TCONS_00021388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021388
Unique NameTCONS_00021388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021388 ID=TCONS_00021388|Name=TCONS_00021388|organism=Clytia hemisphaerica|type=transcript|length=3945bp
ttcaGAACTAACCAGTAAAAAAAGAATAATAGAAAATAAGAATTATGGAT
TCATATTTGGACATACCACGTGTGGCTTGGGAAGCTGATCACGAATGGCA
TGCACGAAGATCCTTTCTAGAATCCAATCAAGAGTTCTTCAGTGGTGATA
AACTAGCATCTTTGTCAATGGCATGGAGTAATTGGATATTCATGGGATGT
AACTATGGCGAACAAGTACAAGCAACATTAGAAGATTGTCATGCTAGACT
GCCACCAGAAGTGGATGAGAACATCAAAAAGCTTTTAGATGCTGCCACAC
CCAAAGTGAAATTTGTCAAAGCGTCTGGTAGTGGTGAAGATCTAGGCACA
CGAACGGGTCCCCCGCAAGGTGGTAAAAGAAAACTAAACACACCCCAAGA
acattattcaaaatatttcaaaaaagacaCAACAGAATCAGaaaacacaa
caacaacaacaacaacaaatataGACGTGAACCATCCAAACCATATCCGA
GGATTAAAGATTTATTTACCATCAAAAGAAATGGAGAATCAAATAGCTGG
GGAATCTGGAAATTACATATTGAGTACGATCGGTGCTGTAAACGAAAGTT
GTCAAAAATGcaagaaaataaatgaatacGTCGAAGAAATGACGTTAGAT
AAGTATAAGTGTACGTTATACGTAGACGGGCGTATGATAGCGCAATCTTA
CGGGGAAAACAAGAAAGATACTAAAAGACTCTGTGCTGAAAAGGGACTTG
ATTATTTGAAGAAATACCAGGAGATTGTTTACAAAGATCGAATCAACCAT
GATAAAGTAACTGAAATTGACAAGGGGAATTTAGTTAAGGAATCTTATGA
AAATGCACCCAAGATTGCTGATGATAACTTAGGTAGTAAATTGTTAAAGA
AAATGGGCTGGGACGGGAGTAGCGGTGTTGGTAAGTACTCGCACGGCATT
AGTGAACCCGTTTTTGTTGAATCCGTTGAAAATCGGGTTGGTTTCGGACA
CAGCTATGACGATCGGACTGTCCGAAAAAGTTCAGTGGAAAGCACTTTGT
TGGATTTCTTAAGAGACTCCAAACAAGAGGagattaagttttcaaagaac
ttAACGAAAGAAGATCGTGCCTTGGTTCATCGGCTTTGTACTAAATATCA
TCTGAAGCATAAATCGTTTGGTAAAAATGAGGATCGTTATTTATTAGTCA
GTAAACAGTAGtttttcttcttgtaataatacATTATACacgttttgtta
taagaacaaaagaacaTTAGACTTCGATGTCCAAaatattatgaacagtt
taagACTAAAACATGTTGAacgttcttataagaaaacatgtatccacttt
ttggacctaccccgccggtgggtggaggtcctttaaattaaccgatgtta
gtccgttcgtccgtccgttcgtctgtttgTCTGTTGCCaatctcgggatt
ggctcattagttttttctgattttttgcacagtgatgcaaaatggtgatt
cccagaaagtgacggagctcgattttcgaaaagaaaacattctggGCAAA
TTTGAGCCTAAAAGTGCTtaaaatgggtttttttggactttgtgcgaAAT
CACTTCAttatagttttttctgattttattcATAAAGATGGAAGGTTCTC
TAAAATACGGCTGAAtcagtttttttcggaaattttttttcggccgTATA
AATCGGGTTTTCTTGTTTAGGCAAATTCCCTTTTGCcatatttagggaaa
attagcatttctcgagattggcttggtattttttcttattttttacctAG
CGAtttaaaatggtaatatttaatttctgattgaggccgattttggaaaa
aatgattttttggaTAAATTTGGATCTTCACTAGGGAAATCacgctaaaa
tatttattcacccCAGTATCTACGACTATAAGTCATACGACTTTAACTAT
ACTTCACAGTTCGATTTTAATTTGAGCTGTGATACCATGAAggtaatcta
ttcaagctgctcgctacacttttttactctcttgctatctgtcctatttt
tatctgattctcatcatcaggtaggtccattgaGCATTTTGCTTGTTCTA
CTTATcactatctaactttcatcatcaggtaggttcagcatctagcttgt
tatccctagttttattttattttctattttcaccTCTGCTATATATAAAG
TGTATGTGTGATTTTGTTCGAAAGTGAGAAAATCGATTAAATATTTGTAG
TTGTTAATTGTATTTACTgtgaaactaaaaatttttatgctttttccatt
tttatgtattttgccACCCCTAATAAAAGCTTTAAAGCttggtatttaaa
aaaagtggcGTTTAACTCTATTCGCGTGCGTTTAACACTAGACGCACGCG
TTTAACATTAAACGCCCGTACCTAGTGAAAAAAGTTAAACGCAcatatct
aaaaattttgatacGTGCGACGTTTCactttttccctctttttcgaTATC
TCTTTGCTAAAAAGCTCCCAGTGAGTACATAGATGATCTAAAAACTTAAA
CGCCCGTGACTAACATTAGACGTGCGCGACAACTGTTAAACGTCACTTTT
TTAATACGTGAGTACCGCGGTGCATGTCTGGGATCGAAGTCTTTACAAGT
TTACACTACTACCGGCTTAGTGAAGCTCAAATtacagatgtagaacgata
aacttgGTATACATTTAAAATGTGTAGTCGATGCTGCTTGAATGTTTTCC
TTTTACTTATTTCAAACTTTATACgcgtactcttaggtgccaaataaacg
ggaccccccgtttataaatttttgaaaaaattcccagctcccaaaagaaa
agtttcttgttttactctaaaaagcctaaatttggtctattttgacactt
tttagggtttttaaaaagtccattttccaaccccccggtaattaggtccc
cctcgtttatttgatttgaaaaatttttccaacccctcCCCCCCCCCGTT
TATTTGGCACCTAAGAGTAGTAACCTTCAATACATTTTCTTTCTAGAGAA
