TCONS_00021381 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021381
Unique Name	TCONS_00021381
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3494

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000385:392147..402951-
coding sequence from alignment at sc0000385:392147..402951-

transcript sequence

>TCONS_00021381 ID=TCONS_00021381|Name=TCONS_00021381|organism=Clytia hemisphaerica|type=transcript|length=3494bp
CGAAAGGCAAGAAGTGTTTCACACTGGCTATCCACATATATTATCCATCA
gtttattttttagaatatagagcagaaaaatatatgaaaaataggaaata
acaaaaatataaacTCAAAAATGGTGATTAATTGTTCAtttttgattgta
tttttgTTGTCAATGGTAACGGTCCATGGCATCAACGGTGAAGATATTTC
GGATAACTTGGTCAGTCAGAGTGTAAAGGATCTGAGAATTGCTGTCATTG
GCAGTGGCATTGGTGGAGCGTCGGCAACAAATTTTCTGAGgaaatCTTTG
GGAGAGACTGCTCAAATCGATGTGTTTGAGAAAAGTGATCACGTTGGTGG
CCGCCTACACATTGTGACCATCGATGGACAATCCATCGAATCTGGGGGTA
CCATCATTCACTCAAGCAATAAATACATGGTCGATTTTGTCAAGGATTTA
GGCCTTGGTACCAACGTTGCAATGTCAAACGAACGTCTTGGTATTTACAA
TGGCAAAGAATTTGTTTTCGTTGAGACCTCTACAAGCTGGTGGAACAGCA
TCAAGATGATATGGCGATATGGATTTTTCAGTCTGAAGAATATGAGTGAT
GCTTTATCTAAAATGTTGAAcgattttgttttggtttaccAAATTCAAGA
TGAAGGCAAGGCTTTCAAgACGGTACCGGACTTGTTGAAAGCCCTTGGTG
GTGATTACTTTGTTGAATGCACTGATAAAACAAGTCGTCAAATTATGAAA
GAAAAGGGAGTTGGAGACGAATTGATTAACGAGTTATTAACGGCTGTTTC
CAGAAATAATTACGGCCAATCAACTGANAGTTGGAGACGAATTGATCAAC
GAGTTATTAACGGCTGTTTCCAGAAATAATTACGGCCAATCAACTGATGA
GATCAATGGATTCACTGGTTATGTGTCACTAGCTGGAGCTCAAGGAGGGT
CATTATGGAATGTCAAAGGTGGAAATTATCAAGTCCCTCAACGTCTCTTA
CAAAAATCGAAAGCTGAAGTTCATATCAACACAAAGATCACGTCAATCAA
GAAACATATTGACGAAAGCTCTGGCAAGATTGCGTATTATCTTGAAGGTG
CCGGCAATGAAACTCCCTATGATGCTGTTATTGTTGCAGCTCCTTTAGAA
ATCCCTTCTTACTTTATTACGTGTGCTGAATGCAAGGATTGGCCAAAACA
AAGTGATATGGGTAGGTACCAGCAAACGATTGCCAATTTCATACACAAAC
CTGTTGATTACAAATATTTTGGATATAAGTCAGCCGAGAAGCTTCCTGAT
ATCATATTCACTACTGAAGAGGAATCGCTGAATTTCACCACTATCGAATC
GCACGGGAATGTCAACGGCGATCCGATCAAACCACCTGTTTACAAAGTCT
TCTCCAGAAAACCACTGACGAGTGAAATGATCAATCAGTTGTTCATTACG
GGAAGCCAAACGCCTGAATATACATCCGTCAATTGGTTAGCCTATCCACA
TTATTCTCCACCGGAGAAGTTTTTACCGTTCGAATTGGACGAAGGAGTGT
TTTATGTGAATGCAATTGAACGAGCAGCTTCGGCAATGGAGATGAGTGCT
ATTGGTGGACGCAATGCTGCTTTGTTAGCTGTTAACTATTTGGAAAGTCA
AAAACAGAGTCAGCGAGTTCACTCTTAAATGTTCAAAACATACGTAATTA
TTCATGATGATCTTGACGTAattttttatacggaaacacccaGTTTAAAA
GCTGCCGGACAACCCGGAGTGTTTTctgaaaacattacgtaatgaatatc
acgaatgaccaacgttcttttcttctctttgaaaaatcttgccGTTGTGT
CGGTCTGTTTTGGTTAGAGATATTACAATTATTTGGTGTTAtatcaataa
aatgatttttttaacaattaggAAATGGTACTcggtgcctctctgcttga
tactCAGCTACTAATCAgggtcaagttgaacatttacaagaatttttgtc
attggattggtcgttaactattcaaacaaaaacttttattatatttttct
aaagaacgcgtcatctctattgttttgaataaccaattatgtgagcatct
tgtaaaaacttcaacaCAACTGACTAATCAGAACGGTTAATGGTGTGTGG
AGAAATCTaaggaaaggagtggcgccctcccctgaCCTCGGGTAGTCAAC
TATAGGAAAAGGGAGCCTGGGGGAGCCTTCACGTTGTCATCGACTGCACT
CGTAAACTTGCATACCTTGTcgaccctttttacgccggccctaatttaac
gccggcccttattacgccacagcctaattttgggcttacgccaattaggg
ccgttaataacgccGAAATTGTGActacttatgcttcaaattagtaaata
atgatTAAAacttacattaaaatgtcatttttcagtagtaaactgttgaa
aattccatcgaaaatcactgattttaaatatattgaatatttcactgaag
ctttaaatatggagtaaaacaatggataattttcgtcttcgaatcatacc
taaaatcctttaaattgagaaataatattaaaaggttaaaattgtaaaat
cttGACCCTTTTTatgccggcccttattacgccacgagccaaaaaataac
gccaataagggccgatAAGATACTTGAAATAGCTCTACACTCCACTACAG
TATCATTGTGAAATAATTTCGTTTGAAACAGAATGATAAACTTTAACCGT
AGCAAACCGTTTTCtgcgaagaagagtttggtataAAGGCTAAGTTAAGA
AATGAATATAAGCACCTTCTCCTCGATGACTTCTAATTTTTTTAAGGATT
GTCAAAATTAGGAGGAATGTCACACCAATTTGGGTTAGCGGTAATTCTAC
TTTTTAAAATCTTGTCTGACAAAAATGGACTTTTAGGCGAAAAattgtag
tgtttccggaatgcgggtgaaggaaaaaagctctcatgcggccaGCCGGA
aagttttgctatattttttttgctatttttgataacttgagatcattgaa
atagagcTTTAAAGATAGCTTTTATGTataaacagtatgaagtaagccct
gaatactaatgtatcaactactaacgaacaaaacttgatttgcAAGCGGG
AAaatctaaccaaacgacgtttgatagcttgaacggttaacttgattttc
tttatgatgaaccatatagatgaaGCTATAGTCTgaggccgggtcagaaa
aaagatttttcacccggccggtctCCGggcggaaacactacattttttta
ttttagccttaatattaatttttcaaaaaaaatttaaaaacataattttt
gcattttcttagaattgtacataatttttcaaaagtttagatCATTGTTT
TCTTATattggaatattttttaaaaagcatcaTCCATCCATAGACATCGT
ATATAATTTCAGTAAGGACTATTTTCAATTACAatgttccaaaa

