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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021274 ID=TCONS_00021274|Name=TCONS_00021274|organism=Clytia hemisphaerica|type=transcript|length=1741bp
GGTTTCTCATATCTCGCTTTATGATCTGATTGAGGAATTTTTGAAAGAGT
AATAGGTGAGACGGCTCCTCTGCAAAGCACTAGATAAGAAACCTGATCAC
ATCAAGTATTTTTGCAAAAGGCTGGGGACAAGATAGAATTCAACCAGCAT
CATGATACCCGCAGTTGTCTCGATTGCCTTATTCATCGTTCTCACAATCA
CCTTCTCATTCAAGACTAAGCGAGGCAAATTTTTGCCACCTGGACCGAGT
GGATTGCCAATTATTGGTTATCTTCACAAACTTGGATCAAAGCCATTGCA
TCTTTTGTTAGCTGACCTTGGTGAAACATACGGAGATATCTTTTCTTTGC
AACTTGGATCAAGATTGACCGTCATCCTCAACAGTAAAGATGCTGTCTAT
GAAACTTTCGTCAAGAAAGCAAAGATCTTTGCAGGACGACCAGACTTAGC
AACATTCACGACCACCCGGCATGGCGCAACAGGAATCAGTATGTGTGATT
ATACTGACGAATACAAACGAAACAGACAGATGACTTTGAAAGCTATGCAT
TCATTGTATGCTGATAAAGAACGATTCAATGAAATCTTGCAACATGAAGC
AACAAAGATGATCAATCTGTTCAACGAGAAGTCATTGACAAATGAACGAT
TTGATCCAGCAAATGAATTCCATAAAGTCGTCCCCAGTATCATGGTCCAC
GTCATGTATGGTAAGAATTCACCCTACGATGATAAAGATGTCATGTCATT
GGTCAATGTGAACAAAAGATGGTTCCAAAGTGCTGAGGGAAGCAATCCAG
CTGATTTCCTGAAATTCTTGGAGCGGTTCCCCAACAAGAGGCTTGACGCC
ATCCAAGAGAGTTGTATGATGTTTTACAAGTTCGCTTTTCAGAAGATGGA
AGAGTATGAGCAACAAGAATGTAGTGGTTTGTATGGAACATATATCCAGT
TGTATAAAGAGAAAACAGGCGTCACCGAACTGACCAATAAAGACAGATTT
GAATTAGGGCGTTGTGTGAATGATATGTTAGGCGGAGGTTTCGATACTTT
AGCGGCCACGCTAACTTGGGCGTTATTGTATTTGTGGAAACGCCCTGAAG
TGATTGCGAAATGTCGAGAGGAGATCGAACGAGTTCTGAGCGACGAAGAT
ATGATTGGTCTGCATCACGAAAAGCNAGATCGAACGTGTTCTGAGCGACG
AAGATATGATTGGTCTGCATCACGAAAAGCAATTATCCTACTGTATGGCT
ACAACACATGAGCTACTCCGAGTTTGCTCTGTGGCGCCGCTCGGTTTACC
CCGAAAAACAATGGAAGAAGTGAAAATTGGCGAATTTGTCATCCCTAAAG
ACACAATGGTTATGCCAAACTTGTGGTCCATCAATAACCAAACTGAATTA
TGGAAAAATGCTGAGCAATTCTCACCAGAAAATTTTCTTGATGAGGAAGG
CCATTTGGAATTGAAGAGCATTCGAAACATCGCTACTTTCTCCGTCGGGG
TTCGAAGGTGTCCTGGTGAGAAATTCGCAACACTTCAATTATTCGTCTTG
TTGACAAACTTTATaaaaaacttcaattttgaTGTTTGTAAGCCGCCACA
AGATATGATACCACAGGGAGGTTTGACTCTTCAAGCAAAACCTTTTATGA
TCAAAGTCAGCAAAGTTGACCAATAAAGCATTACTcacaaactttcattt
ttcaaaacttttgtaaaaaaggTATTTTCAATCTCTTACTT Run BLAST on NCBI transcript from alignment at sc0000380:228751..230977- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021274 ID=TCONS_00021274|Name=TCONS_00021274|organism=Clytia hemisphaerica|type=transcript|length=2227bp|location=Sequence derived from alignment at sc0000380:228751..230977- (Clytia hemisphaerica)
GGTTTCTCATATCTCGCTTTATGATCTGATTGAGGAATTTTTGAAAGAGT
AATAGGTGAGACGGCTCCTCTGCAAAGCACTAGATAAGAAACCTGATCAC
ATCAAGTATTTTTGCAAAAGGCTGGGGACAAGGTGAGGATAAATACTTAG
CGAGCGATTTGAAATCATTCTTTTTGACTGGTCTTACTTTTCGGAAAATC
AACATCAATCAATAAGTAACGAATTTTTCTAATTTCTTTATTCTAGATAG
