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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021275 ID=TCONS_00021275|Name=TCONS_00021275|organism=Clytia hemisphaerica|type=transcript|length=1657bp
CGTTCGCAGCGCGGTAGAGGATGTTTTGCATGCTTTGTTGGCAACCTGAT
AGAATTCAACCAGCATCATGATACCCGCAGTTGTCTCGATTGCCTTATTC
ATCGTTCTCACAATCACCTTCTCATTCAAGACTAAGCGAGGCAAATTTTT
GCCACCTGGACCGAGTGGATTGCCAATTATTGGTTATCTTCACAAACTTG
GATCAAAGCCATTGCATCTTTTGTTAGCTGACCTTGGTGAAACATACGGA
GATATCTTTTCTTTGCAACTTGGATCAAGATTGACCGTCATCCTCAACAG
TAAAGATGCTGTCTATGAAACTTTCGTCAAGAAAGCAAAGATCTTTGCAG
GACGACCAGACTTAGCAACATTCACGACCACCCGGCATGGCGCAACAGGA
ATCAGTATGTGTGATTATACTGACGAATACAAACGAAACAGACAGATGAC
TTTGAAAGCTATGCATTCATTGTATGCTGATAAAGAACGATTCAATGAAA
TCTTGCAACATGAAGCAACAAAGATGATCAATCTGTTCAACGAGAAGTCA
TTGACAAATGAACGATTTGATCCAGCAAATGAATTCCATAAAGTCGTCCC
CAGTATCATGGTCCACGTCATGTATGGTAAGAATTCACCCTACGATGATA
AAGATGTCATGTCATTGGTCAATGTGAACAAAAGATGGTTCCAAAGTGCT
GAGGGAAGCAATCCAGCTGATTTCCTGAAATTCTTGGAGCGGTTCCCCAA
CAAGAGGCTTGACGCCATCCAAGAGAGTTGTATGATGTTTTACAAGTTCG
CTTTTCAGAAGATGGAAGAGTATGAGCAACAAGAATGTAGTGGTTTGTAT
GGAACATATATCCAGTTGTATAAAGAGAAAACAGGCGTCACCGAACTGAC
CAATAAAGACAGATTTGAATTAGGGCGTTGTGTGAATGATATGTTAGGCG
GAGGTTTCGATACTTTAGCGGCCACGCTAACTTGGGCGTTATTGTATTTG
TGGAAACGCCCTGAAGTGATTGCGAAATGTCGAGAGGAGATCGAACGAGT
TCTGAGCGACGAAGATATGATTGGTCTGCATCACGAAAAGCNAGATCGAA
CGTGTTCTGAGCGACGAAGATATGATTGGTCTGCATCACGAAAAGCAATT
ATCCTACTGTATGGCTACAACACATGAGCTACTCCGAGTTTGCTCTGTGG
CGCCGCTCGGTTTACCCCGAAAAACAATGGAAGAAGTGAAAATTGGCGAA
TTTGTCATCCCTAAAGACACAATGGTTATGCCAAACTTGTGGTCCATCAA
TAACCAAACTGAATTATGGAAAAATGCTGAGCAATTCTCACCAGAAAATT
TTCTTGATGAGGAAGGCCATTTGGAATTGAAGAGCATTCGAAACATCGCT
ACTTTCTCCGTCGGGGTTCGAAGGTGTCCTGGTGAGAAATTCGCAACACT
TCAATTATTCGTCTTGTTGACAAACTTTATaaaaaacttcaattttgaTG
TTTGTAAGCCGCCACAAGATATGATACCACAGGGAGGTTTGACTCTTCAA
GCAAAACCTTTTATGATCAAAGTCAGCAAAGTTGACCAATAAAGCATTAC
TcacaaactttcatttttcaaaacttttgtaaaaaaggTATTTTCAATCT
CTTACTT Run BLAST on NCBI transcript from alignment at sc0000380:228751..231147- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021275 ID=TCONS_00021275|Name=TCONS_00021275|organism=Clytia hemisphaerica|type=transcript|length=2397bp|location=Sequence derived from alignment at sc0000380:228751..231147- (Clytia hemisphaerica)
CGTTCGCAGCGCGGTAGAGGATGTTTTGCATGCTTTGTTGGCAACCTGGT
GAGGTCTTGTTGTGCGTGACTGAGTTTTCAATCGATTCCAGACCCCCTGT
ACCGTTAACCACGTATTATAAAAAGGAGGAGGTTTCAAAATCTAATTCAG
ACCCACACTTCATAATGTACGGTTTCTCATATCTCGCTTTATGATCTGAT
TGAGGAATTTTTGAAAGAGTAATAGGTGAGACGGCTCCTCTGCAAAGCAC
TAGATAAGAAACCTGATCACATCAAGTATTTTTGCAAAAGGCTGGGGACA