Run BLAST on NCBI

protein sequence of TCONS_00021381-protein

>TCONS_00021381-protein ID=TCONS_00021381-protein|Name=TCONS_00021381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MVINCSFLIVFLLSMVTVHGINGEDISDNLVSQSVKDLRIAVIGSGIGGA
SATNFLRKSLGETAQIDVFEKSDHVGGRLHIVTIDGQSIESGGTIIHSSN
KYMVDFVKDLGLGTNVAMSNERLGIYNGKEFVFVETSTSWWNSIKMIWRY
GFFSLKNMSDALSKMLNDFVLVYQIQDEGKAFKTVPDLLKALGGDYFVEC
TDKTSRQIMKEKGVGDELINELLTAVSRNNYGQSTXSWRRIDQRVINGCF
QK

Run BLAST on NCBI

transcript from alignment at sc0000385:392147..402951-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021381 ID=TCONS_00021381|Name=TCONS_00021381|organism=Clytia hemisphaerica|type=transcript|length=10805bp|location=Sequence derived from alignment at sc0000385:392147..402951- (Clytia hemisphaerica)
CGAAAGGCAAGAAGTGTTTCACACTGGCTATCCACATATATTATCCATCA
GTTTATTTTTTAGAATATAGAGCAGAAAAATATATGAAAAATAGGAAATA
ACAAAAATATAAACTCAAAAATGGTGATTAATTGTTCATTTTTGATTGTA
TTTTTGTTGTCAATGGTAACGGTCCATGGCATCAACGGTGAAGATATTTC
GGATAACTTGGTCAGTCAGAGTGTAAAGGATCTGAGAATTGCTGTCATTG
GCAGTGGCATTGGTGGAGCGTCGGCAACAAATTTTCTGAGGTACATGTCC
TTCTTGATTCGTGATATTCACGACGTAGTGTTTTATATGGAGGCACCCAA
AAAGGACCGGGTGTTTGCCACCATTTTTAAATTTAGACAATAAAACTAGT
GGCAAACGCCGGTACTATTTTGGTTGCTTCCGTAACGTTACGTAATGAAT
ATCATAAATTCACCTATTATTCTTTAAAGCGTGAGGAGACACTGGGTTCA
AGTTTATCGCGCCGCCAAGGATTGGTAGAAATATTCTAATACCTTATCGG
TGAAACATTTCGTCTTCATGTGATTTTTTGGTCACCTTTTGCCGGCAAAT
TTCCCACTACCATCTGTCTCATACTTTAATGGGATAAACTTTCGCGGGGA
TTAAATTTCGCGGTTGAGCCTAACCGCGAAATTCAAAAATTTCGCGGGAA
CTTAATTTCGCGTGTGGCACTATTGGGTTGCAATATTTTCACGATTTTTT
GACTTCTACTGTCAAATCATGCATGTTGGTTGTTGAAATACACATTATTT
GCGCTTCTTTGATGCAAGTAACCATTCAAAAAGTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCAAGTAACCATTCAAA
AAGTATTTATTTTACATATTTTGAGTATTGTTTAGAAATATTTCGCGGAT
GAGGCTCTTCCAAATTTCCAATGGGACTTAAATTCGCGGATGACACCCAA
ATCCGCGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTAATAAAG
GACTTTCATATCAATAGATTAGTATGTTATGAATTAACGTGTCCAACTGT
TCTTTTTTATCCATTTGAACCCAGTCCAGGTATGATTAATTAATATCTAA
GATTATTGAAAATGTTTGAGCAGTACAAATCATTTGATATTGTCATCAGT
TTTTATAGAAACAAACTGGGTCAAGAAATTATTTTTTTATGATAGCCTCT
CAAGTCTTTCTAAAATATTTATTGAATAATGTCTGCTTAAATCTTTTGGG
CAGGCTGAGGACTTCATTGGAATTTTCCACACCTTGATCCTTGGGTGGAT
GCATTGTTGTGTTTTTCCAAAAATTTCATTTTTTGGCTTGGGACGAGATT
TTGCGCCAGAACGAGGTCAGGCTAAAATATAGCCATACTTATTGATTTTA
