TCONS_00021279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021279
Unique NameTCONS_00021279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021279 ID=TCONS_00021279|Name=TCONS_00021279|organism=Clytia hemisphaerica|type=transcript|length=403bp
aattataagcaaaaaactgACAGGGTGGTGTAAACCCCCCCCTCCGATAT
AAATActaaattttattcaatttattaCTCTTCCTTTATTTTTAGGATTC
GACAACTAATGTGTTGGTATCACCTAACGTTTCGGTATCATCTACGATTA
AGCCCTCGTCGTGGATTGTTTACCACCTATTCATTCAGCCAAAGCCTTAG
CCAAAGCCAAAGCCTTTTACTGTCTAATTTATTTAATTCATAATTTATTA
TAATTGTTTGAATATAAATTGTAATCTCTACgaaattttgttacatttta
cATCCCTAATACACCGTTTAATAAGATGATATCTATCGAAGCTTATCGGA
TTTCGATCGGCAACTTTGATTCTACCAGGCAATTTAACCTTCGTTCTATA
TAT
Run BLAST on NCBI

transcript from alignment at sc0000380:7284..7686

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021279 ID=TCONS_00021279|Name=TCONS_00021279|organism=Clytia hemisphaerica|type=transcript|length=403bp|location=Sequence derived from alignment at sc0000380:7284..7686 (Clytia hemisphaerica)
ATATATAGAACGAAGGTTAAATTGCCTGGTAGAATCAAAGTTGCCGATCG
AAATCCGATAAGCTTCGATAGATATCATCTTATTAAACGGTGTATTAGGG
ATgtaaaatgtaacaaaatttcGTAGAGATTACAATTTATATTCAAACAA
TTATAATAAATTATGAATTAAATAAATTAGACAGTAAAAGGCTTTGGCTT
TGGCTAAGGCTTTGGCTGAATGAATAGGTGGTAAACAATCCACGACGAGG
GCTTAATCGTAGATGATACCGAAACGTTAGGTGATACCAACACATTAGTT
GTCGAATCCTAAAAATAAAGGAAGAGtaataaattgaataaaatttagTA
TTTATATCGGAGGGGGGGGTTTACACCACCCTGTcagttttttgcttata
att
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011908XLOC_011908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021279-exon-sc0000380-1491911889:7284..7686TCONS_00021279-exon-sc0000380-1491911889:7284..7686Clytia hemisphaericaexon
TCONS_00021279-exon-sc0000380-1510915933:7284..7686TCONS_00021279-exon-sc0000380-1510915933:7284..7686Clytia hemisphaericaexon
TCONS_00021279-exon-sc0000380-1575043694:7284..7686TCONS_00021279-exon-sc0000380-1575043694:7284..7686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:7284..7686 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.914375	0.85168	1.44794	0	0.533356	0	1.02062	0.281902	0.541725	0.507886	0.989739	1.09451	0.845985	1.87286	1.06514	1.04909	1.14586	1.65433	1.83765	1.89421	0.985043	0.630109	0.934797	1.7527	0	0	2.33506	3.77752	0.733389	1.83579
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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