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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021327 ID=TCONS_00021327|Name=TCONS_00021327|organism=Clytia hemisphaerica|type=transcript|length=1980bp
tcggaattagatgagggatcagggaaacaaatgaaaaaaactgcATCTAC
AGTAACtatctcttttcttttcaaagatATTGATGTTTTTCGACGCAAAT
TTGCAATTCTACAGTAATGAGTGAGtttgttcatcttttcaatctcGGTt
cttttagtaaacccagggtaagattaggctacaatcataaagttgaagtt
ggtttgatattctacgttttacatttgatattcgtttgatattctcaaat
ttgcgtTTTGAAGTTCCTGTGATTaattttggaattggaaactattggaa
gccaatagattTTGctctcaagggtgtctgtgccaaatttcactGCTCTT
TGTTGCATTATTGTTTAATGTTTACTTTTGTAGAAAGGTCGGACTATGCT
CTTTGAAATTATTATCTAGAAAATCTTATTTTACTTGAGGTTTAATTTTG
TGTGGGGATTTCAGTAATTTTGATAGTTGAATTAAACCTAAGAATAAAAA
CTGAAGATATTTTTTATGTCTTCTGTAAACTATGCTTGTGGTCAGGATAG
TGTTTTCTCAAATCATTTTACAGCCACCCTGTGCGACCATGAAAAAGGAA
AAGCTGTATGGTTCGATGGTTGGATGATAACACTGTGAAGCGCTACAACC
AAAAAGAAGTGGCTGAAAAATGAAAGGCTTTCAAAAGTCAGTCTTTTATG
CAATCTACATCAAGAAATCCTCTATTGgagaaaataaaagttttgactAT
CCTCAGAAACTTGATGAAGAAAAGATTATCCTACAGGAGAAAGTCATTGT
GGCATTCGAATAATATCAAATGTTACACCAAGAAGCTCTTTGTTATCATG
CTCCGGTGAAAATCTCATTACAGACAATATCATTCTGACCTTTGTGAAAG
CTGTCGCAATCAATCATCCCTTGGTTAAGTTTGTTTCATCAGATGTCATC
ACTATTGCAAGAAATTGCTACCAAAATGTCAAGTTTAACAGGTACTTCAA
AGGGAAGGTAATTTCCTTGTGTAACCTGGTAATCATTATCCACCATACAC
CTCCTGGACATTGGTCTATTATTGGAATTTATCCAaaccaaaaaatgatt
ttttacttGAACTCAATTACCACTAAATCTGAGGAACCGTTAcaatatat
tattattatattattaagACGGTGTACGAGACacaaaattaacatttttt
atttgctgAGTGGCAGCTCTATCAATCTGTCGAGgcccaaaataaaaaaa
atacagtCAATTGCAGAGTGCTTATGTATTAATGCATACAATTTAATTGA
GAGGATAACCTTTTCAGGTTTGGAGGATGACCCAGCGTCTAAATGCAGAA
ATTCATTTGCCTGAACGCACCAATTTTAAGATAAAATTAATTGATCTTCC
TGAACTGTTTCAATCACCTACGCATCGACCGACACCTTAAAACATGTAGA
TCACCGAacatttttgacaaaatctttgaGATTGCAGAGGCTGTGATATC
TGACGATTCATACAACAAGTAAAGTAGCTCCTCAAATAAAGAACAATCCA
AGGAAGAAGTCGATCTACCATACAAGCTAGATCAATACCTACTATTGGGA
GCTTACAAGGCACAATTAGAAGAGGAAAATGGTGAGACACCGTTGACTCC
AAAAGGAAACGCAAACAGTGCCAATAGGGTATATATCTCAATGAAACTAC
TCTTGACGCAGCATGGGAGGGTATCACAAGCTACTGCGAAAATTCTTTGG
CAATACCTTCCAGCCCTGTGTCAATACACTTGATCGACGATTTTTGTAGA
TGAATCAATGGACATCTCCAGAGCAGAACAGATTATTGccacaataaaaa
aaaaaatagcctGTAGTGATCTTTTAAAATACACCCTAAACTTTGACTTT
GTTAAACTGATTTAGTAATGaaatctctttttttctttcatattcgaagt
acactcattttgtttttataggCATACTGG Run BLAST on NCBI transcript from alignment at sc0000385:75206..78345+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021327 ID=TCONS_00021327|Name=TCONS_00021327|organism=Clytia hemisphaerica|type=transcript|length=3140bp|location=Sequence derived from alignment at sc0000385:75206..78345+ (Clytia hemisphaerica)
