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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021392 ID=TCONS_00021392|Name=TCONS_00021392|organism=Clytia hemisphaerica|type=transcript|length=3175bpRun BLAST on NCBI protein sequence of TCONS_00021392-protein >TCONS_00021392-protein ID=TCONS_00021392-protein|Name=TCONS_00021392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1032bp MEIVTKIVLILLVLYMSCKHNVEARTDGKLQIGGANVCKRVFTYNSYVYLRun BLAST on NCBI transcript from alignment at sc0000385:507695..527619- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021392 ID=TCONS_00021392|Name=TCONS_00021392|organism=Clytia hemisphaerica|type=transcript|length=19925bp|location=Sequence derived from alignment at sc0000385:507695..527619- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000385:507695..527619- >TCONS_00021392 ID=TCONS_00021392|Name=TCONS_00021392|organism=Clytia hemisphaerica|type=CDS|length=43344bp|location=Sequence derived from alignment at sc0000385:507695..527619- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021392 vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4) HSP 1 Score: 178.333 bits (451), Expect = 1.381e-45 Identity = 114/330 (34.55%), Postives = 155/330 (46.97%), Query Frame = 2
Query: 488 SGFTGTYCEKEINECLSSPCEQICTNIRGDYACSCKKGFRKVISNHTSEMHSPRCENIDECKINEDLMIKDGDTNRTQALCKCAFNQKGCKASCHNTVGSYKCSCSSGYRLVAN-RVCTDEDECRLGTHQCQHICLNQRNGYACTCYPGYRLDSDGKTCNDINECSVSNGGCEQICANTLGSFECSCKKGFLLLGDNYRCQDINECQIGRP-CDRFNGYCINLPGRYQCGCNPGYELDLLDRKTCKDVDECKRRND-CQHFCYNIDGGYACGCRHGYLLQSDGRTCQDLNECADKYNGCEQICENTPGSFKCKCRQGFTLNYDGQTCRGL 1468
S F C + L C C NI G Y C CK+G+ ++ D T R Q LC A C+ C N GS+ C C SGY L + + C D C H C+H C+N Y C C+ G+ L+ D KTC I+ C+ SN GC+ C NT S+ C C KGF L D C+ IN C + +P C+ C+N+ Y C C+ GY LD + KTC VD C +++ C+ C N + + C C G+L+ D +TC ++ C +GCE C N SF C+C +G L DG+TC L
Sbjct: 230 SVFQKKLCTAHMCSTLEHNCAHFCINIPGSYVCRCKQGY---------------------------ILNSDQTTCRIQDLC--AMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEH---ECVNMEESYYCRCHRGYTLD-PNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKL 526 HSP 2 Score: 167.933 bits (424), Expect = 2.843e-42 Identity = 119/358 (33.24%), Postives = 167/358 (46.65%), Query Frame = 2
Query: 473 VCKCKSGFT----GTYCEKEINECLSS--PCEQICTNIRGDYACSCKKGFRKVISNHTSEMHSPRCENIDECK----------INEDLM-----IKDGDTNRTQALCK----CAFNQKGCKASCHNTVGSYKCSCSSGYRLVAN-RVCTDEDECRLGTHQCQHICLNQRNGYACTCYPGYRLDSDGKTCNDINECSVSNGGCEQICANTLGSFECSCKKGFLLLGDNYRCQDINECQIG-RPCDRFNGYCINLPGRYQCGCNPGYELDLLDRKTCKDVDECKRRND-CQHFCYNIDGGYACGCRHGYLLQSDGRTCQDLNECADKYNGCEQICENTPGSFKCKCRQGFTLNYDGQTCR 1462
VC+C SG+ G C ++ C S CE C N G Y C C +GF T C ID C +N D +K N + C+ CA N+ GC+ C N SY C C GY L N + C+ D C H C+ +CLN + + C C G+ ++ D KTC+ ++ C +S+ GCE C N SF C C +G +L D C ++ C +G C+ C++ + C C GY L D KTC+ D C+ + C+H C N D Y C C G+ L DG+ C+ + C ++GCE IC N S+ CKC +GF L DG+ C+
Sbjct: 302 VCQCYSGYALAEDGKRC-VAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKT-------CTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEH---SCVSSEDSFVCQCFEGYILRE-DGKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGRRCK 647 HSP 3 Score: 137.887 bits (346), Expect = 5.759e-33 Identity = 105/328 (32.01%), Postives = 155/328 (47.26%), Query Frame = 2
Query: 431 CNPRCINGDCVKPNVCKCKSGFTGTYCEK---EINECLSS--PCEQICTNIRGDYACSCKKGFRKVISNHTSE------MHSPRCE----NIDE---CKINEDLMIKDGDTNRTQALCKCAFNQKGCKASCHNTVGSYKCSCSSGYRLVAN-RVCTDEDECRLGTHQCQHICLNQRNGYACTCYPGYRLDSDGKTCNDINECSVSNGGCEQICANTLGSFECSCKKGFLLLGDNYRCQDINECQ-IGRPCDRFNGYCINLPGRYQCGCNPGYELDLLDRKTCKDVDECKR-RNDCQHFCYNIDGGYACGCRHGYLLQSDGRTCQDLNE 1351
C C+N D +C+C GF +K +I+ C SS C+ C N Y+C C KGF T ++ P CE N++E C+ + + D + + CA GC+ C NT S+ C CS G+ + + + C+ D C L H C++ C+N +AC C G+ L SDGKTC ++ C++ + GCE C ++ SF C C +G++L D C+ + CQ I C+ C+N Y C C G+ L D K C+ D CK + C+H C N Y C C G++L DGR C+ E
Sbjct: 331 CEHECVNAD--GSYLCQCHEGFALNPDKKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNMEESYYCRCHRGYTL-DPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQAIDHGCEHI---CVNSDDSYTCECLEGFRL-AEDGKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGRRCKKCTE 651 HSP 4 Score: 109.383 bits (272), Expect = 4.400e-24 Identity = 78/249 (31.33%), Postives = 116/249 (46.59%), Query Frame = 2
Query: 431 CNPRCINGDCVKPNVCKCKSGFT----GTYCEKEINECLSSP--CEQICTNIRGDYACSCKKGFRK-------------VISNHTSEMHSPRCENIDE---CKINEDLMIKDGDTNRTQALCKCAFNQKGCKASCHNTVGSYKCSCSSGYRLVAN-RVCTDEDECRLGTHQCQHICLNQRNGYACTCYPGYRLDSDGKTCNDINECSVSNGGCEQICANTLGSFECSCKKGFLLLGDNYRCQDINECQI 1108
C C+N + + C+C G+T G C + ++ C CEQ+C N + C C +GF ++S+H E C N+D C+ E +++ D L CA GC+ SC ++ S+ C C GY L + + C +D C+ H C+HIC+N + Y C C G+RL DGK C + C ++ GCE IC N S+ C C +GF+L D RC+ E I
Sbjct: 413 CEHECVNME--ESYYCRCHRGYTLDPNGKTCSR-VDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDLKTCSRVDYCLLSDHGCEY---SCVNMDRSFACQCPEGHVLR-SDGKTCAKLDSCALGDHGCEHSCVSSEDSFVCQCFEGYILREDGKTCRRKDVCQAIDHGCEHICVNSDDSYTCECLEGFRLAEDGKRCRRKDVCKSTHHGCEHICVNNGNSYICKCSEGFVLAEDGRRCKKCTEGPI 654 The following BLAST results are available for this feature:
BLAST of TCONS_00021392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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