AAATAAAAAATACAAGAACTACAAATTCCAGGATATAAAAATTTGATTAA
GAAAATGAGTCGAGCTCACATGCTTTATGATGACACAAAAATGTCAGCAT
TGCCTGTTAAAATCACCAGATTGCAAACAGCTTGGGAACCGAACACAATC
TTTAAAATGAGTGGTACAGGATACATTATTGAAGCCAATATTTTAGGAAA
ATCTAAACACCAAATCGTGGAAAGCAGTAAAAAGtttcattACATTTGCT
TGCACATCTCCAtactaaaatcttttaaacgaaaatttgaCTCGAATGGC
GAAGAAATTGAGCCAGACCTTGGTGACAAAAAGAAGGTTAATACTGGATA
TTTAATGTCCTCTTATAAGGATGTTTCAAAAGAAGGTGAGGATGTTATAA
AACCAGCGGAGATGAAGAAACTGTTATATACTTCAAAAGACTTGGAAAAC
ATTCTTGATGGCAAGTTACAGGCCTATAATCACGCGAACTACGTTTCAGC
CATCTGGTGcgaagaaaaaagtttagaagGGGTCGAATTACCAAATGGCT
CGAAAGTCAGATTAAGAACGAAAGGAAACGGCTGTTATTTAGAATCAATC
ATATGCTTGGATGAAGAATTAACGACTAAACAGAATTTCACAACACACGA
TTCAGTGGGTGGCTCATGGACTGACAAAGTGTTGAATACCAAAGATACCA
AGGGTGCGCAATCACATTTAAGTCAAGAGAGTGAGGCCGTTGATGATGAC
GAATGGgaTGATTAACGGATGTCGCAATCATGTCCGATTCGGTAAGATAA
TAATTTGATAGAAATACTCTAGTTGGCGCACAACGCTGTCTAGCGTCATT
TGAacattgttttaacgttcagAAAACATCATTTGAacattgttt
Run BLAST on NCBI

protein sequence of TCONS_00021388-protein

>TCONS_00021388-protein ID=TCONS_00021388-protein|Name=TCONS_00021388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MDSYLDIPRVAWEADHEWHARRSFLESNQEFFSGDKLASLSMAWSNWIFM
GCNYGEQVQATLEDCHARLPPEVDENIKKLLDAATPKVKFVKASGSGEDL
GTRTGPPQGGKRKLNTPQEHYSKYFKKDTTESENTTTTTTTNIDVNHPNH
IRGLKIYLPSKEMENQIAGESGNYILSTIGAVNESCQKCKKINEYVEEMT
LDKYKCTLYVDGRMIAQSYGENKKDTKRLCAEKGLDYLKKYQEIVYKDRI
NHDKVTEIDKGNLVKESYENAPKIADDNLGSKLLKKMGWDGSSGVGKYSH
GISEPVFVESVENRVGFGHSYDDRTVRKSSVESTLLDFLRDSKQEEIKFS
KNLTKEDRALVHRLCTKYHLKHKSFGKNEDRYLLVSKQ
Run BLAST on NCBI

transcript from alignment at sc0000385:464253..476599-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021388 ID=TCONS_00021388|Name=TCONS_00021388|organism=Clytia hemisphaerica|type=transcript|length=12347bp|location=Sequence derived from alignment at sc0000385:464253..476599- (Clytia hemisphaerica)
TTCAGAACTAACCAGTAAAAAAAGAATAATAGAAAATAAGAATTATGGAT
TCATATTTGGACATACCACGTGTGGCTTGGGAAGCTGATCACGAATGGCA
TGCACGAAGATCCTTTCTAGAATCCAATCAAGAGTTCTTCAGTGGTGATA
AACTAGCATCTTTGTCAATGGCATGGAGTAATTGGATATTCATGGGATGT
AACTATGGCGAACAAGTACAAGGTATATGAGAATTTCTTGATTTTTTAAT
TTTGAAAGATGCCATTTTTGCAGGAGACTTTCCGGATTTGGAGCTCTCTG
ACATTTTGGTGTGTTGAAAGCGATTACTATGTATTACAAGGCATTTTCCA
GGGTGATTTTCCAAGGTTTTTCTTGGTAATCGGCTTCTAAGTAGGGGGTG
GGAAAATCACCTAGTTAAGAGGTGATGGTAGGGTTAGTACCCTTTATGGC
TATAAGTATGCCGCGGCCATAATATACCCCCAGGCTTATACCAGAGAGGA
ATTTGTTTCTGTAAGAACATCAATAAAATAAATTTCTGACGTCTGACGTC
AATCATCACACTGGTACACTGGTACCCAGCCTCTTTGCGCTTTAAGGATG
TTGATAATAATAGGTGTATGTAGAAAATTTAATATTTCGTTTTTCGGGGA
CTGATTTTGTGGATGATTGATTTCTGGAAACCAGTGAAATTCCTGAAAAA
TTTGAAATTTGGTGAGGAATTTTACTTTAATTTAGTGAGTCAGCATTTTT
TAAATTTCGGGGACAACGAATAACTAAAGGTATATTATTGCAATTTCTGT
CTTTTCATAGCAACATTAGAAGATTGTCATGCTAGACTGCCACCAGAAGT
GGATGAGAACATCAAAAAGCTTTTAGATGCTGCCACACCCAAAGTGAAAT
TTGTCAAAGCGTCTGGTAGTGGTGAAGATCTAGGCACACGAACGGGTCCC
CCGCAAGGTAAAAAGAAGTAAGAACTCTATTGTTCTATTCTTTTACTATC
CATATCTCACAAGCCTGCAATTTAAAAAAAAAATTAGACCCGAATACTCA
CAAAGTGATGAAAATAAGAACACTTTATGACTTAGTTTTGACTTAAATCC
CAGAAAAGCTAAGAACAACTTAAGGTCTACGTTCTTATGAAAATGAAACA
GAGAAAAACGTGTATTTCAACGAAAGAACCCCTTTTTTATAATCTTAAAT
TTGCTTAATATAGAAATCTAGATGATGAAAGCAATTTTAACGAAGCTATA
CCAAATCACTGTCGTTTTACGGGATGGATATCTCTAATTTTCTTTTCGAT
TTTCTCAAACGTATTTTGATAGTTATTGTGTCTGACGTATCTTTGATCTA
TTTATGGACTTTAAATAGCATTTTTAACGCTAACTAGGGTGATGTTTAAT
GTTTTTTCCCAATATTTTAAAAAACTTCTTAGGTTTGCTTAGGTGCTCTC
CCCGATTAGTTTTTATTTATTGTCTACGTTTCTATATTTTCAAGGTGGTA
