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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021315 ID=TCONS_00021315|Name=TCONS_00021315|organism=Clytia hemisphaerica|type=transcript|length=898bp
GGAAAAAAtacaaatgaaaacaaactttacaaaaaaattatgataaagTT
CATGGATCCTCAATAATTACCCAATCCTTTCCTATAAATAATTTAGGAGA
CGCATGCAGGCTTGATATATCATCTGCAAACTTCGAATATCGTGTTAACT
CCCCAGGTTTGAGAACTTTAACACAGATAGAGTATGGTCTCACATTCTTT
GGATCACTTACAATCCATTCAAGAGCAGAtcctttaaaaaatttaaactg
tTTTATGCACGGTGGATCACACCAATTTTTCGGACAAACCTTTTCTACAA
TatgatcttttttataagagcctgGCTTAACACGGACTTGCAATACTATC
ACCATTGTTAAGTCATTGGTTGAAACCAACGGTCTTGCGTAAGCTGATGC
AAATTCAATCAAGGGTGAAACGTAAACGCCAGCACCGTAATATCCAACCT
TTGAGGCACGAAAACCTCCAGAGGAAATCGGGTAAGCATTTATATCCTCG
GTACCGTGAAAAGCGACAGGCCATTGCGATAAACCTCCAAGCCAGTCATC
GTCTTCATATTTCCCGTTCACTTTCAATGCATATCTTTTCCAACCAATCG
GTCGATAATATCTCTCTCCTCCCCTGTAAAACTCATTATTCGTATCGTCT
TCATCACAAAAATCATAATCGTAGGAGGAATCAAGTAATTCCAACCATAC
ACCATCTGagtctttcaaaaaatgaaattcctcTGCAACAATCTCCTTTA
ATTCTTCAAGGCTTATGTCATTGGTGTATGTTTTGGACGGTATCTTTCGC
GACATTTTAGTCCCCATTCTTCTTTTACTCCTTTATTCAAAGATTATGCA
AAATTAACATAAATTATCTCGAATTCCTTCTTGATCCGGGGATAATTT Run BLAST on NCBI protein sequence of TCONS_00021315-protein >TCONS_00021315-protein ID=TCONS_00021315-protein|Name=TCONS_00021315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MGTKMSRKIPSKTYTNDISLEELKEIVAEEFHFLKDSDGVWLELLDSSYD
YDFCDEDDTNNEFYRGGERYYRPIGWKRYALKVNGKYEDDDWLGGLSQWP
VAFHGTEDINAYPISSGGFRASKVGYYGAGVYVSPLIEFASAYARPLVST
NDLTMVIVLQVRVKPGSYKKDHIVEKVCPKNWCDPPCIKQFKFFKGSALE
WIVSDPKNVRPYSICVKVLKPGELTRYSKFADDISSLHASPKLFIGKDWV
IIEDP Run BLAST on NCBI transcript from alignment at sc0000382:94477..95374 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021315 ID=TCONS_00021315|Name=TCONS_00021315|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at sc0000382:94477..95374 (Clytia hemisphaerica)
AAATTATCCCCGGATCAAGAAGGAATTCGAGATAATTTATGTTAATTTTG
CATAATCTTTGAATAAAGGAGTAAAAGAAGAATGGGGACTAAAATGTCGC
GAAAGATACCGTCCAAAACATACACCAATGACATAAGCCTTGAAGAATTA
AAGGAGATTGTTGCAgaggaatttcattttttgaaagactCAGATGGTGT
ATGGTTGGAATTACTTGATTCCTCCTACGATTATGATTTTTGTGATGAAG
ACGATACGAATAATGAGTTTTACAGGGGAGGAGAGAGATATTATCGACCG
ATTGGTTGGAAAAGATATGCATTGAAAGTGAACGGGAAATATGAAGACGA
TGACTGGCTTGGAGGTTTATCGCAATGGCCTGTCGCTTTTCACGGTACCG
AGGATATAAATGCTTACCCGATTTCCTCTGGAGGTTTTCGTGCCTCAAAG
GTTGGATATTACGGTGCTGGCGTTTACGTTTCACCCTTGATTGAATTTGC
ATCAGCTTACGCAAGACCGTTGGTTTCAACCAATGACTTAACAATGGTGA
TAGTATTGCAAGTCCGTGTTAAGCcaggctcttataaaaaagatcatATT
GTAGAAAAGGTTTGTCCGAAAAATTGGTGTGATCCACCGTGCATAAAaca
gtttaaattttttaaaggaTCTGCTCTTGAATGGATTGTAAGTGATCCAA
AGAATGTGAGACCATACTCTATCTGTGTTAAAGTTCTCAAACCTGGGGAG
TTAACACGATATTCGAAGTTTGCAGATGATATATCAAGCCTGCATGCGTC
TCCTAAATTATTTATAGGAAAGGATTGGGTAATTATTGAGGATCCATGAA
ctttatcataatttttttgtaaagtttgttttcatttgtaTTTTTTCC Coding sequence (CDS) from alignment at sc0000382:94477..95374 >TCONS_00021315 ID=TCONS_00021315|Name=TCONS_00021315|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000382:94477..95374 (Clytia hemisphaerica)
ATGGGGACTAAAATGTCGCGAAAGATACCGTCCAAAACATACACCAATGA
CATAAGCCTTGAAGAATTAAAGGAGATTGTTGCAgaggaatttcattttt
tgaaagactCAGATGGTGTATGGTTGGAATTACTTGATTCCTCCTACGAT
TATGATTTTTGTGATGAAGACGATACGAATAATGAGTTTTACAGGGGAGG
AGAGAGATATTATCGACCGATTGGTTGGAAAAGATATGCATTGAAAGTGA
ACGGGAAATATGAAGACGATGACTGGCTTGGAGGTTTATCGCAATGGCCT
GTCGCTTTTCACGGTACCGAGGATATAAATGCTTACCCGATTTCCTCTGG
AGGTTTTCGTGCCTCAAAGGTTGGATATTACGGTGCTGGCGTTTACGTTT
CACCCTTGATTGAATTTGCATCAGCTTACGCAAGACCGTTGGTTTCAACC
AATGACTTAACAATGGTGATAGTATTGCAAGTCCGTGTTAAGCcaggctc
ttataaaaaagatcatATTGTAGAAAAGGTTTGTCCGAAAAATTGGTGTG
ATCCACCGTGCATAAAacagtttaaattttttaaaggaTCTGCTCTTGAA
TGGATTGTAAGTGATCCAAAGAATGTGAGACCATACTCTATCTGTGTTAA
AGTTCTCAAACCTGGGGAGTTAACACGATATTCGAAGTTTGCAGATGATA
TATCAAGCCTGCATGCGTCTCCTAAATTATTTATAGGAAAGGATTGGGTA
ATTATTGAGGATCCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021315-exon-sc0000382-1491911889:94477..95374 | TCONS_00021315-exon-sc0000382-1491911889:94477..95374 | Clytia hemisphaerica | exon |
| TCONS_00021315-exon-sc0000382-1510915933:94477..95374 | TCONS_00021315-exon-sc0000382-1510915933:94477..95374 | Clytia hemisphaerica | exon |
| TCONS_00021315-exon-sc0000382-1575043694:94477..95374 | TCONS_00021315-exon-sc0000382-1575043694:94477..95374 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000382 | supercontig | sc0000382:94477..95374 . |
Blast
The following BLAST results are available for this feature:
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