ACCTTTTCAGCCCGGCAGACGTGCATACACGTCGAGCATACGTTCCGGCA
GACGTGGATAGTCGTTTTTTTGACATAGTGATCTTCTAAGTTATATTTCT
CCCATTGGCTTCTTTGCTAGCCGTAGAAGTAAAGAGAAACGGAAAGTAGA
GGTTCTAAGCTTTCTTTTGATATATGGTGATGTAATGTTTTGATCACGTG
GTGAGACAGCAGATTTCGGAAAAAAGGTAGAGAAAAACACTGAATCAAGA
TGGCGACCAAGAAATGGGTTTTCCAACCTACTGCTAAAGTTCTTGGATTT
TTTGACTGGTTTAGGCCACGTTTCTTCATGGAAACATTGTTTTTATAATG
GCAAAACATCCAGTAAGTATATCTTATATTTTTTGTTTTGTTTTTAGCAT
AAAAATTCTATTTATTTGTCATTTTGACCACTATTCTCGACAAACCATCG
GAGTCGACCCAAACTTACAGTAATTTTTACTTTTTCTTCAGGTTGGAGCA
TGGAAAGTGGACAAATTCAATGCAAAAGTGTTTTCTACACCTCATATATT
TCAAAGGAGCACCAAAGAATTTGAAAAGCCTGGATTTATGTTGTATTGCA
CTACTTCTATCCCCGAAATTCTTGGCTCTCATAACAATGTCCTGATTACA
GCTTATATGGATCAAAATGATGGCAAAACAGCCACATGGAATTATTATGA
TGACATTTAACATTCCTTATGGGCAAAAGAGACCAGATTTGATAGCAATG
AGTTTGCCTCAAAAGGCTTGCGGTTTTTGGAAACTTTGCACTATGACTAT
GACTATGCCATCTAGTTTCACGGTAGCCGATACCCTTCAAAAGCTTCAGG
AGCTAAGAATACTGACTGAAAGTGTTGCTTAGATAGTTGGGGAATACTTA
AAGTGAAAATCCCAAGCACTTTTCTGTGGCCGTTATACGGCCAGAAAACT
CAATATTTGAAGAAAAAAATTTTTTTGAGTCATAAAAAGTCGTTTTGTTG
ATTTACTAAGAAGGCCGCTAGAAATATGTCCCATTTTCTGATTAATTTTT
CCTTTACATTCACTTTAAAAACTCCAGATTTGTTAGAATAATATCGATAG
TGGAAAGTACATTCCACAATGTTTGCTCCTTTTTTATTTTGAAATCTTAC
TTTAATGAATAAAGCTTTGTTTCTTTTGTTCTTGAAGCATTTCTTTTGTT
CTTCAAGCATTTCTTTCCATCAGGGGTCGTAAGCTTTAAAAAAGACCTGT
TTTAACCAGTCTAGAAGGGCTAATTTTCAAAAATCTTCTCCCGTCGGCGC
CAACCATCGTGGCGCCTCCTTAGACACTAATTAAGGGACACTAAACTACA
GCCCTATCACACCCTAACACCTACCACTTTCAAAGTGGAGCCGCAGCCCC
TATCCATGCATGGTTAAAGTGTATTCTATTATAGTTACTAGTAAATGATA
ATTTTGTTTATGTTACGAGAGAAAAGTACTTATTTTTGTTGCATTTTAAT
TCTTGATATCATTAATAAACTCTTAACTAGGAGTCCGTTAGGGGGGGTCT
CAGATAATAGCAATGGCATGGCTGAAACTCAATTTCTAGATAAAAAAACG
GCCAGTGGGAAAAGTGCTTGGAATTTTGCCTGTAATCTTACACCATTTTT
GATGTTGTAGCTGCTTCTGGAAACACATTATCATCAAAATACTTCAAAAT
TGTATATATTGGATTTTTTTAGCCGAAATTCGTGATTTTCAGCAAAAGTG
ACCGATATTTGGGTGGCTGGTGTAACACATACAGATTTTTCTGGATGCTG
ATTTTTGGTATATTACTTCAAAATGATGTATAGATTGATAATAATAGCCA
AAGACAGATTTTTTAATTAACTTCCCCCCACTTTTTTTTGCTCTAGAAGT
GAAAAATGCAAAAAAAGTGACATTACCGCAAAACGTGAAAAAAAACTGTG
GTTTACGTGAGGCTACCATTTTTGTTGGAATATTTTATTTGGATTGGTAC
TTGGTCTAAAAGTTGTAGAATTTAATTAGCTTTTCAGGGATACCTTACTT
TTTTTCTAAAGATTCCTAGTTCTTGAGTTATTATAAAATAACCGAACATG
TCTATTTTCTGAAAAAATGTTGCGCGCTGACAGCGTGAAAATTTAAAAAG
TTGCGCGCTGGAAAGGTTAAATTGGGTTGAGGAGTGATGCAAAAGATACT
