAGCAAAACGAGTGCAAAATTGAGCTAggcattttcaattttcaaaacg
ttttgGGGGCAGAGGGCCCCCttagaaaaacttttaacattgAATTGAtg
tgaaaattaccaaaatccTGTCTAATCTAATGTTTCccttttttatcatt
ataaaAATCGATCAATTTTTCGTGACTTTGAGCATAACTCTAATGAATAT
TTGGACAAACAGAGGATTTGGGCGTTCAGCCGGACAAAACGTTAATTTGT
GTACATATGTCACGCAGGATGCAGGACACTTGGTACCTAACTATGCTTTT
TTCACCACTTTTCACCTAAGGCggcaataaaaaatatgttgCGTTCGGGT
CGTCTGACCGactgtttatttacaagaaaacccGATTCGTTTTTTTTGGG
CGCTGTTTGCAGGTTTGCAGGATCTTtccttatctgatattccaatGGTG
TTTTGGCGGccacccacgctaaagctctgaaggagcgggccaatatcaca
tcggagacctatagtagtcatcgtttgaGGTACCGCATCACATTCGTGTC
TAGCCGTCCTTACACTTTTTTCTTGACTATCGgttgcacccgactgaatt
tagcatgaaaatctctgctgcctgagaaGTCCTGAGAAACATTCAAACCT
TCGATTGTTGGCtgtttttggtttattttggtagatttattgaaacttga
cagtttcattactttttcagTATATATTATATTTAGTACCTATTGTAATT
TCTTAGTAAGTGCACCAAGTTAAAAGTGCTTGACATTGATTATTTGTATt
attatattttgttatttatttgtttttggtgGTTGACTGGTTATATTTTT
AAAGGCCAAATCAAAGAAAGCATATCAGGTatattttatttagttttacC
AATAATTTTTATGCTGAAATTTTAAACTGCTGCATTCCAATTTAGACCTT
TTAGTTAGAGCCTGTCGACCGCCCTCCATGNTTTTACCAATAATTTTTAT
GCTGAAATTTTAAACTGCTGCATTCCAATTTAGACCTTTAGTTAGAGCCT
GTCGACCGCCCTCCATGCAGAACAGTGGACCGCCCAACCCCAACCGACAT
CAACAAACTTGTTGATCATGACCTGTGTGTTGTTTATTTGGAAAAGCCAG
AACCCTCCTTCATCAATAACAAAGTTGGAGGGAGGTTCCCATATATTGTA
TCAGTATCTTGGGGacaaagcttttattttttggtaACACAACCATCTTT
GCATGTTTTGCCACCAATCAAACTCTATTTTTAGAGGCTGACATGCATAT
TTCAGGTAGTGAAAGATCTAGTGCAGgtgtaattttcatttggtGTGTTG
AGGCAAGCTTAGTGATTCTGCAAATNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAtcgcttgtttac
ttttttaggCAGTGAAAGATCTTGAATAGGTGAAATTGTCATTCGATGTG
AGGAGACAAACTTATTTATTCTAGTAGCAGCAAAGAATTCACATTGTATT
GCTATAAATTGAACTGTAATTGGGTTTGGGTTTAGAGCCACTCTCAATAA
GTTTTAGTTTGCCTcctgctttgtttacatttttcagttCAGAGCACTAT
GTAGAAATCAcacgggaaattttttttgcatgtgtACTCTTAGTTCGGGG
CACTAGTAACTTTTTACCCTCCCCAGACtctttctaaattttacgaACGC
GGTCAGGAGGAATTCCGTAATgcaaaggttccagatgttaaaattttccc
gttcttcagagctttagcgtgtcggaagaaatttctacatcgagtaccag
ataagATCTTTCCCATAATGGTGGGCGGGCAAACGGAGCATGTCTTTGAA
TCATTactttttgtttacttaacccacattgagtctcTTTCAAGTTTNAG
CTTTAGCGTGtcagaagaaaatttctacatcgagtaccagataagATCTT
TCCCATAATGGCGGGCGGGCAAACGGAGCATGTCTTTGAATCATTacttt
ttgtttacttaacccacattgagtctcGTTCAAGTTcttcatgtaccctt
attgaaattgtCATGTCAAATTCAGCAAAgcggtagggccaatacccTGG