tcggaattagatgagggatcagggaaacaaatgaaaaaaactgcATCTAC
AGTAACtatctcttttcttttcaaagatATTGATGTTTTTCGACGCAAAT
TTGCAATTCTACAGTAATGAGTGAGtttgttcatcttttcaatctcGGTt
cttttagtaaacccagggtaagattaggctacaatcataaagttgaagtt
ggtttgatattctacgttttacatttgatattcgtttgatattctcaaat
ttgcgtTTTGAAGTTCCTGTGATTaattttggaattggaaactattggaa
gccaatagattTTGctctcaagggtgtctgtgccaaatttcactGCTCTT
TGTTGCATTATTGTTTAATGTTTACTTTTGTAGAAAGGTCGGACTATGCT
CTTTGAAATTATTATCTAGAAAATCTTATTTTACTTGAGGTTTAATTTTG
TGTGGGGATTTCAGTAATTTTGATAGTTGAATTAAACCTAAGAATAAAAA
CTGAAGATATTTTTTATGTCTTCTGTAAACTATGCTTGTGGTCAGGATAG
TGTTTTCTCAAATCATTTTACAGCCACCCTGTGCGACCATGAAAAAGGAA
AAGCTGTATGGTTCGATGGTTGGATGATAACACTGTGAAGCGCTACAACC
AAAAAGAAGTGGCTGAAAAATGAAAGGCTTTCAAAAGTCAGTCTTTTATG
CAATCTACATCAAGAAATCCTCTATTGgagaaaataaaagttttgactAT
CCTCAGAAACTTGATGAAGAAAAGATTATCCTACAGGAGAAAGTCATTGT
GGCATTCGAATAATATCAAATGTTACACCAAGAAGCTCTTTGTTATCATG
CTCCGGTGAAAATCTCATTACAGACAATATCATTCTGACCTTTGTGAAAG
CTGTCGCAATCAATCATCCCTTGGTTAAGTTTGTTTCATCAGATGTCATC
ACTATTGCAAGAAATTGCTACCAAAATGTCAAGTTTAACAGGTACTTCAA
AGGGAAGGTAATTTCCTTGTGTAACCTGGTAATCATTATCCACCATACAC
CTCCTGGACATTGGTCTATTATTGGAATTTATCCAaaccaaaaaatgatt
ttttacttGAACTCAATTACCACTAAATCTGAGGAACCGTTAcaatatat
tattattatattattaagACGGTGTACGAGACacaaaattaacatttttt
atttgctgAGTGGCAGCTCTATCAATCTGTCGAGgcccaaaataaaaaaa
atacagtCAATTGCAGAGTGCTTATGTATTAATGCATACAATTTAATTGA
GAGGATAACCTTTTCAGGTTTGGAGGATGACCCAGCGTCTAAATGCAGAA
ATTCATTTGCCTGAACGCACCAATTTTAAGATAAAATTAATTGATCTTCC
TGAACTGTTTCAATCACCTACGCATCGACCGACACCTTAAAACATGTAGA
TCACCGAacatttttgacaaaatctttgaGATTGCAGAGGCTGTGATATC
TGACGATTCATACAACAAGTAAAGTAGCTCCTCAAATAAAGAACAATCCA
AGGAAGAAGTCGATCTACCATACAAGCTAGATCAATACCTACTATTGGGA
GCTTACAAGGCACAATTAGAAGAGGTATTTCAGACCCCATTGAATGTTAA
TAAGTATGATATATCAACTCAAGATCTCAAATACAGGAGGCATTCTCGCA
AGTTTATTTCAATTATAAAATGTCTTTCAAAATGGGATGTGAAATTGGGC
TCATACTAATGAGAAAAATGAACAGCTTTGGGATACCTCTAAGACATTCT
ACAACAGACTTCTATTTGGAGAATTTTCCCATCATCCCTTGCATTTTTAA
TAAAGAcacaaagaaaatttatttattggaAGCAGAACAATTGGTCGCCC
TATCATGTCTTGCTTTTGTCACAGGCCATCACACACCATCGTTCATCTTG
AACCCCCAGTAGGACTGGTAAGAAATCAAGAATAATTACAAAGAATGAAT
ATTAACAGATTTTTAAACCCGTATCTTCAAAGTGTACAACCCTTTAGGAC
AATCAGTGGAGTGCCATCAAACATAATAACAATATAATATGGTTCTAGAT
TAACTTTTACCATCTATTTGACTCGCTAGTCTGTTACCAGTTTTCCACAG
CTATCAGTTTTTTCTAGTGATTTGTTATttcattttgtatcattgtagGA
AAATGGTGAGACACCGTTGACTCCAAAAGGAAACGCAAACAGTGCCAATA