AAAGAAAACTAAACACACCCCAAGAACATTATTCAAAATATTTCAAAAAA
GACACAACAGAATCAGAAAACACAACAACAACAACAACAACAAATATAGA
CGTGAACCATCCAAACCATATCCGAGGATTAAAGATTTATTTACCATCAA
AAGAAATGGAGAATCAAATAGCTGGGGAATCTGGAAATTACATATTGAGT
ACGATCGGTGCTGTAAACGAAAGTTGTCAAAAATGCAAGAAAATAAATGA
ATACGTCGAAGAAATGACGTTAGATAAGTATAAGTGTACGTTATACGTAG
ACGGGCGTATGATAGCGCAATCTTACGGGGAAAACAAGAAAGATACTAAA
AGACTCTGTGCTGAAAAGGGACTTGATTATTTGAAGAAATACCAGGAGAT
TGTTTACAAAGATCGAATCAACCATGATAAAGTAACTGAAATTGACAAGG
GGAATTTAGTTAAGGAATCTTATGAAAATGCACCCAAGATTGCTGATGAT
AACTTAGGTAGTAAATTGTTAAAGAAAATGGGCTGGGACGGGAGTAGCGG
TGTTGGTAAGTACTCGCACGGCATTAGTGAACCCGTTTTTGTTGAATCCG
TTGAAAATCGGGTTGGTTTCGGACACAGCTATGACGATCGGACTGTCCGA
AAAAGTTCAGTGGAAAGCACTTTGTTGGATTTCTTAAGAGACTCCAAACA
AGAGGAGATTAAGTTTTCAAAGAACTTAACGAAAGAAGATCGTGCCTTGG
TTCATCGGCTTTGTACTAAATATCATCTGAAGCATAAATCGTTTGGTAAA
AATGAGGATCGTTATTTATTAGTCAGTAAACAGTAGTTTTTCTTCTTGTA
ATAATACATTATACACGTTTTGTTATAAGAACAAAAGAACATTAGACTTC
GATGTCCAAAATATTATGAACAGTTTAAGACTAAAACATGTTGAACGTTC
TTATAAGAAAACATGTATCCACTTTTTGGACCTACCCCGCCGGTGGGTGG
AGGTCCTTTAAATTAACCGATGTTAGTCCGTTCGTCCGTCCGTTCGTCTG
TTTGTCTGTTGCCAATCTCGGGATTGGCTCATTAGTTTTTTCTGATTTTT
TGCACAGTGATGCAAAATGGTGATTCCCAGAAAGTGACGGAGCTCGATTT
TCGAAAAGAAAACATTCTGGGCAAATTTGAGCCTAAAAGTGCTTAAAATG
GGTTTTTTTGGACTTTGTGCGAAATCACTTCATTATAGTTTTTTCTGATT
TTATTCATAAAGATGGAAGGTTCTCTAAAATACGGCTGAATCAGTTTTTT
TCGGAAATTTTTTTTCGGCCGTATAAATCGGGTTTTCTTGTTTAGGCAAA
TTCCCTTTTGCCATATTTAGGGAAAATTAGCATTTCTCGAGATTGGCTTG
GTATTTTTTCTTATTTTTTACCTAGCGATTTAAAATGGTAATATTTAATT
TCTGATTGAGGCCGATTTTGGAAAAAATGATTTTTTGGATAAATTTGGAT
CTTCACTAGGGAAATCACGCTAAAATATTTATTCACCCCAGTATCTACGA
CTATAAGTCATACGACTTTAACTATACTTCACAGTTCGATTTTAATTTGA
GCTGTGATACCATGAAGGTAATCTATTCAAGCTGCTCGCTACACTTTTTT
ACTCTCTTGCTATCTGTCCTATTTTTATCTGATTCTCATCATCAGGTAGG
TCCATTGAGCATTTTGCTTGTTCTACTTATCACTATCTAACTTTCATCAT
CAGGTAGGTTCAGCATCTAGCTTGTTATCCCTAGTTTTATTTTATTTTCT
ATTTTCACCTCTGCTATATATAAAGTGTATGTGTGATTTTGTTCGAAAGT
GAGAAAATCGATTAAATATTTGTAGTTGTTAATTGTATTTACTGTGAAAC
TAAAAATTTTTATGCTTTTTCCATTTTTATGTATTTTGCCACCCCTAATA
AAAGCTTTAAAGCTTGGTATTTAAAAAAAGTGGCGTTTAACTCTATTCGC
GTGCGTTTAACACTAGACGCACGCGTTTAACATTAAACGCCCGTACCTAG
TGAAAAAAGTTAAACGCACATATCTAAAAATTTTGATACGTGCGACGTTT
CACTTTTTCCCTCTTTTTCGATATCTCTTTGCTAAAAAGCTCCCAGTGAG
TACATAGATGATCTAAAAACTTAAACGCCCGTGACTAACATTAGACGTGC
GCGACAACTGTTAAACGTCACTTTTTTAATACGTGAGTACCGCGGTGCAT
GTCTGGGATCGAAGTCTTTACAAGTTTACACTACTACCGGCTTAGTGAAG
CTCAAATTACAGATGTAGAACGATAAACTTGGTATACATTTAAAATGTGT
AGTCGATGCTGCTTGAATGTTTTCCTTTTACTTATTTCAAACTTTATACG
CGTACTCTTAGGTGCCAAATAAACGGGACCCCCCGTTTATAAATTTTTGA
AAAAATTCCCAGCTCCCAAAAGAAAAGTTTCTTGTTTTACTCTAAAAAGC
CTAAATTTGGTCTATTTTGACACTTTTTAGGGTTTTTAAAAAGTCCATTT
TCCAACCCCCCGGTAATTAGGTCCCCCTCGTTTATTTGATTTGAAAAATT
TTTCCAACCCCTCCCCCCCCCCGTTTATTTGGCACCTAAGAGTAGTAACC
TTCAATACATTTTCTTTCTAGAGAAAAATAAAAAATACAAGAACTACAAA
TTCCAGGATATAAAAATTTGATTAAGAAAATGAGTCGAGCTCACATGCTT
TATGATGACACAAAAATGTCAGCATTGCCTGTTAAAATCACCAGATTGCA
AACAGCTTGGGAACCGAACACAATCTTTAAAATGAGGTATCCATTTATTT
TATTCTTTTGAAATCAAATTAATGCTAAACAAAAAACATACATAAATATA
AATAATTCCGGCGATATTGTTAATTTGGTGCTTTCCCAATTTTGCTTGGT
AAATTCCTGAAAATAATGTGGAAAATTTATCAAATATAGACTTTTATATA
CTTTTTAGTTTTTTTTTTATTACTTAGTAATTAAAGAAAAGAGTTTTTGG
TCTGACGGATTGTATGATGTTTATTATGAATATTCTAACTTTGGCAAGAG
AGAAGCGGATCCTCCGATATCATCGGACCGGGCCCCATCTTCCCTAGATA
GAGAAATCACAGCGCTTACCAGACATTGTACTTTGTGCTCGCGACACATC
GGAGCCGTGCTGTATTGACGATGATACTCGCACAGTACGGGAGAAACTTG
CGTTCTCGTAGATACTGAACATATCAGTACCATCACCACACCGCATTCAA
TGTTCGGCATATCTCCCCATACTCTTGTATCAAAGTTATGGTACCCTATT
