TCONS_00021424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021424
Unique NameTCONS_00021424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021424 ID=TCONS_00021424|Name=TCONS_00021424|organism=Clytia hemisphaerica|type=transcript|length=522bp
AATCGACGAGGCGAAAGATTGGCTTATTCGATCAAACTGCCGGCACCGAA
CCATCGTCTAcatatcaaagatggcggattattttgattcaaataggGAT
TGAGTAGCTCTATGtggtgttttatataagatatctatgaTGCAAACCAG
ATTGAGAGGGGGGGCAAAAATCATGTCGACGGAggaaattttaaattgtt
cGCTCTTTTTTTACCCCCCTCAAACAGCCTAAAACGGCATATTTAGAATT
TACATACGATGAGTCACGATGAGCTCTTCTATTTCAAAACTTAGCactat
aaaaaatatttgttaattagaaaaaattacttGGCAAATTTTGGGTGGGT
TATGGACACAAATCTGAAAAGCCCCCGAAGGGGGCTAGAtaagcgacttt
tatcgaaaagtgaagcaaggtttggaaggatttcctaccaaagtcacgtg
tctaaaatatgcaatttcaccggattgagagatgcgaaattgcgtttgcc
gcctactttttttatcTCACGc
Run BLAST on NCBI

transcript from alignment at sc0000385:460808..461329

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021424 ID=TCONS_00021424|Name=TCONS_00021424|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0000385:460808..461329 (Clytia hemisphaerica)
gCGTGAgataaaaaaagtaggcggcaaacgcaatttcgcatctctcaatc
cggtgaaattgcatattttagacacgtgactttggtaggaaatccttcca
aaccttgcttcacttttcgataaaagtcgcttaTCTAGCCCCCTTCGGGG
GCTTTTCAGATTTGTGTCCATAACCCACCCAAAATTTGCCaagtaatttt
ttctaattaacaaatattttttatagtGCTAAGTTTTGAAATAGAAGAGC
TCATCGTGACTCATCGTATGTAAATTCTAAATATGCCGTTTTAGGCTGTT
TGAGGGGGGTAAAAAAAGAGCgaacaatttaaaatttccTCCGTCGACAT
GATTTTTGCCCCCCCTCTCAATCTGGTTTGCAtcatagatatcttatata
aaacaccaCATAGAGCTACTCAATCcctatttgaatcaaaataatccgcc
atctttgatatgTAGACGATGGTTCGGTGCCGGCAGTTTGATCGAATAAG
CCAATCTTTCGCCTCGTCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012009XLOC_012009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021424-exon-sc0000385-1491911889:460808..461329TCONS_00021424-exon-sc0000385-1491911889:460808..461329Clytia hemisphaericaexon
TCONS_00021424-exon-sc0000385-1510915933:460808..461329TCONS_00021424-exon-sc0000385-1510915933:460808..461329Clytia hemisphaericaexon
TCONS_00021424-exon-sc0000385-1575043694:460808..461329TCONS_00021424-exon-sc0000385-1575043694:460808..461329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:460808..461329 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.42053	0.552658	0.385013	0.627792	0	0	0.291452	0.545708	0.286547	0	0	0.301955	0.301535	0.633084	0.193087	0	0	0.612057	0.121122	0	0.428388	0.320727	0	0.118154	0.973569	1.19472	0	0	0.251614	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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