GGGTATATATCTCAATGAAAGTAAGTTCAATTCTAAAATTTTGCTGTTCC
atctttcttttttccccaaGCCTTTCAATGGTAAATCACTTTTAATCACT
TTTATTGTTGAGTCATGTACATCCCCAGAATACATGGCAGCCATATCAAG
AGGCTCTTTAAAGCAAAGTTTACAGTTTTCTTTTGTGTATTTTAGTCGTT
AACATATTTAAATCCTGTGGGGGTACTAGGTTTCTAAGATGATGGGTATG
TCTGAGCCAAACaccgaaaatcgacccttacagagactgaATGTCCAGGT
TtcagaatttatgacccttcgAGGGAgtcgtttttttatttttgtaattt
tggaacCTTACAGAGACTcttgtttttgctttttaatgatttttttggcc
ctttgagggactttcgagggtgtgaaaaagacCTTTATGATTCGCACGTA
CCCTGCACCCTTCTAGCCCCCAACCcgaatttaaatattgaatCTCtagc
atttcaaaattttttctttagattagGTTAGAACACATAATGTGACAGTT
TGTTTTTTCACAAAAGTGTAAACGTATAATctattttcctcatttttcct
CTCTAGCTACTCTTGACGCAGCATGGGAGGGTATCACAAGCTACTGCGAA
AATTCTTTGGCAATACCTTCCAGCCCTGTGTCAATACACTTGATCGACGA
TTTTTGTAGATGAATCAATGGACATCTCCAGAGCAGAACAGATTATTGcc
acaataaaaaaaaaaatagcctGTAGTGATCTTTTAAAATACACCCTAAA
CTTTGACTTTGTTAAACTGATTTAGTAATGaaatctctttttttctttca
tattcgaagtacactcattttgtttttataggCATACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021327-exon-sc0000385-1491911889:75206..76829 | TCONS_00021327-exon-sc0000385-1491911889:75206..76829 | Clytia hemisphaerica | exon |
| TCONS_00021327-exon-sc0000385-1510915933:75206..76829 | TCONS_00021327-exon-sc0000385-1510915933:75206..76829 | Clytia hemisphaerica | exon |
| TCONS_00021327-exon-sc0000385-1575043694:75206..76829 | TCONS_00021327-exon-sc0000385-1575043694:75206..76829 | Clytia hemisphaerica | exon |
| TCONS_00021327-exon-sc0000385-1491911889:77404..77475 | TCONS_00021327-exon-sc0000385-1491911889:77404..77475 | Clytia hemisphaerica | exon |
| TCONS_00021327-exon-sc0000385-1510915933:77404..77475 | TCONS_00021327-exon-sc0000385-1510915933:77404..77475 | Clytia hemisphaerica | exon |
| TCONS_00021327-exon-sc0000385-1575043694:77404..77475 | TCONS_00021327-exon-sc0000385-1575043694:77404..77475 | Clytia hemisphaerica | exon |
| TCONS_00021327-exon-sc0000385-1491911889:78062..78345 | TCONS_00021327-exon-sc0000385-1491911889:78062..78345 | Clytia hemisphaerica | exon |
| TCONS_00021327-exon-sc0000385-1510915933:78062..78345 | TCONS_00021327-exon-sc0000385-1510915933:78062..78345 | Clytia hemisphaerica | exon |
| TCONS_00021327-exon-sc0000385-1575043694:78062..78345 | TCONS_00021327-exon-sc0000385-1575043694:78062..78345 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000385 | supercontig | sc0000385:75206..78345 + |
Blast
The following BLAST results are available for this feature:
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