GGGCCAAAAATAAGGGCCGCTTTAAGGTTAACACATGCGCGCGCACATTT
AGTTCAAtggcaaattaaaaaaatatggtggcataagattctgttgatta
ccgacttgattcatcgggatttactagatcttaaaaatccaacaaaattt
actaccgaccaactgaccgactgaccgactggatttgaaaaCATAACATA
AAACATATATGAAacatatatttttgattgccgcctaattactttttaaa
gctgagatatttgactttgaagTGTTTAGAAATTAGTCTTGAATGGAATC
TCCTTTTTCCTGTTTCAAATTTGAATGATACGATGGCTGTTTGATTTCCA
AACTTGATCAAACAGCTATCAAACTTTATGAAAATTCCTGGATTAAGTTG
ATTTAGTTTAATGTTAAGCTTGTCTggcacaaaaaaattcaagtcaCATA
ATCTTACCTTTTAGCAACTTAGCCTTGCCTTGAACAACAAGTGGCATTGG
CTCAAGAAGTGGGGGGGTATTTTGGACCATAATATAAATGCCGTATACAA
GCTACATATAAAAAACTACCGTCCAATCGGCAAACACAAATCATAGGAGG
TTAAAACAAAACACCGCCTCTAAACTCTGAATCTTTTTGTCTAGTTGGTT
GCTAAATGCTTATGACACTTTTAGATATATTTATAAACAATCAAAATTGT
GTTTGCTATTTTGATGGTCTGATAATCACTTTCTTTAGTATGTTTATTCA
TTACTATTATTGTTCTTTGGGTTTGGTCTGGTTAAACTTATAAGAGAAAC
TTTCCTGAGAGAAACCGCAAAATTTATTGACctaattattttccaaagct
gaTATATTGCACTTTAAAAATTGCCAGGTCTCATCATGAGTTCACTGTTT
TTAGCCTAGTGGCAGGAATTATGTTCTGAGAGTCCTGTCATTTatttcaa
gtttgaaaaataattggGTCAAAAGATTATTAATGGTTTTTACACGGCTA
TAGATTGAGTCTATAagccaaatataaaaaaactgtCTGATTAGTTTTCC
CATCAAAAGTGATTGCGGGGTGGTATGTCCTGCAAGGTGGTAGCAGTGTT
GTAACTTTTCCGTCCAGCTGAGATACAAATACGCTATTTCTGACCAaaga
ttttttaacaaattccGTCCATAGTTACAAAACCTGGTTGCAACACTGTG
GTAGGGTAATTTCTCCAGAGTTAATTTGTATCCCTCTTATTTCCTCATTG
CACTGGACGCTGGAAAAAACCACAatctgaaaattatattttctcaTTGT
TTCAAATATATACTACCAGACCTATTAGGTCTTTATCAAAActaatgaaa
ctgattttttaaTCAGAAAATAACCATTGCGTTTTAAAATCCATGGTTAT
AAAAGATATCACCTATCTTTCGAACAGGGCTTTGAGACAAAGATTTATAG
GATGATTTGATTGCAGTATGCAAAGATGTGATTGCAGTAGATGGATTTTG
ATGAGCCATACCATTGCAATTCCTTTGTTATTTAGAAtgaattgcaatgc
aatgtgCTCATTTATGCTCATATCTGAGCAGGCAATTtgaaacaaaatgt
aaacaatacAAATGATGTCATCCAGAAAACCATCTATATATTTCAAACTG
ATTTGATCAACCTGTATCACTTAGTCAGACTTCAGATATAATAGGCCAAT
AATTTTGTTTGGTTTACATTGTTTTCAATTGATtcaacaatcaaaatttt
cttttatactCAGGAAAATACCCTTAACCACCAATATTTGAAGAAACTTT
CAAACTCTAACAGAATTACGCTCCTGCAATGTTTAAGTTCAAACACATGA
TGGATACTACAGACAAACAAATGGCTTAACAATGGGGGAGCTGGACATCA
TTATTAGCCAACAGATTGACTTCACAAATACAACGAGTGAATCAGAGGTG
AAGCTAAAATCTATGCGTGCTATGGATTATATTGTTtgtgaaataaataa
aagtgaaattgaaGAAGAACTTAGAAAAGATATGGATCAAGAGTATCAAT
AACTTGCATGATAATTTGAAATTCACTTGTGAAAGAGTGCATAATTGTTC