CCCTTCACATGGTATGGGTTGACCCGGGCCAAGGTACATTCACTTGCCAA
GTGAATCGTAGCACCAAGTGGGAATCGAACCCTGACCTCCAGCACGGAAG
TCAAGAACGATGACCACTACACTACTGTGCCTTAAAAATAAAAACACAAT
TTCCTTCTTTCCTCTTTTCAGTGGTACAGGATACATTATTGAAGCCAATA
TTTTAGGAAAATCTAAACACCAAATCGTGGAAAGCAGTAAAAAGGTGAGT
AAGTCTAGTTTGTCTGCGATCCAAAAGCTCCTCTTTCAATAGCTATCTAC
CCGAAGGGGCAGGGGGGATTGGTACTAAAATCCAAGACACATATATGAGT
ACTAAAAGGTTTTTTGACATACCCCGACCTAATTTTTGAAAAAGGAATTT
TAGTACACAATGTACCCTCTTCAATTTTATTTAATTGCTGAGCTTCAAGC
AGAGAGACATCGAGTACAATTTTTTTATTTTATACTAAGTACGAAGTCTT
TGGTATGACCCGACCTGGGATTAAACCCATTACTTTGCGTACCGTAGTCG
AACCATTGAGTTTCAAGCCCGAAGGGCTAGAGGTCAATCTCTAACCTTTC
TCAGGCAAGAAAAATTGAAGCCTTAAAATATGCGCCGTATTTTTGATGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCAGGCGGGTCGCTCAAGGCCGCGCAACTTTGGTAGGATT
TGTTGGCTTCAAATCCTACCAAAGAGATTGACCTCTAGCCCTTCGGGCTT
GAAACTCAATGAGTCGAACACTCTACCTTTGTAATTTGTTGACTCATAAA
ATGTAAAATGGTAAAGTTTACCTATTTTATCTATTTGGGAACGCTGTCAT
GTGCCGGGGTAGTAACTGAATTTTCTGCGGTCTTTTACTTTAAAAAACTC
GTGTCTAAGGCGAAAACAACTTTTCCTGAACGTATGACAGGGAAAACTGT
TTTGTCAAGAGAGATTTCAACATTTTAAGAGTTTTCGGTACTTAGTTGGA
AACTTTTAGAAGACCATTATTCAATTTTATCAAAACAAAAATATTAAAAT
CCCAATTTGTAAATTTGAGGTTTTCGACCTACCTGGAGGTCCTACCTGGA
GGTCCTATAAGTTAACCTGTGTTCGTCCGTTCGTCTATTACCAACTTTTC
TCGGGATTGAATACATTGGATTGGTACAAAGGTGCAAAGACGTAGAATTA
CAGTGTGCTAAAAATGTTGGGCCCTAAAAAGGGGTTTTTCCAATTCCTTA
GTTACCGAGGGGGGGGGGAGCACTTCATCAAGATTAGAACAGGGACGTGC
CGCTGGTCAGGGTCCCTTTTTAGGCTCTGAAGATATCTGGTGACAGGTTC
CAAAATTTACTAATTTTTAAGTTGTGTTTCTTACAGGGTCGGCTTTTGGT
AATTTTGGTCACTTTTCAGGGTCGAAACTTTTCGATTTTTCTTTCTGACA
GAGTCACAAATTTACCAAATATTCGTATCTGACAGGGTCCGTTTTTCAAC
CTCCAGCGGCACGTCCCCGTCGACCGTCAAGGTCAGTGCCCCCCTGGGCC
TTAGTTGACATCTAACTTTAATTTGGTACTAAAAAAGGTACCAAAAAAGC
CTCGTGTCGAGTCAAAAATTTTATAATGAAATTATAAAAATGTAACGAAT
TTTTTTTTTTTTTTTCAGTTTCATTACATTTGCTTGCACATCTCCATACT
AAAATCTTTTAAACGAAAATTTGACTCGAATGGCGAAGAAATTGAGCCAG
ACCTTGGTGACAAAAAGAAGGTTAATACTGGATATTTAATGTCCTCTTAT
AGTAAGTGATATTAAAACAGGCGTTTGTCCCACAGATATCTTATATAAAA
CACTAGATGGAACTATCCCGTCCCTAGCTGAAGCAAAATAATTCGCAATT
TCATAATTCGGTACCGGCAATTTGATCTATCAAGCCTATCTTTCGCCTCG
TCGCTTCGCGTCATTAAGGTTTTTTTGCTTGGTTGAATAAATTACCGGTA
CCGAACTGTGACCTAGTGTGACCTACTTTCAGCAAAGATGGCGACCATAG
CTTTATCTAGTGTTTTATAAAGATGTCTATGGTTTGTCCCTTAATGTATT
AATACTTAAGTTGAAATTCTTTGGCCTTTTTGCTCATTCAGACAAATTGT
TAAACTGATATTTCAAAGCTTTCGATAACTTAACAATTTGTGTGCTGTGG
CACAAGCTCTTTCCAAGAAAAGGAAAGGTCGGTTGAAGGTTGAAGGTTTC
TTTTTCTGCTTTCTGATAATTTTTGTTAGGGGAAGGAGTATGTAGTCTCC
AAAGGGGATTACTAACTTTTTACCCGCGACCTTAATTTTAATAAATTTCG
TTGATTTCCTTTTGAAATAATTTTCTTGATTTGTCTGAATTCTTTCGACT
GTAATAAAAAACAACGTTAAAATTGTTGGAATTGAAATTGTTACAGATAC
TGGATTAATATTAATAACTTCTTTCAATTTTACAGAGGATGTTTCAAAAG
AAGGTGAGGATGTTATAAAACCAGCGGAGATGAAGAAACTGTTATATACT
TCAAAAGACTTGGAAAACATTCTTGATGGCAAGTTACAGGCCTATAATCA
CGCGAACTACGTTTCAGCCATCTGGTGCGAAGAAAAAAGTTTAGAAGGGG
TCGAATTACCAAATGGCTCGAAAGTCAGATTAAGAACGAAAGGAAACGGC
TGTTATTTAGGTGAGTAATGCGTTATTTCTTGTTACTCACGCGAACCGAA
CGTTCCTTTTTTGGTAGGTTGGTCTGTTAGCGCAAAAAAATAATTAAGAT
GGTGATAAAAATATAACTTTTAAAAGCGCCTTTTTAAATAACTTGGGCGT
TGATCATCTATTATTTATACAAAGAATCTCGTATAATATCATTTTGTAAC
TAAAAATTTACACGTTTTCTTTTATAAGAACATCCAAAATTTTTGAAGCC
TACGGATGTTCTTAACTTTTTGAGTTTCAAGCCTAAAAATTTTCTTAACA
CGTTCTTATTTTTCCCACTTTTTATGTATTTTTGTCCATTTTCCTAAAGA
AATTAGCTGTTTCCGAGTCCGCGAAGCCTTAAAATGTTCTTAACTTGTTC
TTAACATTTTGGCCATCGAACGCAAGGCTTCTTATATAGTTTGTTCTTAT
TAAAAAAAAACGTTTACCCTTTAAGAATCAATCATATGCTTGGATGAAGA
ATTAACGACTAAACAGAATTTCACAACACACGATTCAGTGGGTGGCTCAT
