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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021378 ID=TCONS_00021378|Name=TCONS_00021378|organism=Clytia hemisphaerica|type=transcript|length=685bp
CCAACCTATTccctgtttttttatattttatctttttgttttttgcttaC
ATTAATATGTGGCACTTCTTGGGTAGCAAGCAGCAAAATTTAAATGATTT
CTGTTGTTTTCTAACGAGTATGAAACACTGATTTTTCTTTCCACCAAAAT
AGCAATCAATCATAAATTACGAACAATTCAAGAAGTTGTTGCCGCGGAAG
GTACACCAGGGGCCTCATCTCCACCTGCCAGTGCTGCATGGAGTGTTGAC
AAGGCTTTTAACCAACCTGGTTACGCATATGGATACCATACCAAGGATAC
CTATGGCAATTTACCTGTGATGATTTGGTATCATTTCAGAAAAGGATTTA
CACCAGCTGAAATCACCTTCCGATCAAACAGCGTGGCAGCGTATGTACCA
ACTAAATACCAATTTGTCGGAACCAACGATGAACATTGCAACCAGTATTC
TGCATGGGATATCTTATGTGAAGATCTTCGAGGTTTAAAAATCACTTACC
GATACCAAACACAACGATGCGTTGTCAGCGATTTCCATACAAAGTCCTAT
TCTTGTCTTGGAATCAGAGTTTTGGGAACAACCTTGGATAACACCCCACA
TGTTGGTGTTGGCAACATGAGATTCTTCAAGAAAGTTTAAATTCTCAACT
ATGGCTGCACAGAACGTCTAAATATGGTCCATCCA Run BLAST on NCBI protein sequence of TCONS_00021378-protein >TCONS_00021378-protein ID=TCONS_00021378-protein|Name=TCONS_00021378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MIWYHFRKGFTPAEITFRSNSVAAYVPTKYQFVGTNDEHCNQYSAWDILC
EDLRGLKITYRYQTQRCVVSDFHTKSYSCLGIRVLGTTLDNTPHVGVGNM
RFFKKV Run BLAST on NCBI transcript from alignment at sc0000385:368760..371254- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021378 ID=TCONS_00021378|Name=TCONS_00021378|organism=Clytia hemisphaerica|type=transcript|length=2495bp|location=Sequence derived from alignment at sc0000385:368760..371254- (Clytia hemisphaerica)
CCAACCTATTCCCTGTTTTTTTATATTTTATCTTTTTGTTTTTTGCTTAC
ATTAATATGTGGCACTTCTTGGGTAGCAAGCAGCAAAATTTAAATGATTT
CTGTTGTTTTCTAACGAGTATGAAACACTGATTTTTCTTTCCACCAAAAT
AGCAATCAATCATAAATTACGAACAATTCAAGAAGTTGTTGCCGCGGAAG
GTACACCAGGGGCCTCATCTCCACCTGCCAGTGCTGCATGGAGTGTTGAC
AAGGCTTTTAACCAACCTGGTTACGCATATGGATACCATACCAAGGATAC
CTATGGCAATTTACCTGTGATGATTTGGTATCATTTCAGAAAAGGATTTA
CACCAGCTGAAATCACCTTCCGATCAAACAGTAAGAGAGATATATTGTGA
ACAGTTGCTAAACTAACTTTCTCCGAAAGCAGCCGGCGAGGTGACCTTTT
TTTTCGATGTGTTCTGAGAGCATATTTCAGCTAGAAATTTTAATCTGTTC
TGATTAGATCTTCGAAAATTAATCAGCTAGAAATAATGATGTGTTTTGAC
GAGACAGGGGTAAAATGTAAAATCAAGGTCATCTAACGTGTTCTTGTTGT
CTAGGTAACCCTAGAAAGCTTCAGAACACATATTTTAAGGAGACAGTGGT
ATAATCAATAGAAAATTGATGTAATGTTGTTGCATAGTAACCGTAACCCT
AGAAATTTTCAGAACGCATCCTTCGTGGAGAAACAAATATATTACACGTT