TATCCCTTTTTTTAACATTcgttaacatttttaaaaatgaatttctaTTG
TTAAAAAGATGTAAATCATGTGCGCCATAGAATACATTAGAAAGTTACCG
AGCTTTACATAAAATTGTTATAGTGTAGTTTAATTTAACATTTGTTTAAC
ATTCTGGAGGTCTATCtgatttatttttagaaatgttagcAAATGTTAAC
CAAAAATATATATGATTCTTATAGGGATTTCGAACTTCCTACCTACCTAC
CTTAGTTCTTCTAATTTAAATTTAATCTTTAATCATGGTTCCAATCACTC
CCATCATTCTGATTGTgtcatttttatgttttcagttgttttttgtcatg
tttgtttatatttttcagttttgtcTGCATTTTACACAACTTTCTGCCAT
TTAGggtatttttcatttgtttggaTAGATTAATTTGAtcagtattttat
ttatttatttcaatacCTAGTTTGCTTTTTTCactaatttatttcatttt
tacataaattatatttattatttggtTTGTATTTTACACACCTTGCATAA
AAAGAGCTCAGCTCAGCCATTTGTTTATTCCGACAGAGACTACCAAGGAT
TCAACATCAAActtcaattttgaaacttaaTCTAATTTAGTCTCATGGTC
TCACACTAATCATTTTGGACTCCACTTTTACACTTGGTGTTAGTCCACAT
ACACCTTCTGCTGCCTGCATACAGCCTTCACATTCAGGCCAGCTGGTgag
tttttgttctttttgattTTGCATTTCTTTTTTAAGTTAAGTTAGCTttt
catttcatatttttatagcATTCAATTTACTTTTTACACTCACATTAGAA
CTATGTCATTGAACTTATAGAACTTTGTCATTCATATTTATACTTCCAAA
ATATCATTTCATTGgacttatttttatattttagtttGAACGCATATGCA
CATCAATCATGTTCAATAAATGAATACACTTGACAGTGGTTACAAACACG
GCTACCACCCATGACTCCTTGTCATCTCTGACCCCACATACTAGCCCCCT
CCCCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021434-exon-sc0000386-1491911889:44373..44466 | TCONS_00021434-exon-sc0000386-1491911889:44373..44466 | Clytia hemisphaerica | exon |
| TCONS_00021434-exon-sc0000386-1510915933:44373..44466 | TCONS_00021434-exon-sc0000386-1510915933:44373..44466 | Clytia hemisphaerica | exon |
| TCONS_00021434-exon-sc0000386-1575043694:44373..44466 | TCONS_00021434-exon-sc0000386-1575043694:44373..44466 | Clytia hemisphaerica | exon |
| TCONS_00021434-exon-sc0000386-1491911889:48910..50229 | TCONS_00021434-exon-sc0000386-1491911889:48910..50229 | Clytia hemisphaerica | exon |
| TCONS_00021434-exon-sc0000386-1510915933:48910..50229 | TCONS_00021434-exon-sc0000386-1510915933:48910..50229 | Clytia hemisphaerica | exon |
| TCONS_00021434-exon-sc0000386-1575043694:48910..50229 | TCONS_00021434-exon-sc0000386-1575043694:48910..50229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000386 | supercontig | sc0000386:44373..50229 + |
Blast
The following BLAST results are available for this feature:
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