TCONS_00021430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021430
Unique NameTCONS_00021430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021430 ID=TCONS_00021430|Name=TCONS_00021430|organism=Clytia hemisphaerica|type=transcript|length=267bp
CAGAGGAATTATTCAAAGATGCTTCAATGAATTTACGAGAATGGTTGACA
AGCTCAAAGGAGGTCAACAGCCTGATCGAACAGGAAGATCGCATTGAAAC
CATGACTGCTAAAGTGCTTGGACTCAACTGGAACATGGAAGATAACGAGC
TATCAATCTCAACAAAGAAATGCTAATTAGCCGAACAAGCCACAACTAAA
CGAGAAGTCCTGGCAGCTATCGCATCAATATACGACCCCCTCGGAATGAT
GAGCCCAACAATCATCA
Run BLAST on NCBI

transcript from alignment at sc0000385:549469..549735

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021430 ID=TCONS_00021430|Name=TCONS_00021430|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at sc0000385:549469..549735 (Clytia hemisphaerica)
TGATGATTGTTGGGCTCATCATTCCGAGGGGGTCGTATATTGATGCGATA
GCTGCCAGGACTTCTCGTTTAGTTGTGGCTTGTTCGGCTAATTAGCATTT
CTTTGTTGAGATTGATAGCTCGTTATCTTCCATGTTCCAGTTGAGTCCAA
GCACTTTAGCAGTCATGGTTTCAATGCGATCTTCCTGTTCGATCAGGCTG
TTGACCTCCTTTGAGCTTGTCAACCATTCTCGTAAATTCATTGAAGCATC
TTTGAATAATTCCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012015XLOC_012015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021430-exon-sc0000385-1491911889:549469..549735TCONS_00021430-exon-sc0000385-1491911889:549469..549735Clytia hemisphaericaexon
TCONS_00021430-exon-sc0000385-1510915933:549469..549735TCONS_00021430-exon-sc0000385-1510915933:549469..549735Clytia hemisphaericaexon
TCONS_00021430-exon-sc0000385-1575043694:549469..549735TCONS_00021430-exon-sc0000385-1575043694:549469..549735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:549469..549735 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.669933	1.31085	0	2.5221	2.2821	8.54591	2.493	9.26394	4.79563	5.5168	3.54158	3.26931	0.335977	0	0	0	7.54766	0.658173	0	0	0	0	0.635263	1.13391	0.811314	1.73171	0.656721	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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