TATCTTGGCAAACTGTTTTTCTTAGATTTTAGAACACATCAAACCATAAA
GTAGTGATAAGTTTAGGGAGACAAATAGTGCGATACAGGTTTCCTAGAAA
TCAAAATACATCATTTGTATAAAAATTTAAAGGACATAACATTTGGTCTC
CTAGAAGATAAGAACACATATTTCTAAAAAATCTCTCCGCCGGCTGCTTC
TGTTTCTCTAATCTAATCTTTACCCTATTAGCCCTAGGGGGGGGGGTGTA
GAATCTACCACGCTGGAGTTCTTTTGCGTATATCTCGGAGAAAAATTTTT
TAAACGACTTGAAACTTTCTGACTTTAAACAAAATCCTATTAAGAGTATT
TCTGCAAAATTTTAGGGTTATAGCTTGTCCAGATCAAGTTTTTGACTTTA
TTGTGAAACATGACATATAACCCAGCTAAAATCGCTTAAAACTCACTATT
TTAAATTGTTGATAACTTTTAAACTATTTATTCAATCATCTTCAAATTTA
GACACGTGATAGGTATTGACAATATAAATTTGAAAAATTAGAAAACATTT
TTTGATGACGTCATCAAGTTTTGAAAATTTAACTCATCTTCAGCACAAAT
TTTAAGATAAAATCTTCATGGAAACTGCATAACTGTTAATTGCAATTATG
TTAAAGAAGAACCTTTTATCTTTCAGAATTTTTAAACAGAATCTAAATAT
CATTATTGGTTCGATTGTAATAGACATTTTTGTAAACCATATATTTTGGC
TTTATGCCGACAGGTGGAAATTTTGTGGTGACGTCATCGGTTTTTGAATG
ACGTCATCAAATTTTTTTTTGTTCCAGGAAATTTGTGTCATGATGGAGAA
CATCTCTACCAAATTTCATGACCGTAGCTCTCCTAGATCAAAAATAATCG
AGGGTGGTAGATTCTACCCCCCCCCCCTGGGGATACAAAAGTCAAAAAAG
CTTGGGGCTAATAGGGTAAAGGACCCAACATTTTTGAATAGAATTGATAA
TTTGAACTGAGGACAGCCTTTTGCACGACTTTTTTTTTGAACAGAGGCAA
CTTTATCTTGTCAAAGGATCTAATTTTTATTCATAAGGTTCCCAGTTTAA
CGAGGTACGATTATCAGCATAGCCAGGCTGAGGCTTTGACTTGATCTATT
TTTATAGAACAATAGCAACTGAAGCATATGCTCAGCTAAATGAACCCTAA
TGTTTGAGAAAAAGAAAAAGAACTACCCCTCCCCCAGAAATAGTTGGGTC
GTTTAAGATGATGCAATCAGTGCTCGATATCTGAGAAATCTTGTTCTAAA
TTTCTTTACTTCGTTCACTAATTAGCTTTAAAAAAAAATGTGTAGCTTAA
ATAAAACTTTTCTAATTCATTTTTAACCAGGCGTGGCAGCGTATGTACCA
ACTAAATACCAATTTGTCGGAACCAACGATGAACATTGCAACCAGTATTC
TGCATGGGATATCTTATGTGAAGATCTTCGAGGTTTAAAAATCACTTACC
GATACCAAACACAACGATGCGTTGTCAGCGATTTCCATACAAAGTCCTAT
TCTTGTCTTGGAATCAGAGTTTTGGGAACAACCTTGGATAACACCCCACA
TGTTGGTGTTGGCAACATGAGATTCTTCAAGAAAGTTTAAATTTTCAACT
ATGGCTGCACAGAACGTNTTGGCAACATGAGATTCTTCAAGAAAGTTTAA
ATTCTCAACTATGGCTGCACAGAACGTCTAAATATGGTCCATCCA Coding sequence (CDS) from alignment at sc0000385:368760..371254- >TCONS_00021378 ID=TCONS_00021378|Name=TCONS_00021378|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000385:368760..371254- (Clytia hemisphaerica)
ATGAGATTCTTCAAGAAAGTTTAAGCGTGGCAGCGTATGTACCAACTAAA
TACCAATTTGTCGGAACCAACGATGAACATTGCAACCAGTATTCTGCATG
GGATATCTTATGTGAAGATCTTCGAGGTTTAAAAATCACTTACCGATACC
AAACACAACGATGCGTTGTCAGCGATTTCCATACAAAGTCCTATTCTTGT
CTTGGAATCAGAGTTTTGGGAACAACCTTGGATAACACCCCACATGTTGG