AGGTGAGGATAAATACTTAGCGAGCGATTTGAAATCATTCTTTTTGACTG
GTCTTACTTTTCGGAAAATCAACATCAATCAATAAGTAACGAATTTTTCT
AATTTCTTTATTCTAGATAGAATTCAACCAGCATCATGATACCCGCAGTT
GTCTCGATTGCCTTATTCATCGTTCTCACAATCACCTTCTCATTCAAGAC
TAAGCGAGGCAAATTTTTGCCACCTGGACCGAGTGGATTGCCAATTATTG
GTGAGTTGGAATGTCTTTCTCGATTGATCATTTTAAAATGCAAAAATCTT
TATCCAAAGTGCCTTCTAACTGATAAGCAATATACTGATATCGCTAATTA
ACGGGCAGATTGCCAAAAAAATGTAATTGAGATAAAAGCAAAGTATAACT
GAAATAACACTTTTCATTTGACTTCTGATACAAAGTGAAAAAATTCAGTA
TCAGTTTATCTCGACAAGTTTTATTATTAGGGAGTAAGAGGAAAACACCA
TATTTGACATTCCGTGCAAAGAGCGTACTGTGTGCTATCGACAAACTCTA
AGAGCTTTTATTTTTACTTTTAATCAACTGTGTCTGAATGATAATTGAAA
ATTCTTATCATTTCTCCCATAGGTTATCTTCACAAACTTGGATCAAAGCC
ATTGCATCTTTTGTTAGCTGACCTTGGTGAAACATACGGAGATATCTTTT
CTTTGCAACTTGGATCAAGATTGACCGTCATCCTCAACAGTAAAGATGCT
GTCTATGAAACTTTCGTCAAGAAAGCAAAGATCTTTGCAGGACGACCAGA
CTTAGCAACATTCACGACCACCCGGCATGGCGCAACAGGAATCAGTATGT
GTGATTATACTGACGAATACAAACGAAACAGACAGATGACTTTGAAAGCT
ATGCATTCATTGTATGCTGATAAAGAACGATTCAATGAAATCTTGCAACA
TGAAGCAACAAAGATGATCAATCTGTTCAACGAGAAGTCATTGACAAATG
AACGATTTGATCCAGCAAATGAATTCCATAAAGTCGTCCCCAGTATCATG
GTCCACGTCATGTATGGTAAGAATTCACCCTACGATGATAAAGATGTCAT
GTCATTGGTCAATGTGAACAAAAGATGGTTCCAAAGTGCTGAGGGAAGCA
ATCCAGCTGATTTCCTGAAATTCTTGGAGCGGTTCCCCAACAAGAGGCTT
GACGCCATCCAAGAGAGTTGTATGATGTTTTACAAGTTCGCTTTTCAGAA
GATGGAAGAGTATGAGCAACAAGAATGTAGTGGTTTGTATGGAACATATA
TCCAGTTGTATAAAGAGAAAACAGGCGTCACCGAACTGACCAATAAAGAC
AGATTTGAATTAGGGCGTTGTGTGAATGATATGTTAGGCGGAGGTTTCGA
TACTTTAGCGGCCACGCTAACTTGGGCGTTATTGTATTTGTGGAAACGCC
CTGAAGTGATTGCGAAATGTCGAGAGGAGATCGAACGAGTTCTGAGCGAC
GAAGATATGATTGGTCTGCATCACGAAAAGCNAGATCGAACGTGTTCTGA
GCGACGAAGATATGATTGGTCTGCATCACGAAAAGCAATTATCCTACTGT
ATGGCTACAACACATGAGCTACTCCGAGTTTGCTCTGTGGCGCCGCTCGG
TTTACCCCGAAAAACAATGGAAGAAGTGAAAATTGGCGAATTTGTCATCC
CTAAAGACACAATGGTTATGCCAAACTTGTGGTCCATCAATAACCAAACT
GAATTATGGAAAAATGCTGAGCAATTCTCACCAGAAAATTTTCTTGATGA
GGAAGGCCATTTGGAATTGAAGAGCATTCGAAACATCGCTACTTTCTCCG
TCGGGGTTCGAAGGTGTCCTGGTGAGAAATTCGCAACACTTCAATTATTC
GTCTTGTTGACAAACTTTATAAAAAACTTCAATTTTGATGTTTGTAAGCC
GCCACAAGATATGATACCACAGGGAGGTTTGACTCTTCAAGCAAAACCTT
TTATGATCAAAGTCAGCAAAGTTGACCAATAAAGCATTACTCACAAACTT
TCATTTTTCAAAACTTTTGTAAAAAAGGTATTTTCAATCTCTTACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021275-exon-sc0000380-1575043694:231100..231147 | TCONS_00021275-exon-sc0000380-1575043694:231100..231147 | Clytia hemisphaerica | exon |
| TCONS_00021275-exon-sc0000380-1575043694:230598..230731 | TCONS_00021275-exon-sc0000380-1575043694:230598..230731 | Clytia hemisphaerica | exon |