GGACTGACAAAGTGTTGAATACCAAAGATACCAAGGGTGCGCAATCACAT
TTAAGTCAAGAGAGTGAGGCCGTTGATGATGACGAATGGGTAAGTGTGTT
TTATTTACCTTAAAGGAAAAACATTTATTTTGGGGAACATAGTCTAGCAA
GCTAGACGCCTAATTCCTACATAGTAGAAATAAAGCAAAAAGTAACGGGA
GTCAGTGAACAAATTTTAGTTTATACAAACTAAATTCTGTAACAATAATC
GTATAATCATATAACGCATATACTACTGTATTTTATAAACGACTCCAGTC
TACGGACGGCTTGAAAATTAGCTTTGGCGGGAATTTAATTTGGTGGACAA
AGGATATTTTTTGCCCAAGAACACTATTTAATATGAAAACCTGTTTTAAG
ACATGAAATAGCACACAATACGGAGAATGAGTATAATAATTTAAATTTGG
CGGACATTTGATTTTGCAGATGGCGGGAAAAAATTAGATTTGGCAGGAAC
TTGATGCCAAATTAAGTTTCTGCAAAAATGTTTTCCTTTAAAAGGTATTT
TATCATGATCTGAAGTTGATCGAGATTATTATTGCAATTGACCCTCCCTA
ATTCGATCTTCAAGGGACCAAAAAGAATTTTCTTCGAATTAGAGACAGAT
TCGAATAACAGAGAGTAATTTATACCAATCCCCAGCTGGGGTAGCATTTT
TTTTAATTCGAATAACATGAAGATTCGAATTAGAGAGAGTTGACTGTACT
TACGAGCAACAAATTTTCATTATTCTAGGACTATAAATCTTCACCGTATC
CACTCTTGCTAGATCTGTTCTACTCCCGCATAAAATTTTTCTAGCAAACC
ATGGCAAACATTAGTTTCATCAAAGCAGTTGCCTAAAACAACGTTTCCAC
CAAGCTCAAAAGCAAAGAAGCTTGCCTAAAATCAGAACATGAAAACAAAC
TCGTATAGAATTTTTAACTTCATGTCGAGTTCTAATTAAAACTTAAATGC
AAAAAGAATTCCCAAAGCATTGTCATGTTGTTACAAGACTGTAGAGGAAT
TAAGAAATTCAACAAACAAAGTTCTGCAAGAGGACTGCATTTTCTTTCAA
TTATTATATATCTTAAAATGGTAGGACAACTTTACACTGATAAACTCGAC
ATTTAAACTAATCCTGAAATAGTAATTAGTGATAGTTATGAAATATTTTC
GTCTTGTCCTGGTACGGAATGGATAAGTACTGCTATTGCTGGTGTCCCTG
GCGGTGGCTCACTGCTTCTCTTATTGCTATTTCCATCGCCAATTGCATCA
CCATCATTTACGGTATTTCTTCTTGAAATTCCTTTTTGATTGTAGTACAA
ATATATAATAGCTTTTATACTTATGGTTAACACGTAGACACGGCTGAAAT
ACATCAGTGTGTTAATAGTTGATATTGGTAAGTCAAATCTGTCAACTATA
GTATACAAAGTCATTTTCAGTAACATCGGTACTGAAGTTAGTACAGTCAA
AATTAATGTGATTTTCTGAAGTTTTTTAACTTGTAGCATAGTTTGTGTTG
AGGAAGTTGATTCTACATTTTCATCTGTCGTGTTTTGCTGGGAATTGCTG
ACTTTATAGCTTTTGTAAGCATAAACCAAGGCAAATATACTCAACGAAAA
GGTGTAGAGAAGACCTACTGTAAGAGATAGCCGAGAATTTAAAAGCACTG
TTATCAGTACCTCTGTGAAAGTGAATAGGGTTAGCACCATGAAGAAAGCA
ATTGTGCTTCGTATCATTTTTTTCTTATCTTGTGTTGTCTGGATAGTCCT
GATGCTCCTTAATTTCATCAGGTTATGTCTCACGATAACGATAAGTGCAG
AGATGCTAACTTTAGTTGTCGTGCTATGCCAGCAATAGTTCATTTTCAAT
AGTGAGCACCTGTATTGATTGTCTCTCATTGTATTATAGAAGATAGACGA
ATTGAATATATAATTTATTAAAATACCACAGTTTGATAGAAAGAAAAGGA
GGAAAAATTTGGCTTGGAATGTTTGGATTTTCTTTTGTGCCACCATTATG
GATACAGTTAATGTTAAAACGAACAACGATATTATATAATATGTCAGTAA
AACATTGTTGTTGTCCCATTCTTGAAATTTCAAGAAGCAAAGAGGTTCTT
TCGTACTGTTTGTTGTATTTACGGTGGTCATGGTGACTCTGGTTGACTGA
CCTTCTCTTCTCACCGATCTATTTCTTATCTTTGAAACCTCGACTTTATC
TATCTGTAATTTGTACTGAAATGTCAAAAGTGTTAGTTAAGATTTGAATT
TCCAACCCCACAAACGGGACCAGGTTGAGTTTACCAGTAGGAGAATGACG
TCATACATAATGATATCATTAGAATATCAACGAAACGAATTTCATCTGAC
GTCAATTCCTCAAGTTAAACTCGAATCCAGTTTCCTAACGTGTTAAGGAT
TGATCATATCGTTGATAGGGTTGATAGGATTCATTGGAGAAATGGGATTT
TCCAGAAAAAAATTTGAATATTACAAGTTACCCCCGGACATTGTGAATTT
TGACAACCCCCCCCCCCCCCGAACAAGCGTCAGTTGACCCCGTGTGGACA
TTAGAAATAACCCCCAGACAGAGCAAGTTTACCCCCCGGACAGGTCAAAT
TTTGTAGATTTTTCACTACCCCCCCCTCCCGGACATTTTCTGGAAGAGCC
CAAAATTCGACTACCCCTTATCATAAACTAGTCCCAATTTGAAATGAGGA
GCATTTGCATCGTCCATGATAAATACAGCATCAAAAATCTTCAAAACGCT
GTGAAAGTATATCAATGTATTTTACTGATAATGTATATCAATTTGTTACT
GATGATATATTTTTATCAAGCATTTTTTTTTCCGTTCCCCATTTAACTTT
ACGGGGGTATCGGTATCCGCTTGTTTATTCTTTTCAGGCTCTTGTTTTTC
ATTCACCACTTCTCGGGGCTTTCACCTGCTTTTTCCCCCTCTCTCTCTCT
TTCTTTAAGCTTTTTTCACATGCACGTTAAATCTTACTCAAGACGTTACG
GAAAATCGTTTGTAAGGCCGTCTTTTGGGAATTTCCCCGACTTTACGTAG
AGTTTTTATTGATTAAGAGGGTCTTACGTGACTTTTTCTTCCGTTCAAAA
CTTTTTGAACGTAAGAAAACTCTACTTAAGGCCTTAAAACACTACGTAAG
CTTAGGGAAATTCTCCATTCTCTAAGGTCTTAAGTAAAATTTTACTTGCA
TGTGAAAAAAGCTTTATGCACAGATTAGAACACTTAAAATGGATGTTTAA