TGTTGGCAACATGATTTGGTATCATTTCAGAAAAGGATTTACACCAGCTG
AAATCACCTTCCGATCAAACAATGAGATTCTTCAAGAAAGTTTAAGCGTG
GCAGCGTATGTACCAACTAAATACCAATTTGTCGGAACCAACGATGAACA
TTGCAACCAGTATTCTGCATGGGATATCTTATGTGAAGATCTTCGAGGTT
TAAAAATCACTTACCGATACCAAACACAACGATGCGTTGTCAGCGATTTC
CATACAAAGTCCTATTCTTGTCTTGGAATCAGAGTTTTGGGAACAACCTT
GGATAACACCCCACATGTTGGTGTTGGCAACATGATTTGGTATCATTTCA
GAAAAGGATTTACACCAGCTGAAATCACCTTCCGATCAAACAATGAGATT
CTTCAAGAAAGTTTAAGCGTGGCAGCGTATGTACCAACTAAATACCAATT
TGTCGGAACCAACGATGAACATTGCAACCAGTATTCTGCATGGGATATCT
TATGTGAAGATCTTCGAGGTTTAAAAATCACTTACCGATACCAAACACAA
CGATGCGTTGTCAGCGATTTCCATACAAAGTCCTATTCTTGTCTTGGAAT
CAGAGTTTTGGGAACAACCTTGGATAACACCCCACATGTTGGTGTTGGCA
ACATGATTTGGTATCATTTCAGAAAAGGATTTACACCAGCTGAAATCACC
TTCCGATCAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021378-exon-sc0000385-1575043694:370875..371254 | TCONS_00021378-exon-sc0000385-1575043694:370875..371254 | Clytia hemisphaerica | exon |
| TCONS_00021378-exon-sc0000385-1575043694:368889..369124 | TCONS_00021378-exon-sc0000385-1575043694:368889..369124 | Clytia hemisphaerica | exon |
| TCONS_00021378-exon-sc0000385-1575043694:368760..368828 | TCONS_00021378-exon-sc0000385-1575043694:368760..368828 | Clytia hemisphaerica | exon |
| TCONS_00021378-exon-sc0000385-1510915933:370875..371254 | TCONS_00021378-exon-sc0000385-1510915933:370875..371254 | Clytia hemisphaerica | exon |
| TCONS_00021378-exon-sc0000385-1510915933:368889..369124 | TCONS_00021378-exon-sc0000385-1510915933:368889..369124 | Clytia hemisphaerica | exon |
| TCONS_00021378-exon-sc0000385-1510915933:368760..368828 | TCONS_00021378-exon-sc0000385-1510915933:368760..368828 | Clytia hemisphaerica | exon |
| TCONS_00021378-exon-sc0000385-1491911889:370875..371254 | TCONS_00021378-exon-sc0000385-1491911889:370875..371254 | Clytia hemisphaerica | exon |
| TCONS_00021378-exon-sc0000385-1491911889:368889..369124 | TCONS_00021378-exon-sc0000385-1491911889:368889..369124 | Clytia hemisphaerica | exon |
| TCONS_00021378-exon-sc0000385-1491911889:368760..368828 | TCONS_00021378-exon-sc0000385-1491911889:368760..368828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:368760..371254 - |
Blast
The following BLAST results are available for this feature:
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