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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021324 ID=TCONS_00021324|Name=TCONS_00021324|organism=Clytia hemisphaerica|type=transcript|length=11785bp protein sequence of TCONS_00021324-protein >TCONS_00021324-protein ID=TCONS_00021324-protein|Name=TCONS_00021324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=3004bp MSAPRVIINQYFVLKQKSRKLIPQSQRKSKXFGSKPEKQKIDPSKPEKIKRun BLAST on NCBI transcript from alignment at sc0000385:16064..42138+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021324 ID=TCONS_00021324|Name=TCONS_00021324|organism=Clytia hemisphaerica|type=transcript|length=26075bp|location=Sequence derived from alignment at sc0000385:16064..42138+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000385:16064..42138+ >TCONS_00021324 ID=TCONS_00021324|Name=TCONS_00021324|organism=Clytia hemisphaerica|type=CDS|length=63105bp|location=Sequence derived from alignment at sc0000385:16064..42138+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021324 vs. Swiss-Prot (Human)
Match: ANR12 (Ankyrin repeat domain-containing protein 12 OS=Homo sapiens GN=ANKRD12 PE=1 SV=3) HSP 1 Score: 155.606 bits (392), Expect = 3.555e-37 Identity = 84/177 (47.46%), Postives = 108/177 (61.02%), Query Frame = 3
Query: 105 PIELL*TAMSNFTMPLTERQQLAYLMAMTKDDSSED--INESKRIKKARHSASFSN------INKPVNKSGETQLHLCAMKGEVEGTKSLIKQGADVNCKDHADWTPLHEACNHGHYKVAKALLKAGARVNAIGYDGDTPLHDASSQGHLKICLLLLKHGADRNLKNKAKEFPIDVA 611
P+ +L F PL+ER+Q+A LM MT D+S D N + A+ S+ +NK N+ GET LH+ A++G+V+ K LI GA+VN KD A WTPLHEACN G+Y VAK L+ AGA VN G D DTPLHD++S GH I LLL+HG + NK E P+DVA
Sbjct: 122 PVSIL------FGYPLSERKQMALLMQMTARDNSPDSTPNHPSQTTPAQKKTPSSSSRQKDKVNK-RNERGETPLHMAAIRGDVKQVKELISLGANVNVKDFAGWTPLHEACNVGYYDVAKILIAAGADVNTQGLDDDTPLHDSASSGHRDIVKLLLRHGGNPFQANKHGERPVDVA 291 The following BLAST results are available for this feature:
BLAST of TCONS_00021324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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