TTAGGCGTACAAACTTTCGCGAGCAGAAACTTTTTGCAAATTTTGGCCTT
TTTCCCGAAAGTTTATGCACGCGAAAATTTCTCAATAAAATTGGAAACCT
ATAAAACCTCAAAATCGTAATAAATAAATATCAAATTTTCGGCATATTTT
TATCCCTTAATGCCTTTTGAAAGTCGAAGAGCAATCGTCTTTATCGGATT
TAAGAAATACTTTTTACTTTTCATTCGAAAATTATAATTTTTATCCAACG
ATTCGCGAAAGATATTTTTTCCTCAAATTCGCGAAAGTAAATGTCGTAAA
TTCGCGATTTTTCGACCTCGCGAAAGTTTGTACTCGCAAAAGTTTGTACG
CCCAAAGTACTGGAACTGATGTGGTTAGCACTTTCGACAGTTAATCATAA
TCTTTATGAAATTTTATTTTTTAAAGGAAATCTTTGGGAGAGACTGCTCA
AATCGATGTGTTTGAGAAAAGTGATCACGTTGGTGGCCGCCTACACATTG
TGACCATCGATGGACAATCCATCGAATCTGGGGGTACCATCATTCACTCA
AGCAATAAATACATGGTCGATTTTGTCAAGGATTTAGGTATGTTATTATT
GACGCGATTTTTTATCACTCTTAACATGCTGTAGAGTACGATGAGGCGAG
GTTCTATTTTTTGGACCTACCTCCGGGTGCCCCGGTGGAGGTCCTATGAA
TTAACCTCTGTCTGTTCGTTCGTTCGTTCGTTCGTTCGTCTGTTACCAGC
TTTTCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTGGATTTTTTCGTTTCATGTCTTTGTTT
TTTTCAAACAAAAACATCATTTATAAGAATGTCCACGATTAAGCATGGTT
CAATTTTCAATGAAACTGGTACAGGAACTTTCTAAAAATCGCTAGAACAG
CCAAGAATCGCCGGATTACATGAATTTCTCGAGTTGTTCACGTATTATTC
TGCATTTTCATACTATTGTTCTCATTTTTCAATTGTCTTATTATATCAAT
CTTCAGGTAGGTCCATTCAGCATGTAGCTTGTTATTTTNTTTTCATACTA
TTGTTCTCATTTTTCAATTGTCTTATTATATCAATCTTCAGGTAGGTCCA
TTCAGCATGTAGCTTGTTTTTTTTAAAGTTGCAAGACCAGTTGCAAAAAC
ACCATCAAAAAGACAACACACGAGGCTATGACAATGGTAGTTCCCTGCCG
TAAAAACGCTTACCGCGCCCATTGGTTTATCCTTGGAAGCAAAACAGGAT
CAACTAACAACATCGACAAACAACAACTTATACAAGCAACTAGATTATTA
AGAAATATACAAAAACAACACCATATATACATAGACGACCTCAGATCCTT
TTCATCGTCCAATATATTTTTCAAAAAGTAATAGAGCTTCGAATCTATTG
GAACTCCCCGTGATTGACTGTGAATTCGAAATTTTAACCATAAAAGTATG
TCATGAGCAATCGGATATCCAAACTATCTAACAACGTCGTTTGAACGTGT
TCATCAAACGTTAGCCAGGCAAAATTCCAAGCACTTTGGTCACTGGCCTT
TTTTAGAAATTGAGTTTTGGCTTTAGGAGTAACCATTGTAGGTGGTCGGT
ACGCACTGCAGGGGCCCAAATTTTTAAAAAAAACCTCATCTTTGTTACAT
TTTTTGACACAAAATAAAAATTCTCCAAATATTGAGTTTTAAAACTCAAT
TCAAAATTGATTATTTTGGCCGTATAACGGCCACAAAAAAGTGCTCGGAA
TTTTCACTGTTACATGAATATTATGAGAGTGATGGATATTGCTATGCTAT
ATTTTTCTGTTTAGCTGAGATGCACTTAATTAAATTTTTATCAACCTGTT
AACTTCCATCACGAATTTCCAAATATTTTTTGATTTCAAAAGACCGTACA
CACCTTAACTAAGATACAAAAATGTTGATCTCGACTAATTTGTTTGGACG
GAGGGAAAAAATAAGGAAACCTTTTTCGCAGTGCTTCTAGGTCCAGCCCT
ACCAGTACAAGATCGACCAAATTAACCTACACGGACCTGCCTGAAAGATG
GAAAGGTGCCCAGAAGTTAAACTTCAAATGAATTCGCTAGAGGACAGAAT
CAAGAAAACAGTGCTAAATTTGGAGGTTCTTGGATCACTCGTTGACCAAA
AATGGTCAAAAACGGTTAAACAATCTTAAAAAAGTGGATTTGTGTCAAAT
