TCONS_00021380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021380
Unique NameTCONS_00021380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021380 ID=TCONS_00021380|Name=TCONS_00021380|organism=Clytia hemisphaerica|type=transcript|length=768bp
TAAGgttataaaacaaaattaataaaattattCACGGATTACtaaaaatt
ataacaaaatgTCAACAAGTGATGAACTTCCAACGGAATCAAATGAATCG
TCAAATATTTTGCCGAACGACGTCCATACTGAAGACAATAATTTGCAGAA
TGAAACAAGTGAGCTTGAAGGACTTGCAAAGAATGAAGAAACAGAAAGCG
GTGGTATTTTACcgaatgaaaaattagaaaCAGAGAATTTGCAGAATGAA
ACAAGTGAGCTTGAAGGACTTGCAAAGAATGAAGAAACAGAAAGTGTTGA
TATTTTAccgaatgaaaaattattagAAACAAAGAATTCGCAAACCGAAA
CTACTAATAAACGAAAGAAAGTTGCAATTATTGGAAGTGGCATCGGTGGT
GCATCAACAGCTCATTTCCTGAGGAAACATTACGGAGATTCTCTACATAT
TGACGTTTTCGAGAAAACCGATCGAATGGGTGGACGTCTTTTGAGCGCAC
ATCTGAATGGTGAATCTTTTGAAACAGGTGGTACAATCATTCACTCCAGT
AATAAATATATGGCTGAGTTCACAAAAGAGATGGAACGGTGCCTGACTTA
CTGACTTCGATAGGTGGGGAATATTTAGTGGACTGTACACAAAAAACATG
CCGTGAAGTCTTGAAAGAGAAAGGAGTCGGTGACAAACTGATTGATGAAT
TTGTCAATAGCATTTTAAGAATGATTTATGATCAAACTGCGGACGAGCTG
AATGGATTGACCGGTAAT
Run BLAST on NCBI

protein sequence of TCONS_00021380-protein

>TCONS_00021380-protein ID=TCONS_00021380-protein|Name=TCONS_00021380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MSTSDELPTESNESSNILPNDVHTEDNNLQNETSELEGLAKNEETESGGI
LPNEKLETENLQNETSELEGLAKNEETESVDILPNEKLLETKNSQTETTN
KRKKVAIIGSGIGGASTAHFLRKHYGDSLHIDVFEKTDRMGGRLLSAHLN
GESFETGGTIIHSSNKYMAEFTKEMERCLTY
Run BLAST on NCBI

transcript from alignment at sc0000385:388933..392057-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021380 ID=TCONS_00021380|Name=TCONS_00021380|organism=Clytia hemisphaerica|type=transcript|length=3125bp|location=Sequence derived from alignment at sc0000385:388933..392057- (Clytia hemisphaerica)
TAAGGTTATAAAACAAAATTAATAAAATTATTCACGGATTACTAAAAATT
ATAACAAAATGTCAACAAGTGATGAACTTCCAACGGAATCAAATGAATCG
TCAAATATTTTGCCGAACGACGTCCATACTGAAGACAATAATTTGCAGAA
TGAAACAAGTGAGCTTGAAGGACTTGCAAAGAATGAAGAAACAGAAAGCG
GTGGTATTTTACCGAATGAAAAATTAGAAACAGAGAATTTGCAGAATGAA
ACAAGTGAGCTTGAAGGACTTGCAAAGAATGAAGAAACAGAAAGTGTTGA
TATTTTACCGAATGAAAAATTATTAGAAACAAAGAATTCGCAAACCGAAA
CTACTAATAAACGAAAGAAAGTTGCAATTATTGGAAGTGGCATCGGTGGT
GCATCAACAGCTCATTTCCTGAGGTACATGCTTTTTTCTTAAGAGCATCC