GCAAAAAAGTGTTACAAAATACAGAGTGGTAACTTATTTGCAAATTTAGT
CTCTCACAGGTTCAATCCGGTCCGCATATACCCTCCATTTTCCAACTCTA
GTAGCCCCGGATCTCTTGTAAAAATATATCAATTCAAAAGTGCAAAAATA
GAGTGGTATCTTTCTGACAAATTTAGAAATATAACTATTGAATGATAAAT
ACGTTCAGAGGGTCGTCAGATTTTACGAGATCGCAGTTTCCAGCCCAAAA
AGAGATGATACTAAATTTGAATTTTTAATGTCATTATCCCAGTATACTCT
CACGCGGACTCAACACTAAAGAAACGTTTCAGGTGAAAATGATTGACCGA
TTAAAGTTTTTCACCCGGTGCGGGGGCTCGCGGGCGTTCTCGGCTTCGTT
GAATCTCTTCTTTGGCGGATATAGTATATTTTTTATATAAAATTATCTGG
ATAACTATAATCTTTATTGTCACTGTTCTTCAGAATGCTATATTTTGAGG
GTAAAGAGAGAGTCCTTTAATCTCTTTTCTTTTCTTCTTCAGGATGATTA
ACGGATGTCGCAATCATGTCCGATTCGGTAAGATAATAATTTGATAGAAA
TACTCTAGTTGGCGCACAACGCTGTCTAGCGTCATTTGAACATTGTTTTA
ACGTTCAGATAACATCATTTGAACATCGTTTTACCGTTCAGAAAACGTCA
TTTGAACATTGTTTTAACGTTCAGAAAACATCATTTGAACATTGTTT

Coding sequence (CDS) from alignment at sc0000385:464253..476599-

>TCONS_00021388 ID=TCONS_00021388|Name=TCONS_00021388|organism=Clytia hemisphaerica|type=CDS|length=3501bp|location=Sequence derived from alignment at sc0000385:464253..476599- (Clytia hemisphaerica)
GTGGTAAAAGAAAACTAAACACACCCCAAGAACATTATTCAAAATATTTC
AAAAAAGACACAACAGAATCAGAAAACACAACAACAACAACAACAACAAA
TATAGACGTGAACCATCCAAACCATATCCGAGGATTAAAGATTTATTTAC
CATCAAAAGAAATGGAGAATCAAATAGCTGGGGAATCTGGAAATTACATA
TTGAGTACGATCGGTGCTGTAAACGAAAGTTGTCAAAAATGCAAGAAAAT
AAATGAATACGTCGAAGAAATGACGTTAGATAAGTATAAGTGTACGTTAT
ACGTAGACGGGCGTATGATAGCGCAATCTTACGGGGAAAACAAGAAAGAT
ACTAAAAGACTCTGTGCTGAAAAGGGACTTGATTATTTGAAGAAATACCA
GGAGATTGTTTACAAAGATCGAATCAACCATGATAAAGTAACTGAAATTG
ACAAGGGGAATTTAGTTAAGGAATCTTATGAAAATGCACCCAAGATTGCT
GATGATAACTTAGGTAGTAAATTGTTAAAGAAAATGGGCTGGGACGGGAG
TAGCGGTGTTGGTAAGTACTCGCACGGCATTAGTGAACCCGTTTTTGTTG
AATCCGTTGAAAATCGGGTTGGTTTCGGACACAGCTATGACGATCGGACT
GTCCGAAAAAGTTCAGTGGAAAGCACTTTGTTGGATTTCTTAAGAGACTC
CAAACAAGAGGAGATTAAGTTTTCAAAGAACTTAACGAAAGAAGATCGTG
CCTTGGTTCATCGGCTTTGTACTAAATATCATCTGAAGCATAAATCGTTT
GGTAAAAATGAGGATCGTTATTTATTAGTCAGTAAACAGTAGCAACATTA
GAAGATTGTCATGCTAGACTGCCACCAGAAGTGGATGAGAACATCAAAAA
GCTTTTAGATGCTGCCACACCCAAAGTGAAATTTGTCAAAGCGTCTGGTA
GTGGTGAAGATCTAGGCACACGAACGGGTCCCCCGCAAGATGGATTCATA
TTTGGACATACCACGTGTGGCTTGGGAAGCTGATCACGAATGGCATGCAC
GAAGATCCTTTCTAGAATCCAATCAAGAGTTCTTCAGTGGTGATAAACTA
GCATCTTTGTCAATGGCATGGAGTAATTGGATATTCATGGGATGTAACTA
TGGCGAACAAGTACAAGGTGGTAAAAGAAAACTAAACACACCCCAAGAAC
ATTATTCAAAATATTTCAAAAAAGACACAACAGAATCAGAAAACACAACA
ACAACAACAACAACAAATATAGACGTGAACCATCCAAACCATATCCGAGG
ATTAAAGATTTATTTACCATCAAAAGAAATGGAGAATCAAATAGCTGGGG
AATCTGGAAATTACATATTGAGTACGATCGGTGCTGTAAACGAAAGTTGT
CAAAAATGCAAGAAAATAAATGAATACGTCGAAGAAATGACGTTAGATAA
GTATAAGTGTACGTTATACGTAGACGGGCGTATGATAGCGCAATCTTACG
GGGAAAACAAGAAAGATACTAAAAGACTCTGTGCTGAAAAGGGACTTGAT
TATTTGAAGAAATACCAGGAGATTGTTTACAAAGATCGAATCAACCATGA
TAAAGTAACTGAAATTGACAAGGGGAATTTAGTTAAGGAATCTTATGAAA
ATGCACCCAAGATTGCTGATGATAACTTAGGTAGTAAATTGTTAAAGAAA
ATGGGCTGGGACGGGAGTAGCGGTGTTGGTAAGTACTCGCACGGCATTAG
TGAACCCGTTTTTGTTGAATCCGTTGAAAATCGGGTTGGTTTCGGACACA
GCTATGACGATCGGACTGTCCGAAAAAGTTCAGTGGAAAGCACTTTGTTG
GATTTCTTAAGAGACTCCAAACAAGAGGAGATTAAGTTTTCAAAGAACTT
AACGAAAGAAGATCGTGCCTTGGTTCATCGGCTTTGTACTAAATATCATC
TGAAGCATAAATCGTTTGGTAAAAATGAGGATCGTTATTTATTAGTCAGT
AAACAGTAGCAACATTAGAAGATTGTCATGCTAGACTGCCACCAGAAGTG
GATGAGAACATCAAAAAGCTTTTAGATGCTGCCACACCCAAAGTGAAATT
TGTCAAAGCGTCTGGTAGTGGTGAAGATCTAGGCACACGAACGGGTCCCC
CGCAAGATGGATTCATATTTGGACATACCACGTGTGGCTTGGGAAGCTGA
TCACGAATGGCATGCACGAAGATCCTTTCTAGAATCCAATCAAGAGTTCT
TCAGTGGTGATAAACTAGCATCTTTGTCAATGGCATGGAGTAATTGGATA