AATTCAACCAGCATCATGATACCCGCAGTTGTCTCGATTGCCTTATTCAT
CGTTCTCACAATCACCTTCTCATTCAAGACTAAGCGAGGCAAATTTTTGC
CACCTGGACCGAGTGGATTGCCAATTATTGGTGAGTTGGAATGTCTTTCT
CGATTGATCATTTTAAAATGCAAAAATCTTTATCCAAAGTGCCTTCTAAC
TGATAAGCAATATACTGATATCGCTAATTAACGGGCAGATTGCCAAAAAA
ATGTAATTGAGATAAAAGCAAAGTATAACTGAAATAACACTTTTCATTTG
ACTTCTGATACAAAGTGAAAAAATTCAGTATCAGTTTATCTCGACAAGTT
TTATTATTAGGGAGTAAGAGGAAAACACCATATTTGACATTCCGTGCAAA
GAGCGTACTGTGTGCTATCGACAAACTCTAAGAGCTTTTATTTTTACTTT
TAATCAACTGTGTCTGAATGATAATTGAAAATTCTTATCATTTCTCCCAT
AGGTTATCTTCACAAACTTGGATCAAAGCCATTGCATCTTTTGTTAGCTG
ACCTTGGTGAAACATACGGAGATATCTTTTCTTTGCAACTTGGATCAAGA
TTGACCGTCATCCTCAACAGTAAAGATGCTGTCTATGAAACTTTCGTCAA
GAAAGCAAAGATCTTTGCAGGACGACCAGACTTAGCAACATTCACGACCA
CCCGGCATGGCGCAACAGGAATCAGTATGTGTGATTATACTGACGAATAC
AAACGAAACAGACAGATGACTTTGAAAGCTATGCATTCATTGTATGCTGA
TAAAGAACGATTCAATGAAATCTTGCAACATGAAGCAACAAAGATGATCA
ATCTGTTCAACGAGAAGTCATTGACAAATGAACGATTTGATCCAGCAAAT
GAATTCCATAAAGTCGTCCCCAGTATCATGGTCCACGTCATGTATGGTAA
GAATTCACCCTACGATGATAAAGATGTCATGTCATTGGTCAATGTGAACA
AAAGATGGTTCCAAAGTGCTGAGGGAAGCAATCCAGCTGATTTCCTGAAA
TTCTTGGAGCGGTTCCCCAACAAGAGGCTTGACGCCATCCAAGAGAGTTG
TATGATGTTTTACAAGTTCGCTTTTCAGAAGATGGAAGAGTATGAGCAAC
AAGAATGTAGTGGTTTGTATGGAACATATATCCAGTTGTATAAAGAGAAA
ACAGGCGTCACCGAACTGACCAATAAAGACAGATTTGAATTAGGGCGTTG
TGTGAATGATATGTTAGGCGGAGGTTTCGATACTTTAGCGGCCACGCTAA
CTTGGGCGTTATTGTATTTGTGGAAACGCCCTGAAGTGATTGCGAAATGT
CGAGAGGAGATCGAACGAGTTCTGAGCGACGAAGATATGATTGGTCTGCA
TCACGAAAAGCNAGATCGAACGTGTTCTGAGCGACGAAGATATGATTGGT
CTGCATCACGAAAAGCAATTATCCTACTGTATGGCTACAACACATGAGCT
ACTCCGAGTTTGCTCTGTGGCGCCGCTCGGTTTACCCCGAAAAACAATGG
AAGAAGTGAAAATTGGCGAATTTGTCATCCCTAAAGACACAATGGTTATG
CCAAACTTGTGGTCCATCAATAACCAAACTGAATTATGGAAAAATGCTGA
GCAATTCTCACCAGAAAATTTTCTTGATGAGGAAGGCCATTTGGAATTGA
AGAGCATTCGAAACATCGCTACTTTCTCCGTCGGGGTTCGAAGGTGTCCT
GGTGAGAAATTCGCAACACTTCAATTATTCGTCTTGTTGACAAACTTTAT
AAAAAACTTCAATTTTGATGTTTGTAAGCCGCCACAAGATATGATACCAC
AGGGAGGTTTGACTCTTCAAGCAAAACCTTTTATGATCAAAGTCAGCAAA
GTTGACCAATAAAGCATTACTCACAAACTTTCATTTTTCAAAACTTTTGT
AAAAAAGGTATTTTCAATCTCTTACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021274-exon-sc0000380-1575043694:230846..230977 | TCONS_00021274-exon-sc0000380-1575043694:230846..230977 | Clytia hemisphaerica | exon |
| TCONS_00021274-exon-sc0000380-1575043694:230598..230731 | TCONS_00021274-exon-sc0000380-1575043694:230598..230731 | Clytia hemisphaerica | exon |
| TCONS_00021274-exon-sc0000380-1575043694:228751..230225 | TCONS_00021274-exon-sc0000380-1575043694:228751..230225 | Clytia hemisphaerica | exon |
| TCONS_00021274-exon-sc0000380-1510915933:230846..230977 | TCONS_00021274-exon-sc0000380-1510915933:230846..230977 | Clytia hemisphaerica | exon |
