TCONS_00021397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021397
Unique NameTCONS_00021397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021397 ID=TCONS_00021397|Name=TCONS_00021397|organism=Clytia hemisphaerica|type=transcript|length=356bp
NGGATGAGATTGAATAAACAATAACGCCGTGTTTGTAACACTGTTCAGTG
CATTAATTTATTGATGTGTAGTAATGtagtgttcaaactgaaaataaaaa
ttgaaaaatactaagtctaatgaatgaaaataaaataatctaaCTTAGGT
ACAAAAGGATGTAAGTCTATGAGAACAAAGGTAGAAGTagaaaacagcaa
atgtataaATGAATGATTGAGGTACTAATATAatgtaaaagaaaatctaa
CTTAACTTAACTTAACTTAGGTGCCACAAATAGAGAcagagaaaagaaac
aaaaaactcaCCAGCTGGCCTGAGGTAGAATGCTGTAAGCAGGCAGCAGA
ACACNN
Run BLAST on NCBI

transcript from alignment at sc0000385:69398..69753

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021397 ID=TCONS_00021397|Name=TCONS_00021397|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at sc0000385:69398..69753 (Clytia hemisphaerica)
NNGTGTTCTGCTGCCTGCTTACAGCATTCTACCTCAGGCCAGCTGGtgag
ttttttgtttcttttctctgTCTCTATTTGTGGCACCTAAGTTAAGTTAA
GTTAAGttagattttcttttacatTATATTAGTACCTCAATCATTCATtt
atacatttgctgttttctACTTCTACCTTTGTTCTCATAGACTTACATCC
TTTTGTACCTAAGttagattattttattttcattcattagacttagtatt
tttcaatttttattttcagtttgaacactaCATTACTACACATCAATAAA
TTAATGCACTGAACAGTGTTACAAACACGGCGTTATTGTTTATTCAATCT
CATCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011982XLOC_011982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021397-exon-sc0000385-1491911889:69398..69753TCONS_00021397-exon-sc0000385-1491911889:69398..69753Clytia hemisphaericaexon
TCONS_00021397-exon-sc0000385-1510915933:69398..69753TCONS_00021397-exon-sc0000385-1510915933:69398..69753Clytia hemisphaericaexon
TCONS_00021397-exon-sc0000385-1575043694:69398..69753TCONS_00021397-exon-sc0000385-1575043694:69398..69753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:69398..69753 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.84621	2.42061	1.80898	1.23383	0	0	2.84399	0.954791	0.766342	1.70233	1.12447	1.24068	0.888035	0.502152	1.8406	2.08905	2.20465	0	0	0.660161	0.896386	0	0.851548	2.24091	1.33718	0.808407	0.733317	0.938598	0.619551	1.67917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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