| TCONS_00021275-exon-sc0000380-1575043694:228751..230225 | TCONS_00021275-exon-sc0000380-1575043694:228751..230225 | Clytia hemisphaerica | exon |
| TCONS_00021275-exon-sc0000380-1510915933:231100..231147 | TCONS_00021275-exon-sc0000380-1510915933:231100..231147 | Clytia hemisphaerica | exon |
| TCONS_00021275-exon-sc0000380-1510915933:230598..230731 | TCONS_00021275-exon-sc0000380-1510915933:230598..230731 | Clytia hemisphaerica | exon |
| TCONS_00021275-exon-sc0000380-1510915933:228751..230225 | TCONS_00021275-exon-sc0000380-1510915933:228751..230225 | Clytia hemisphaerica | exon |
| TCONS_00021275-exon-sc0000380-1491911889:231100..231147 | TCONS_00021275-exon-sc0000380-1491911889:231100..231147 | Clytia hemisphaerica | exon |
| TCONS_00021275-exon-sc0000380-1491911889:230598..230731 | TCONS_00021275-exon-sc0000380-1491911889:230598..230731 | Clytia hemisphaerica | exon |
| TCONS_00021275-exon-sc0000380-1491911889:228751..230225 | TCONS_00021275-exon-sc0000380-1491911889:228751..230225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000380 | supercontig | sc0000380:228751..231147 - |
Blast
BLAST of TCONS_00021275 vs. Swiss-Prot (Human)
Match: CP1A1 (Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.438e-36 Identity = 80/306 (26.14%), Postives = 147/306 (48.04%), Query Frame = 2
Query: 185 YLHKLGSKPLHLLLADLGETYGDIFSLQLGSRLTVILNSKDAVYETFVKKAKIFAGRPDLATFTTTRHGATGISMCDYTDEYKRNRQMTLKAMHSLYADKER-------FNEILQHEATKMINLFNEKSLTNERFDPANEFHKVVPSIMVHVMYGKNSPYDDKDVMSLVNVNKRWFQSAEGSNPADFLKFLERFPNKRLDAIQESCMMFYKFAFQKM-----EEYEQQECSGLYGTYIQLYKEK----TGVTELTNKDRFELGRCVNDMLGGGFDXXXXXXXXXXXXXXKRPEVIAKCREEIERVL 1054
++ LG P HL L+ + + YGD+ +++GS V+L+ D + + V++ F GRPDL TFT +G + D + R++ + S + E + EA +I+ E F+P V +++ + +G+ ++ ++++SLVN+N + + NPADF+ L PN L+A ++ FY F QKM + +E+ + + I+ +EK +L+++ + V D+ G GFDT+ ++W+L+YL P V K +EE++ V+
Sbjct: 51 HMLTLGKNP-HLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNAFKDLNEKFYSF-MQKMVKEHYKTFEKGHIRDITDSLIEHCQEKQLDENANVQLSDEKIINI---VLDLFGAGFDTVTTAISWSLMYLVMNPRVQRKIQEELDTVI 351 HSP 2 Score: 79.337 bits (194), Expect = 8.438e-36 Identity = 45/141 (31.91%), Postives = 64/141 (45.39%), Query Frame = 3
Query: 1131 LHHEKQLSYCMATTHELLRVCSVAPLGLPRKTMEEVKIGEFVIPKDTMVMPNLWSINNQTELWKNAEQFSPENFLDEEGHLELKSIRNIATFSVGVRRCPGEKFATLQLFVLLTNFIKNFNFDV-CKPPQDMIPQGGLTLQ 1550
L L Y A E R S P +P T + + F IPK V N W IN+ +LW N +F PE FL +G ++ + F +G R+C GE A ++F+ L ++ F V DM P GLT++
Sbjct: 359 LSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMK 499
The following BLAST results are available for this feature:
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