ATAAGTTTTTATGTCTTCGGGGTGTCCTTAAATCTTTGAGTTAGACTTTT
TTTGGGGGAAATCAAATTATAATGGCCGCATTTTTTCGCCGTTTCAACAT
ATTAAATTTTTGAGTTTTAAGCTTAAAAATGTTCTTATAATGTTCTTTAT
TTTACCATTTTGTGATTATTTTTGTGCAATTTTCAAGTTCTACTCCCCCC
TCGGAAAATTACTGGGGTTTAGCAGAGTACACGCGCTTATTTTTATAAGA
ATAGTGTTTATCGATTTCATCATAGATATTCTTAACTTTTTGGGGACTAG
AACTTTTAGGCTAGAATCCAAACCCAGCCTTAATCTAGCATGCAATACAT
AACTAACTAACAGACTTGACTGTTTCTAAACATACTCTTAATATACACTC
CTTTCTCACAGACCCGGTAGGATTCTTTCAGTCAGTAAAGGGATAAAAAT
ATTGGACTGAATGAAACTCGATGGGAATTGATATTCCTACGTTTTTTATG
GCTGGGAATTTCAATTATTTTATTTTCAAGTCATAAAATTTGGTGGGGAT
GGAAAAAAAGCATAATATTTTGCAGTGAAGATTGGTTTATTTGATTATCA
TCAGTGGTGGACAAAAATTGGAGGATAATTTTCCACCGGGGACGATATGA
AGGGGGTGTTAATATGCTTGATTACACGCTTTTTTTATGAAAATATATCT
TTCCATAGGAAACATTACGGAGATTCTCTACATATTGACGTTTTCGAGAA
AACCGATCGAATGGGTGGACGTCTTTTGAGCGCACATCTGAATGGTGAAT
CTTTTGAAACAGGTGGTACAATCATTCACTCCAGTAATAAATATATGGCT
GAGTTCACAAAAGAGATGGGTAAGTAGCTACAGTGTAGTTCATAACGTCA
AAACAACCTGAACAAAATGTCAATAGGATCCTTTAAAACGTACACGATTT
TTTATAAGAATCAGATAATTTTTACTCAGGCTGAGAGCTGTTCCTAATTT
TTTGAAGTTTTAAGGCTTTGTTGAAATTAGTACTTCGTTAAAAATTTCAA
TTGATAGATTGTTCTTAATTTGTTCTTAGGTTTTAGCCAATTTTTACCCT
CGTGTTCTCATAAAATTGCTCCTTTAAAAAAGATGTAAACATTAAAACAA
TGTTTTGCGCCAGTTGGATTACTCTTTTTGTAGTATTAGTTTTGTTCTTT
TGCTTTTTATCTATTTAGATAGGTTTCGCTGTGAGTTTTCTAGGCCTATC
TCCGGAAAATTCCGAATCCTAGGCTGGCGAACTCTCAAAGAATTCAGTAT
TTATTATAAAGGGTATAAGCCTTTATGGTTATGGTAACAAATCAAATATA
TTTTAACTGCGTATCTTAAAATTATTTACACTGACGCATACACGTTTTTT
TTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTGTGAATGCCTAAAA
ACTAAGAAACATCTGAGAAACAGGCTGAGGCTGAGAATGAGAAAATAACA
TTTTTTAATGTCAGAAGAAATGTCAGACTGACTACTTCACAGTTCACTCT
TCAATGTAAAGTTGGTTGAAGAAAGATTTATAAAAAATGTGTAAGTGCTA
CGTATTTCTAACTCATATTCTATTTCACATCATTTTAGGACTAGAAACGA
ATCAAGAGAATGGCATCGAAAAATTTGGTATTTGGAATGGCAATGAATTC
CTGTTTACTGAAACCTCAATGGACTGGTGGAACACGGTCAAAATGGTTTT
TCGATACGGTCCATTGAGCTTGAAGAGGTTGAATGATGTGACTACATCTG
GTGCGAATATATTTACTTCTATTTATGAAAAACAAGATGCAGGACAAACA
TTTAAGTAAGTTTCAACACACTTCATGTTTTCTTTTATAAGAACATCCAA
AATTTTTTAAAGCCTTAGGATGTTCTTAACTTCTTGACTTTTGAGCCTAA
AAATGTTCTTAATTTGTTCTTAAGATTACGGCGATCGAAGCCTTATGTTC
TCATATAGTTTGCTCTTATAAAAAAGTGTAACATTTTCATATAAGGAAAC
TTATTTTTATAAAACAACAAGAGGCTTAAATTTAATCAAAAACTTTGGCG