TTTTGCATTTTTTTGACTTCTATGCTTAAAATCTCGCTGGAAAGACTCAC
TTTTGATTTTTTTTGTATGATCATGAAGCCCAATCCAATTCCTACGAGTT
AGACCAAAAATGAATGGCTTCACCCTCCTATATAGACCATGTCTGGTATA
GCCGACATTGGTATTTAAAGGGTTAAGCGATCTCATATGCCAGTTTGCAC
TTGAATTTTCATTCAAATTATTTTTCTCCCCTCCTTAAACTTTGGTAGGC
CTTGGTACCAACGTTGCAATGTCAAACGAACGTCTTGGTATTTACAATGG
CAAAGAATTTGTTTTCGTTGAGACCTCTACAAGCTGGTGGAACAGCATCA
AGATGATATGGCGATATGGATTTTTCAGTCTGAAGAATATGAGTGATGCT
TTATCTAAAATGTTGAACGATTTTGTTTTGGTTTACCAAATTCAAGATGA
AGGCAAGGCTTTCAAGTGAGAATTATATTTTCGAGGTGTTTCCACAGATA
TCTTATATAAAACACTAGGTAGAGCTTTTCCTACCCTATGTGAAGCAAAA
TAAATCGCCATCTTGAATGAAGTGACGTCAGAATTTGGCTTGCGTTATCC
TTGAATTTTTGAAGTCATTGCATTGTCAAAAAACCAAGGTATCTACTAGT
AAAGATGTCGGATTACTTTGATTCAACTGCCGTTGCTTGGGAAATACAGA
CTACAATCATGGACAAAATATTTGAGGCAAAGGGGATTTCCCTGCGAAAT
TTTAAACACCACAAATGAATTTTAAGCGCGTTAAACTACAGTTGGAGAGT
AGAACTGTAACTCTGAGTTGTACATTGAATTCACCATATTCTTGACGTAA
TGTTTTATACGAAGGCACTGCGTTTTGTTTTTTTGTTTTTTTTGATTTTG
AGTTTATCCAATGAAATTGCTATTTACTACTAATATTTACTATTTGGGTG
CTTCCGTATAAAAAGTCATGAATATCATGAATAAAATCTTTTTTCAGGAC
GGTACCGGACTTGTTGAAAGCCCTTGGTGGTGATTACTTTGTTGAATGCA
CTGATAAAACAAGTCGTCAAATTATGAAAGAAAAGGGAGTTGGAGACGAA
TTGATTAACGAGTTATTAACGGCTGTTTCCAGAAATAATTACGGCCAATC
AACTGANAGTTGGAGACGAATTGATCAACGAGTTATTAACGGCTGTTTCC
AGAAATAATTACGGCCAATCAACTGATGAGATCAATGGATTCACTGGTAA
AATATAGAGGATTTACATGTTTGGTCAAGATCATAGATTTATAAAGCCCG
AAGGGCTAAATGGCATACTTTTGCTGAAAAGTGTGCCGTGGTTAGTAGGA
AATCTTACATAAGTCACGTGACATTACAATAGAATTTTAGCGCTTGACCA
ATCAGAAGCTTCTTGGGTTTTCGAAAACAACAGCAACAATATTTTTTCCG
ATATTCACTTTTTTTTTGCCTGCGATGGCTTAAAGCACGACATCTAGCTC
TTCAGACTTTATAAATCTATGGTCAAGATGCGTAATTTACGCCATTATGG
AAACAAACGTTCGAATTTGCAGAGGCGATCCAGGCGATCCCTTACGCAAA
TCGAATTTTTGTTTCCATAATGGCGGAAATTACGTAACAAATCAAACATG
AAAAACCTTAAGTTTATTTCCATATAAATTCAGTGGTGGATTTAAAAAGG
GTTAAAAGTCACGACAAAAAGCTATAGATATCTTTGCATTTAGTTTTGAG
CCCTGTAACTCGAAAGTTATATCACGCTCTTCAATCAATTTTATAATTGT
GATCTTGTTAGACTGTATGCACCCCCTCCCTTTCATTTACAAAATAGCTT
TTACATGAGTTCTAATTTACGAATACAGGTTATGTGTCACTAGCTGGAGC
TCAAGGAGGGTCATTATGGAATGTCAAAGGTGGAAATTATCAAGTCCCTC
AACGTCTCTTACAAAAATCGAAAGCTGAAGTTCATATCAACACAAAGATC
ACGTCAATCAAGAAACATATTGACGAAAGCTCTGGCAAGATTGCGTATTA
TCTTGAAGGTGCCGGCAATGAAACTCCCTATGATGCTGTTATTGTTGCAG
CTCCTTTAGAAATCCCTTCTTACTTTATTACGTGTGCTGAATGCAAGGAT
TGGCCAAAACAAAGTGATATGGGTAGGTACCAGCAAACGATTGCCAATTT
CATACACAAACCTGTTGATTACAAATATTTTGGATATAAGTCAGCCGAGA