| TCONS_00021274-exon-sc0000380-1510915933:230598..230731 | TCONS_00021274-exon-sc0000380-1510915933:230598..230731 | Clytia hemisphaerica | exon |
| TCONS_00021274-exon-sc0000380-1510915933:228751..230225 | TCONS_00021274-exon-sc0000380-1510915933:228751..230225 | Clytia hemisphaerica | exon |
| TCONS_00021274-exon-sc0000380-1491911889:230846..230977 | TCONS_00021274-exon-sc0000380-1491911889:230846..230977 | Clytia hemisphaerica | exon |
| TCONS_00021274-exon-sc0000380-1491911889:230598..230731 | TCONS_00021274-exon-sc0000380-1491911889:230598..230731 | Clytia hemisphaerica | exon |
| TCONS_00021274-exon-sc0000380-1491911889:228751..230225 | TCONS_00021274-exon-sc0000380-1491911889:228751..230225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000380 | supercontig | sc0000380:228751..230977 - |
Blast
BLAST of TCONS_00021274 vs. Swiss-Prot (Human)
Match: CP1A1 (Cytochrome P450 1A1 OS=Homo sapiens GN=CYP1A1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.922e-36 Identity = 80/306 (26.14%), Postives = 147/306 (48.04%), Query Frame = 2
Query: 269 YLHKLGSKPLHLLLADLGETYGDIFSLQLGSRLTVILNSKDAVYETFVKKAKIFAGRPDLATFTTTRHGATGISMCDYTDEYKRNRQMTLKAMHSLYADKER-------FNEILQHEATKMINLFNEKSLTNERFDPANEFHKVVPSIMVHVMYGKNSPYDDKDVMSLVNVNKRWFQSAEGSNPADFLKFLERFPNKRLDAIQESCMMFYKFAFQKM-----EEYEQQECSGLYGTYIQLYKEK----TGVTELTNKDRFELGRCVNDMLGGGFDXXXXXXXXXXXXXXKRPEVIAKCREEIERVL 1138
++ LG P HL L+ + + YGD+ +++GS V+L+ D + + V++ F GRPDL TFT +G + D + R++ + S + E + EA +I+ E F+P V +++ + +G+ ++ ++++SLVN+N + + NPADF+ L PN L+A ++ FY F QKM + +E+ + + I+ +EK +L+++ + V D+ G GFDT+ ++W+L+YL P V K +EE++ V+
Sbjct: 51 HMLTLGKNP-HLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQGDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCYLEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLVNLNNNFGEVVGSGNPADFIPILRYLPNPSLNAFKDLNEKFYSF-MQKMVKEHYKTFEKGHIRDITDSLIEHCQEKQLDENANVQLSDEKIINI---VLDLFGAGFDTVTTAISWSLMYLVMNPRVQRKIQEELDTVI 351 HSP 2 Score: 79.337 bits (194), Expect = 8.922e-36 Identity = 45/141 (31.91%), Postives = 64/141 (45.39%), Query Frame = 3
Query: 1215 LHHEKQLSYCMATTHELLRVCSVAPLGLPRKTMEEVKIGEFVIPKDTMVMPNLWSINNQTELWKNAEQFSPENFLDEEGHLELKSIRNIATFSVGVRRCPGEKFATLQLFVLLTNFIKNFNFDV-CKPPQDMIPQGGLTLQ 1634
L L Y A E R S P +P T + + F IPK V N W IN+ +LW N +F PE FL +G ++ + F +G R+C GE A ++F+ L ++ F V DM P GLT++
Sbjct: 359 LSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAIDKVLSEKVIIFGMGKRKCIGETIARWEVFLFLAILLQRVEFSVPLGVKVDMTPIYGLTMK 499
The following BLAST results are available for this feature:
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