AGAACAATATTAGAATACAATCTGACACTCACGTTTCAATAATATCTAAC
TATGTCGCAATTCGAGGTCGACCCGAAGACTCCCTTTTGTTTAGCTGTCT
ACCCGAAGGTAGGGGAGGGCGCCATTCCTTTCTCTAGATTTCTCCACTTA
CCTTTGACCATTTTCTTCAATTGCTGAACATTAAGCAGAGATGCATCAAG
TACCAATTTGTAATTAATTTTTGTAATGACCCGGCTAGGGATCGAACCCA
CAACTTTGTGACGCGTTGCTAGGTGCTCTACCTTCATTTTACGGCTGCCA
AGAATAGTACAGATCTTAGCACTTTAGAGCCTTTCCGAGAAATTGTCAAC
CAACGATATTGCGAACTCGCTAACTTTATAATTGTGTTTAGAACGGTGCC
TGACTTACTGACTTCGATAGGTGGGGAATATTTAGTGGACTGTACACAAA
AAACATGCCGTGAAGTCTTGAAAGAGAAAGGAGTCGGTGACAAACTGATT
GATGAATTTGTCAATAGCATTTTAAGAATGATTTATGATCAAACTGCGGA
CGAGCTGAATGGATTGACCGGTAAT

Coding sequence (CDS) from alignment at sc0000385:388933..392057-

>TCONS_00021380 ID=TCONS_00021380|Name=TCONS_00021380|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000385:388933..392057- (Clytia hemisphaerica)
AACGGTGCCTGACTTACTGAGAAACATTACGGAGATTCTCTACATATTGA
CGTTTTCGAGAAAACCGATCGAATGGGTGGACGTCTTTTGAGCGCACATC
TGAATGGTGAATCTTTTGAAACAGGTGGTACAATCATTCACTCCAGTAAT
AAATATATGGCTGAGTTCACAAAAGAGATGGATGTCAACAAGTGATGAAC
TTCCAACGGAATCAAATGAATCGTCAAATATTTTGCCGAACGACGTCCAT
ACTGAAGACAATAATTTGCAGAATGAAACAAGTGAGCTTGAAGGACTTGC
AAAGAATGAAGAAACAGAAAGCGGTGGTATTTTACCGAATGAAAAATTAG
AAACAGAGAATTTGCAGAATGAAACAAGTGAGCTTGAAGGACTTGCAAAG
AATGAAGAAACAGAAAGTGTTGATATTTTACCGAATGAAAAATTATTAGA
AACAAAGAATTCGCAAACCGAAACTACTAATAAACGAAAGAAAGTTGCAA
TTATTGGAAGTGGCATCGGTGGTGCATCAACAGCTCATTTCCTGAGAACG
GTGCCTGACTTACTGAGAAACATTACGGAGATTCTCTACATATTGACGTT
TTCGAGAAAACCGATCGAATGGGTGGACGTCTTTTGAGCGCACATCTGAA
TGGTGAATCTTTTGAAACAGGTGGTACAATCATTCACTCCAGTAATAAAT
ATATGGCTGAGTTCACAAAAGAGATGGATGTCAACAAGTGATGAACTTCC
AACGGAATCAAATGAATCGTCAAATATTTTGCCGAACGACGTCCATACTG
AAGACAATAATTTGCAGAATGAAACAAGTGAGCTTGAAGGACTTGCAAAG
AATGAAGAAACAGAAAGCGGTGGTATTTTACCGAATGAAAAATTAGAAAC
AGAGAATTTGCAGAATGAAACAAGTGAGCTTGAAGGACTTGCAAAGAATG
AAGAAACAGAAAGTGTTGATATTTTACCGAATGAAAAATTATTAGAAACA
AAGAATTCGCAAACCGAAACTACTAATAAACGAAAGAAAGTTGCAATTAT
TGGAAGTGGCATCGGTGGTGCATCAACAGCTCATTTCCTGAGAACGGTGC
CTGACTTACTGAGAAACATTACGGAGATTCTCTACATATTGACGTTTTCG
AGAAAACCGATCGAATGGGTGGACGTCTTTTGAGCGCACATCTGAATGGT
GAATCTTTTGAAACAGGTGGTACAATCATTCACTCCAGTAATAAATATAT
GGCTGAGTTCACAAAAGAGATGGATGTCAACAAGTGATGAACTTCCAACG
GAATCAAATGAATCGTCAAATATTTTGCCGAACGACGTCCATACTGAAGA
