TCONS_00021347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021347
Unique NameTCONS_00021347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021347 ID=TCONS_00021347|Name=TCONS_00021347|organism=Clytia hemisphaerica|type=transcript|length=860bp
TTGGATATCCAACGCAACAGAAGTATTCATGTTCACCGCAAATATTTTAT
AAGTATGGTACATGGTTGACTGGTGCTGACCGTGGCTTTGACAGCTTATT
TCTCAAaggtatacttcaataatGCTTCACGCGGACAAATTTTTGGTATA
CCAGAGAACAATCACGGTGTGGAGCCTGATGTCCTTATTGACCGAGAGAC
GAAACCATCCCCTGGTTACCTCATTAAAACCATTCCGCGAATGTCAACCG
AATACAAAGTTTCAACGAAATTCATCATCCATAGCTTACCGGTCAAAACT
ACGGCTTGTTTATTCCGCTTCAAGGGTGATCCCTTCGAAAATGGCTACGC
TGCGCGTAACCCGAAAATATTCGTTACACCACAGCCTGCTGTGACAGTCA
CATCAGCAGTAAATGGAGCGAATTAagcttgaaaatcgaattagggGAAC
TGGCTCTTGGACATTATCACGCAGTCGTTATCGAGCAGCGGTATGTCAGG
AACGGTCTATATAGATACAGAATTCTCTTGAATGGAGTTGAAAAGTATTC
AGTGATAAACAAGGACGCCAGACAGTTCTATAATGTCCAGTGTTTTGCTT
CAATACAAAGTGAAATGATTGCACCTGCCAATGCAACAATCAAGTATTCA
AGTTTGACTAATTTCTTGTAGATatttaaaagtttcgaaaatgtGCCAAA
AACTGACAGTTTTTTCACTCCCAATTTAGCTGTTCTTAATTTACGAACCA
GGGGCTGTGTACTCCATGTTGAGTCATCGTTGTCATGGGTTGGCCCCGCC
CTTACACAAGTTGATCAAACGAAAGAGGGACGAGTTTTAGTACTTGGACA
CTGAAGTGCA
Run BLAST on NCBI

transcript from alignment at sc0000385:785..2126-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021347 ID=TCONS_00021347|Name=TCONS_00021347|organism=Clytia hemisphaerica|type=transcript|length=1342bp|location=Sequence derived from alignment at sc0000385:785..2126- (Clytia hemisphaerica)
TTGGATATCCAACGCAACAGAAGTATTCATGTTCACCGCAAATATTTTAT
AAGTATGGTACATGGTTGACTGGTGCTGACCGTGGCTTTGACAGCTTATT
TCTCAAAGGTATACTTCAATAATGTAAGATTTCAAAACAACACTCCCTAT
GATTTTGAATTTATCATGGCATTCATTTCTCGTTTTTTGGCTGGAACTTT
CCCCCACAATTTCCATTTAGCCGCTCAAAATTTTTACAATTTTGAACCGA
CCAGCCACAGCTTTGTTAATATCATAAGCAGTTCTACTTCAACTCATTGA
GAGATTGTAATTTATTTTTCAGGCTTCACGCGGACAAATTTTTGGTATAC
CAGAGAACAATCACGGTGTGGAGCCTGATGTCCTTATTGACCGAGGTATC
TATATTTTGGTCCCTTTGTCCCTTTGGTCGGACATTCAAATTTGTGTTTA
AAAAACCAAATGTAACGTGTTTTCTAACAGGATAGTCAAAAAGAAAATAC
AGCGGAGTGGTCTGCTATAATGCACATTTCAGCTTCTTATTCCCGCTAGA
ATTTGACTTTTTTTGTCACAAAATAAACTTGTCAGCTGTTTCGTGAACCT
TAATATTGTATAAGATACCACTTGCCTACATTTTGAACAACACCTTCTTC
ACAAAAAATTTGCCATTTATTTTTTAAGAGACGAAACCATCCCCTGGTTA
CCTCATTAAAACCATTCCGCGAATGTCAACCGAATACAAAGTTTCAACGA
AATTCATCATCCATAGCTTACCGGTCAAAACTACGGCTTGTTTATTCCGC
TTCAAGGGTGATCCCTTCGAAAATGGCTACGCTGCGCGTAACCCGAAAAT
ATTCGTTACACCACAGCCTGCTGTGACAGTCACATCAGCAGTAAATGGAG
CGAATTAAGCTTGAAAATCGAATTAGGGGAACTGGCTCTTGGACATTATC
ACGCAGTCGTTATCGAGCAGCGGTATGTCAGGAACGGTCTATATAGATAC
AGAATTCTCTTGAATGGAGTTGAAAAGTATTCAGTGATAAACAAGGACGC
CAGACAGTTCTATAATGTCCAGTGTTTTGCTTCAATACAAAGTGAAATGA
TTGCACCTGCCAATGCAACAATCAAGTATTCAAGTTTGACTAATTTCTTG
TAGATATTTAAAAGTTTCGAAAATGTGCCAAAAACTGACAGTTTTTTCAC
TCCCAATTTAGCTGTTCTTAATTTACGAACCAGGGGCTGTGTACTCCATG
TTGAGTCATCGTTGTCATGGGTTGGCCCCGCCCTTACACAAGTTGATCAA
ACGAAAGAGGGACGAGTTTTAGTACTTGGACACTGAAGTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011958XLOC_011958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021347-exon-sc0000385-1575043694:2004..2126TCONS_00021347-exon-sc0000385-1575043694:2004..2126Clytia hemisphaericaexon
TCONS_00021347-exon-sc0000385-1575043694:1732..1804TCONS_00021347-exon-sc0000385-1575043694:1732..1804Clytia hemisphaericaexon
TCONS_00021347-exon-sc0000385-1575043694:785..1448TCONS_00021347-exon-sc0000385-1575043694:785..1448Clytia hemisphaericaexon
TCONS_00021347-exon-sc0000385-1510915933:2004..2126TCONS_00021347-exon-sc0000385-1510915933:2004..2126Clytia hemisphaericaexon
TCONS_00021347-exon-sc0000385-1510915933:1732..1804TCONS_00021347-exon-sc0000385-1510915933:1732..1804Clytia hemisphaericaexon
TCONS_00021347-exon-sc0000385-1510915933:785..1448TCONS_00021347-exon-sc0000385-1510915933:785..1448Clytia hemisphaericaexon
TCONS_00021347-exon-sc0000385-1491911889:2004..2126TCONS_00021347-exon-sc0000385-1491911889:2004..2126Clytia hemisphaericaexon
TCONS_00021347-exon-sc0000385-1491911889:1732..1804TCONS_00021347-exon-sc0000385-1491911889:1732..1804Clytia hemisphaericaexon
TCONS_00021347-exon-sc0000385-1491911889:785..1448TCONS_00021347-exon-sc0000385-1491911889:785..1448Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000385supercontigsc0000385:785..2126 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.926454	0	0	0.905525	0	0	0	0.787127	0	0	0.71777	0	0.3262	0.451683	0.0618907	0	0.163644	0	0.115864	0.242486	0	0	0	0	0	0	0	0	0.483902	0.554647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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