TCONS_00021318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021318
Unique NameTCONS_00021318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length202

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021318 ID=TCONS_00021318|Name=TCONS_00021318|organism=Clytia hemisphaerica|type=transcript|length=202bp
CACGGTGGTAAAAAGTAGCTGTATTTTGCCCACATAGACTAAGCCTGTGA
CGTCACACAGCGAATTATGTTTAGGTTTACAGAGCCTTGTAGAATCATCA
AAATGCCTTCAAACTTGGTaagtaaattcaaaataataaaagaaaaattt
ttgtcttgaaaatttttagatttcccgatttcccgatttttaaaAACGGG
AA
Run BLAST on NCBI

transcript from alignment at sc0000382:240995..241196

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021318 ID=TCONS_00021318|Name=TCONS_00021318|organism=Clytia hemisphaerica|type=transcript|length=202bp|location=Sequence derived from alignment at sc0000382:240995..241196 (Clytia hemisphaerica)
TTCCCGTTtttaaaaatcgggaaatcgggaaatctaaaaattttcaagac
aaaaatttttcttttattattttgaatttacttACCAAGTTTGAAGGCAT
TTTGATGATTCTACAAGGCTCTGTAAACCTAAACATAATTCGCTGTGTGA
CGTCACAGGCTTAGTCTATGTGGGCAAAATACAGCTACTTTTTACCACCG
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011939XLOC_011939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021318-exon-sc0000382-1491911889:240995..241196TCONS_00021318-exon-sc0000382-1491911889:240995..241196Clytia hemisphaericaexon
TCONS_00021318-exon-sc0000382-1510915933:240995..241196TCONS_00021318-exon-sc0000382-1510915933:240995..241196Clytia hemisphaericaexon
TCONS_00021318-exon-sc0000382-1575043694:240995..241196TCONS_00021318-exon-sc0000382-1575043694:240995..241196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000382supercontigsc0000382:240995..241196 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61938	0	1.83355	1.79384	0	0	0	1.94912	6.82311	15.2127	18.0472	4.314	19.386	8.42979	29.4252	28.6174	36.3688	12.4602	43.036	37.8286	6.26284	11.4555	7.42701	11.8164	0	1.55171	13.323	11.8489	39.5425	29.3001
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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