TTCATGGGATGTAACTATGGCGAACAAGTACAAGGTGGTAAAAGAAAACT
AAACACACCCCAAGAACATTATTCAAAATATTTCAAAAAAGACACAACAG
AATCAGAAAACACAACAACAACAACAACAACAAATATAGACGTGAACCAT
CCAAACCATATCCGAGGATTAAAGATTTATTTACCATCAAAAGAAATGGA
GAATCAAATAGCTGGGGAATCTGGAAATTACATATTGAGTACGATCGGTG
CTGTAAACGAAAGTTGTCAAAAATGCAAGAAAATAAATGAATACGTCGAA
GAAATGACGTTAGATAAGTATAAGTGTACGTTATACGTAGACGGGCGTAT
GATAGCGCAATCTTACGGGGAAAACAAGAAAGATACTAAAAGACTCTGTG
CTGAAAAGGGACTTGATTATTTGAAGAAATACCAGGAGATTGTTTACAAA
GATCGAATCAACCATGATAAAGTAACTGAAATTGACAAGGGGAATTTAGT
TAAGGAATCTTATGAAAATGCACCCAAGATTGCTGATGATAACTTAGGTA
GTAAATTGTTAAAGAAAATGGGCTGGGACGGGAGTAGCGGTGTTGGTAAG
TACTCGCACGGCATTAGTGAACCCGTTTTTGTTGAATCCGTTGAAAATCG
GGTTGGTTTCGGACACAGCTATGACGATCGGACTGTCCGAAAAAGTTCAG
TGGAAAGCACTTTGTTGGATTTCTTAAGAGACTCCAAACAAGAGGAGATT
AAGTTTTCAAAGAACTTAACGAAAGAAGATCGTGCCTTGGTTCATCGGCT
TTGTACTAAATATCATCTGAAGCATAAATCGTTTGGTAAAAATGAGGATC
GTTATTTATTAGTCAGTAAACAGTAGCAACATTAGAAGATTGTCATGCTA
GACTGCCACCAGAAGTGGATGAGAACATCAAAAAGCTTTTAGATGCTGCC
ACACCCAAAGTGAAATTTGTCAAAGCGTCTGGTAGTGGTGAAGATCTAGG
CACACGAACGGGTCCCCCGCAAGATGGATTCATATTTGGACATACCACGT
GTGGCTTGGGAAGCTGATCACGAATGGCATGCACGAAGATCCTTTCTAGA
ATCCAATCAAGAGTTCTTCAGTGGTGATAAACTAGCATCTTTGTCAATGG
CATGGAGTAATTGGATATTCATGGGATGTAACTATGGCGAACAAGTACAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011973XLOC_011973Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021388-proteinTCONS_00021388-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021388-exon-sc0000385-1575043694:476378..476599TCONS_00021388-exon-sc0000385-1575043694:476378..476599Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1575043694:475643..475789TCONS_00021388-exon-sc0000385-1575043694:475643..475789Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1575043694:472264..475105TCONS_00021388-exon-sc0000385-1575043694:472264..475105Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1575043694:471506..471578TCONS_00021388-exon-sc0000385-1575043694:471506..471578Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1575043694:469749..469881TCONS_00021388-exon-sc0000385-1575043694:469749..469881Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1575043694:468840..469064TCONS_00021388-exon-sc0000385-1575043694:468840..469064Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1575043694:468211..468374TCONS_00021388-exon-sc0000385-1575043694:468211..468374Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1575043694:464359..464457TCONS_00021388-exon-sc0000385-1575043694:464359..464457Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1575043694:464253..464292TCONS_00021388-exon-sc0000385-1575043694:464253..464292Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1510915933:476378..476599TCONS_00021388-exon-sc0000385-1510915933:476378..476599Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1510915933:475643..475789TCONS_00021388-exon-sc0000385-1510915933:475643..475789Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1510915933:472264..475105TCONS_00021388-exon-sc0000385-1510915933:472264..475105Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1510915933:471506..471578TCONS_00021388-exon-sc0000385-1510915933:471506..471578Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1510915933:469749..469881TCONS_00021388-exon-sc0000385-1510915933:469749..469881Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1510915933:468840..469064TCONS_00021388-exon-sc0