CAATAATTTGCAGAATGAAACAAGTGAGCTTGAAGGACTTGCAAAGAATG
AAGAAACAGAAAGCGGTGGTATTTTACCGAATGAAAAATTAGAAACAGAG
AATTTGCAGAATGAAACAAGTGAGCTTGAAGGACTTGCAAAGAATGAAGA
AACAGAAAGTGTTGATATTTTACCGAATGAAAAATTATTAGAAACAAAGA
ATTCGCAAACCGAAACTACTAATAAACGAAAGAAAGTTGCAATTATTGGA
AGTGGCATCGGTGGTGCATCAACAGCTCATTTCCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011969XLOC_011969Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021380-proteinTCONS_00021380-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021380-exon-sc0000385-1575043694:391635..392057TCONS_00021380-exon-sc0000385-1575043694:391635..392057Clytia hemisphaericaexon
TCONS_00021380-exon-sc0000385-1575043694:390739..390899TCONS_00021380-exon-sc0000385-1575043694:390739..390899Clytia hemisphaericaexon
TCONS_00021380-exon-sc0000385-1575043694:388933..389116TCONS_00021380-exon-sc0000385-1575043694:388933..389116Clytia hemisphaericaexon
TCONS_00021380-exon-sc0000385-1510915933:391635..392057TCONS_00021380-exon-sc0000385-1510915933:391635..392057Clytia hemisphaericaexon
TCONS_00021380-exon-sc0000385-1510915933:390739..390899TCONS_00021380-exon-sc0000385-1510915933:390739..390899Clytia hemisphaericaexon
TCONS_00021380-exon-sc0000385-1510915933:388933..389116TCONS_00021380-exon-sc0000385-1510915933:388933..389116Clytia hemisphaericaexon
TCONS_00021380-exon-sc0000385-1491911889:391635..392057TCONS_00021380-exon-sc0000385-1491911889:391635..392057Clytia hemisphaericaexon
TCONS_00021380-exon-sc0000385-1491911889:390739..390899TCONS_00021380-exon-sc0000385-1491911889:390739..390899Clytia hemisphaericaexon
TCONS_00021380-exon-sc0000385-1491911889:388933..389116TCONS_00021380-exon-sc0000385-1491911889:388933..389116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:388933..392057 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.27802	3.0848	2.45597	1.74175	1.05403	0.652467	3.58694	5.21243	3.8503	3.56874	2.8737	4.00933	2.85905	2.37362	0.929954	1.43291	0.914773	0.757976	0.456512	1.15742	0.379484	0.359168	1.14402	1.53248	6.79168	5.33525	0.514688	0.185751	0.609811	0.788208
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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