AGCTTCCTGATATCATATTCACTACTGAAGAGGAATCGCTGAATTTCACC
ACTATCGAATCGCACGGGAATGTCAACGGCGATCCGATCAAACCACCTGT
TTACAAAGTCTTCTCCAGAAAACCACTGACGAGTGAAATGATCAATCAGT
TGTTCATTACGGGAAGCCAAACGCCTGAATATACATCCGTCAATTGGTTA
GCCTATCCACATTATTCTCCACCGGAGAAGTTTTTACCGTTCGAATTGGA
CGAAGGAGTGTTTTATGTGAATGCAATTGAACGAGCAGCTTCGGCAATGG
AGATGAGTGCTATTGGTGGACGCAATGCTGCTTTGTTAGCTGTTAACTAT
TTGGAAAGTCAAAAACAGAGTCAGCGAGTTCACTCTTAAATGTTCAAAAC
ATACGTAATTATTCATGATGATCTTGACGTAATTTTTTATACGGAAACAC
CCAGTTTAAAAGCTGCCGGACAACCCGGAGTGTTTTCTGAAAACATTACG
TAATGAATATCACGAATGACCAACGTTCTTTTCTTCTCTTTGAAAAATCT
TGCCGTTGTGTCGGTCTGTTTTGGTTAGAGATATTACAATTATTTGGTGT
TATATCAATAAAATGATTTTTTTAACAATTAGGAAATGGTACTCGGTGCC
TCTCTGCTTGATACTCAGCTACTAATCAGGGTCAAGTTGAACATTTACAA
GAATTTTTGTCATTGGATTGGTCGTTAACTATTCAAACAAAAACTTTTAT
TATATTTTTCTAAAGAACGCGTCATCTCTATTGTTTTGAATAACCAATTA
TGTGAGCATCTTGTAAAAACTTCAACACAACTGACTAATCAGAACGGTTA
ATGGTGTGTGGAGAAATCTAAGGAAAGGAGTGGCGCCCTCCCCTGACCTC
GGGTAGTCAACTATAGGAAAAGGGAGCCTGGGGGAGCCTTCACGTTGTCA
TCGACTGCACTCGTAAACTTGCATACCTTGTCGACCCTTTTTACGCCGGC
CCTAATTTAACGCCGGCCCTTATTACGCCACAGCCTAATTTTGGGCTTAC
GCCAATTAGGGCCGTTAATAACGCCGAAATTGTGACTACTTATGCTTCAA
ATTAGTAAATAATGATTAAAACTTACATTAAAATGTCATTTTTCAGTAGT
AAACTGTTGAAAATTCCATCGAAAATCACTGATTTTAAATATATTGAATA
TTTCACTGAAGCTTTAAATATGGAGTAAAACAATGGATAATTTTCGTCTT
CGAATCATACCTAAAATCCTTTAAATTGAGAAATAATATTAAAAGGTTAA
AATTGTAAAATCTTGACCCTTTTTATGCCGGCCCTTATTACGCCACGAGC
CAAAAAATAACGCCAATAAGGGCCGATAAGATACTTGAAATAGCTCTACA
CTCCACTACAGTATCATTGTGAAATAATTTCGTTTGAAACAGAATGATAA
ACTTTAACCGTAGCAAACCGTTTTCTGCGAAGAAGAGTTTGGTATAAAGG
CTAAGTTAAGAAATGAATATAAGCACCTTCTCCTCGATGACTTCTAATTT
TTTTAAGGATTGTCAAAATTAGGAGGAATGTCACACCAATTTGGGTTAGC
GGTAATTCTACTTTTTAAAATCTTGTCTGACAAAAATGGACTTTTAGGCG
AAAAATTGTAGTGTTTCCGGAATGCGGGTGAAGGAAAAAAGCTCTCATGC
GGCCAGCCGGAAAGTTTTGCTATATTTTTTTTGCTATTTTTGATAACTTG
AGATCATTGAAATAGAGCTTTAAAGATAGCTTTTATGTATAAACAGTATG
AAGTAAGCCCTGAATACTAATGTATCAACTACTAACGAACAAAACTTGAT
TTGCAAGCGGGAAAATCTAACCAAACGACGTTTGATAGCTTGAACGGTTA
ACTTGATTTTCTTTATGATGAACCATATAGATGAAGCTATAGTCTGAGGC
CGGGTCAGAAAAAAGATTTTTCACCCGGCCGGTCTCCGGGCGGAAACACT
ACATTTTTTTATTTTAGCCTTAATATTAATTTTTCAAAAAAAATTTAAAA
ACATAATTTTTGCATTTTCTTAGAATTGTACATAATTTTTCAAAAGTTTA
GATCATTGTTTTCTTATATTGGAATATTTTTTAAAAAGCATCATCCATCC
ATAGACATCGTATATAATTTCAGTAAGGACTATTTTCAATTACAATGTTC
CAAAA