000385-1510915933:468840..469064Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1510915933:468211..468374TCONS_00021388-exon-sc0000385-1510915933:468211..468374Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1510915933:464359..464457TCONS_00021388-exon-sc0000385-1510915933:464359..464457Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1510915933:464253..464292TCONS_00021388-exon-sc0000385-1510915933:464253..464292Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1491911889:476378..476599TCONS_00021388-exon-sc0000385-1491911889:476378..476599Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1491911889:475643..475789TCONS_00021388-exon-sc0000385-1491911889:475643..475789Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1491911889:472264..475105TCONS_00021388-exon-sc0000385-1491911889:472264..475105Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1491911889:471506..471578TCONS_00021388-exon-sc0000385-1491911889:471506..471578Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1491911889:469749..469881TCONS_00021388-exon-sc0000385-1491911889:469749..469881Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1491911889:468840..469064TCONS_00021388-exon-sc0000385-1491911889:468840..469064Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1491911889:468211..468374TCONS_00021388-exon-sc0000385-1491911889:468211..468374Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1491911889:464359..464457TCONS_00021388-exon-sc0000385-1491911889:464359..464457Clytia hemisphaericaexon
TCONS_00021388-exon-sc0000385-1491911889:464253..464292TCONS_00021388-exon-sc0000385-1491911889:464253..464292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:464253..476599 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.79142	8.66588	3.81436	3.50495	11.056	7.05971	12.3545	15.4782	9.27769	8.34109	7.13396	4.43309	7.91352	6.8444	6.70197	8.73034	8.93919	8.17584	3.42398	4.08341	11.5686	11.8906	10.3142	11.0237	7.30841	10.5243	5.84338	3.78412	7.11694	6.83985
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
IPR001374R3H_dom
IPR021859XTBD
IPR014720dsRBD_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00021388 vs. Swiss-Prot (Human)
Match: ARPIN (Arpin OS=Homo sapiens GN=ARPIN PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.074e-38
Identity = 83/237 (35.02%), Postives = 129/237 (54.43%), Query Frame = 3 
Query: 3105 MSRAHMLYDDTKMSALPVKITRLQTAWEPNTIFKMSGTGYIIEANILGKSKHQIVES-SKKFHYICLHISILKSFKRKFDSNGEEIEPDLGDKKKVNTGYLMSSYKDVSKEGEDVIKPAEMKKLLYTSKDLENILDGKLQAYNHANYVSAIWCEEKSLEGVELPNGSKVRLRTKGNGCYLESIICLDEELTTKQNFTTHDSVGGSWTDKVLNTKDTKGAQSHLSQESEAVDDDEWDD 3812
            MSR   +Y D  +    V+  RL  AW+P       G G ++E  ++  S+H I+++  +K  Y  L+I      +RKFD+ G EIEP+    +KVNTG+LMSSYK  +K   D + P  +K L+   + L       L      ++  A W  E  +E +EL  G+ VRL+T+G+G +L+S+  L+    TK NFT     G SWTD ++  K +KGA + + ++ +  +D+EWDD
Sbjct:    1 MSR---IYHDGALRNKAVQSVRLPGAWDPAA--HQGGNGVLLEGELIDVSRHSILDTHGRKERYYVLYIRPSHIHRRKFDAKGNEIEPNFSATRKVNTGFLMSSYKVEAKGDTDRLTPEALKGLVNKPELL------ALTESLTPDHTVAFWMPESEMEVMELELGAGVRLKTRGDGPFLDSLAKLEAGTVTKCNFTGDGKTGASWTDNIMAQKCSKGAAAEIREQGDGAEDEEWDD 226
The following BLAST results are available for this feature:
BLAST of TCONS_00021388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARPIN5.074e-3835.02Arpin OS=Homo sapiens GN=ARPIN PE=1 SV=1[more]
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