Coding sequence (CDS) from alignment at sc0000385:392147..402951-

>TCONS_00021381 ID=TCONS_00021381|Name=TCONS_00021381|organism=Clytia hemisphaerica|type=CDS|length=3036bp|location=Sequence derived from alignment at sc0000385:392147..402951- (Clytia hemisphaerica)
GACGGTACCGGACTTGTTGAAAGCCCTTGGTGGTGATTACTTTGTTGAAT
GCACTGATAAAACAAGTCGTCAAATTATGAAAGAAAAGGGAGTTGGAGAC
GAATTGATTAACGAGTTATTAACGGCTGTTTCCAGAAATAATTACGGCCA
ATCAACTGANAGTTGGAGACGAATTGATCAACGAGTTATTAACGGCTGTT
TCCAGAAATAAGCCTTGGTACCAACGTTGCAATGTCAAACGAACGTCTTG
GTATTTACAATGGCAAAGAATTTGTTTTCGTTGAGACCTCTACAAGCTGG
TGGAACAGCATCAAGATGATATGGCGATATGGATTTTTCAGTCTGAAGAA
TATGAGTGATGCTTTATCTAAAATGTTGAACGATTTTGTTTTGGTTTACC
AAATTCAAGATGAAGGCAAGGCTTTCAAGAAATCTTTGGGAGAGACTGCT
CAAATCGATGTGTTTGAGAAAAGTGATCACGTTGGTGGCCGCCTACACAT
TGTGACCATCGATGGACAATCCATCGAATCTGGGGGTACCATCATTCACT
CAAGCAATAAATACATGGTCGATTTTGTCAAGGATTTAGATGGTGATTAA
TTGTTCATTTTTGATTGTATTTTTGTTGTCAATGGTAACGGTCCATGGCA
TCAACGGTGAAGATATTTCGGATAACTTGGTCAGTCAGAGTGTAAAGGAT
CTGAGAATTGCTGTCATTGGCAGTGGCATTGGTGGAGCGTCGGCAACAAA
TTTTCTGAGGACGGTACCGGACTTGTTGAAAGCCCTTGGTGGTGATTACT
TTGTTGAATGCACTGATAAAACAAGTCGTCAAATTATGAAAGAAAAGGGA
GTTGGAGACGAATTGATTAACGAGTTATTAACGGCTGTTTCCAGAAATAA
TTACGGCCAATCAACTGANAGTTGGAGACGAATTGATCAACGAGTTATTA
ACGGCTGTTTCCAGAAATAAGCCTTGGTACCAACGTTGCAATGTCAAACG
AACGTCTTGGTATTTACAATGGCAAAGAATTTGTTTTCGTTGAGACCTCT
ACAAGCTGGTGGAACAGCATCAAGATGATATGGCGATATGGATTTTTCAG
TCTGAAGAATATGAGTGATGCTTTATCTAAAATGTTGAACGATTTTGTTT
TGGTTTACCAAATTCAAGATGAAGGCAAGGCTTTCAAGAAATCTTTGGGA
GAGACTGCTCAAATCGATGTGTTTGAGAAAAGTGATCACGTTGGTGGCCG
CCTACACATTGTGACCATCGATGGACAATCCATCGAATCTGGGGGTACCA
TCATTCACTCAAGCAATAAATACATGGTCGATTTTGTCAAGGATTTAGAT
GGTGATTAATTGTTCATTTTTGATTGTATTTTTGTTGTCAATGGTAACGG
TCCATGGCATCAACGGTGAAGATATTTCGGATAACTTGGTCAGTCAGAGT
GTAAAGGATCTGAGAATTGCTGTCATTGGCAGTGGCATTGGTGGAGCGTC
GGCAACAAATTTTCTGAGGACGGTACCGGACTTGTTGAAAGCCCTTGGTG
GTGATTACTTTGTTGAATGCACTGATAAAACAAGTCGTCAAATTATGAAA
GAAAAGGGAGTTGGAGACGAATTGATTAACGAGTTATTAACGGCTGTTTC
CAGAAATAATTACGGCCAATCAACTGANAGTTGGAGACGAATTGATCAAC
GAGTTATTAACGGCTGTTTCCAGAAATAAGCCTTGGTACCAACGTTGCAA
TGTCAAACGAACGTCTTGGTATTTACAATGGCAAAGAATTTGTTTTCGTT
GAGACCTCTACAAGCTGGTGGAACAGCATCAAGATGATATGGCGATATGG
ATTTTTCAGTCTGAAGAATATGAGTGATGCTTTATCTAAAATGTTGAACG
ATTTTGTTTTGGTTTACCAAATTCAAGATGAAGGCAAGGCTTTCAAGAAA
TCTTTGGGAGAGACTGCTCAAATCGATGTGTTTGAGAAAAGTGATCACGT
TGGTGGCCGCCTACACATTGTGACCATCGATGGACAATCCATCGAATCTG
GGGGTACCATCATTCACTCAAGCAATAAATACATGGTCGATTTTGTCAAG
GATTTAGATGGTGATTAATTGTTCATTTTTGATTGTATTTTTGTTGTCAA
TGGTAACGGTCCATGGCATCAACGGTGAAGATATTTCGGATAACTTGGTC
AGTCAGAGTGTAAAGGATCTGAGAATTGCTGTCATTGGCAGTGGCATTGG
TGGAGCGTCGGCAACAAATTTTCTGAGGACGGTACCGGACTTGTTGAAAG
CCCTTGGTGGTGATTACTTTGTTGAATGCACTGATAAAACAAGTCGTCAA
ATTATGAAAGAAAAGGGAGTTGGAGACGAATTGATTAACGAGTTATTAAC
GGCTGTTTCCAGAAATAATTACGGCCAATCAACTGANAGTTGGAGACGAA
TTGATCAACGAGTTATTAACGGCTGTTTCCAGAAATAAGCCTTGGTACCA
ACGTTGCAATGTCAAACGAACGTCTTGGTATTTACAATGGCAAAGAATTT
GTTTTCGTTGAGACCTCTACAAGCTGGTGGAACAGCATCAAGATGATATG
GCGATATGGATTTTTCAGTCTGAAGAATATGAGTGATGCTTTATCTAAAA
TGTTGAACGATTTTGTTTTGGTTTACCAAATTCAAGATGAAGGCAAGGCT
TTCAAGAAATCTTTGGGAGAGACTGCTCAAATCGATGTGTTTGAGAAAAG
TGATCACGTTGGTGGCCGCCTACACATTGTGACCATCGATGGACAATCCA
TCGAATCTGGGGGTACCATCATTCACTCAAGCAATAAATACATGGTCGAT
TTTGTCAAGGATTTAGATGGTGATTAATTGTTCATTTTTGATTGTATTTT
TGTTGTCAATGGTAACGGTCCATGGCATCAACGGTGAAGATATTTCGGAT
AACTTGGTCAGTCAGAGTGTAAAGGATCTGAGAATTGCTGTCATTGGCAG
TGGCATTGGTGGAGCGTCGGCAACAAATTTTCTGAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011970	XLOC_011970	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00021381-protein	TCONS_00021381-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000385	supercontig	sc0000385:392147..402951 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.61394	7.42675	5.74161	5.51847	5.91115	5.41069	8.99919	10.2379	8.0401	8.78163	9.15859	6.24013	8.33441	8.81714	12.2935	16.5072	6.56795	7.39398	7.22484	7.94578	4.28587	4.32308	5.57695	5.60457	6.3482	6.92901	2.4745	1.77525	5.16232	4.26125

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR010795	Prenylcys_lyase
IPR023753	FAD/NAD-binding_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0030328	prenylcysteine catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0030328	prenylcysteine catabolic process
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0016670	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor

Blast

[Close]

BLAST of TCONS_00021381 vs. Swiss-Prot (Human)
Match: PCYOX (Prenylcysteine oxidase 1 OS=Homo sapiens GN=PCYOX1 PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 3.240e-35
Identity = 77/181 (42.54%), Postives = 116/181 (64.09%), Query Frame = 1

Query:  283 FLRKSLGETAQIDVFEKSDHVGGRLHIVTIDGQSIESGGTIIHSSNKYMVDFVKDLGLGTNVAMSNERLGIYNGKEFVFVETSTSWWNSIKMIWRYGFFSLKNMSDALSKMLNDFVLVYQIQDEGKAFKTVPDLLKALGGDYFVECTDKTSRQIMKEKGVGDELINELLTAVSRNNYGQST 825
            +LR+  G+  +ID+FE+ + VGGRL  + + GQ  E+GG++IH  N +M  FVKDLGL + V  S   LGIYNG+  VF E++    N IK++WRYGF SL+ M   +  +L+ F+ +Y+ Q    AF +V  LL ALGGD F+   ++T  + +++ G  ++ +NE++  V R NYGQST
Sbjct:   52 YLRQKFGKDVKIDLFER-EEVGGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDLGL-SAVQASGGLLGIYNGETLVFEESNWFIINVIKLVWRYGFQSLR-MHMWVEDVLDKFMRIYRYQSHDYAFSSVEKLLHALGGDDFLGMLNRTLLETLQKAGFSEKFLNEMIAPVMRVNYGQST 229

HSP 2 Score: 125.946 bits (315), Expect = 4.591e-30
Identity = 101/289 (34.95%), Postives = 144/289 (49.83%), Query Frame = 2

Query:  812 TANQLXVGDELINELLTAVSRNNYGQSTDEINGFTGYVSLAGAQGGSLWNVKGGNYQVPQRLLQKSKAEVHINTKITSIKKHIDESSG---KIAYYLEGAGNETP---YDAVIVAAPLEIPSYFITCAECKDWPKQSDMGRYQQTIANFIHKPVDYKYFGYKSAEKLP-DIIFTTEEESLNFTTIESHGNVNGDPIKPP------VYKVFSRKPLTSEMINQLFIT---GSQTPEYTSVNWLAYPHYSPPEKFLPFELDEGVFYVNAIERAASAMEMSAIGGRNAALLA 1630
            T  +    ++ +NE++  V R NYGQSTD IN F G VSL+ +  G LW V+GGN  V   LLQ SK+ +   + +   +K   + +G   K+   +   G ET    YD V+VA PL      IT     D P +     YQ  +   +   ++   F  +  +K   + + TT+   L   +I    +V       P      V+K+FS++ LT   I +LF++     + P      WLAYPHY PPEK     L + ++Y+N IE AASAMEMSAI   NAALLA
Sbjct:  202 TLQKAGFSEKFLNEMIAPVMRVNYGQSTD-INAFVGAVSLSCSDSG-LWAVEGGNKLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIGTETRSDFYDIVLVATPLNRKMSNITFLNF-DPPIEEFHQYYQHIVTTLVKGELNTSIFSSRPIDKFGLNTVLTTDNSDLFINSIGIVPSVREKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKKP------WLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIAAHNAALLA 481

The following BLAST results are available for this feature:

BLAST of TCONS_00021381 vs. Swiss-Prot (Human)

BLAST of TCONS_00021381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PCYOX	3.240e-35	42.54	Prenylcysteine oxidase 1 OS=Homo sapiens GN=PCYOX1...	[more]

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TCONS_00021381 (transcript) - C. hemisphaerica