TCONS_00021267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021267
Unique NameTCONS_00021267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021267 ID=TCONS_00021267|Name=TCONS_00021267|organism=Clytia hemisphaerica|type=transcript|length=1398bp
CTATAAACCGTGACCGAAAATCGAAACacattcttttaaaatcatAATGT
TTTGGAATTTGATGAGTGAAGTCATGTGGATTCTTGGAAATTTTATTCTG
TAATTTTAATCAAGCTGTTGTAACTCGTTGATCCTGTCGTAGTTGGAACC
ATCTTTGGTAAATTATTTGGCATGCTGTCGTGCATGGTATCAATCAAATT
TTGGGATACTGAACATTGCAACTTCCCTTTCTTGTGTGTTTACATTCGAC
CTGGTTGATTTGAGAATCCGAAATGTGGTGACCTTTCAAGACTGTTCCCA
ATCCATTTGTGGCCGTAACGTAGCCTTGGCTTGCCTGTCAACCTCCACAA
ACCAATCAGCGGAGTGCTTCCTGCCAGTCCTGCCCTGTTGTGACCTAGAT
TCCATCAATAACTCCAAGTTTGCTGGGTGAGTCGTTTCCTTTTTAGAGTT
TGTTGTCCCATCTATACGTGTCCAGCATTCCCACATGCGTCTCTAATAGC
ACACTGACTATTATTATACCTCACCCTAGCTGGATTCCCTGCACTAGTTT
CAACATGGTTCAACTATCCCGTTTTTTATTTAGACTtcctcaacttcagt
tgagctatttAGAATTAAAGTGTGTCTGTCAGTGTGTGGGTGTACGTGGG
TGCATGTGCAGATGTTGGTCGTCACCTGGATGCATGCTCAGGACCTGGGG
GTCGGCTGATTTTGTTAAAGTTTGTACATTTAAGTTCCTTGGGTGAGTCC
TTGGAGCATTCTTCATTCTTCTTGGGAGTTGGCTGATTTTGCTAAAGTTT
TGTACATTTAAGTCCCTTGGGTATAAGTCCTTGGGGCATTCCTCTCATTT
TAATTGAATTTAGATGGGAGGGACGTACTCATAGGTTCTGGCATTCCTTG
GTCAATACTTTGAAGTAGTTAATATTTTGCATGCTTGTTCCTTGGAATCC
TAGGAGTGTTCTGTTATTCCCCCTAGAGGTTGATTGGTGTGAATTTTGCA
CACAAGTTCTTGAGTGTATCCCTGGGCGTGCTTCATACTCTATTAGATTT
TGGGGATGGGGTTACTGGTTTTTGTCCTAAACTTGGTACAAAAAGtgggc
aggctggagacctCGAAATTGTCTGAATCCGCTTCAATTTCGAGCATATT
GCGCTTCGGGTGAATTCACTGGGGCGTTTCCCCACTTTTCAGTTTTGCAA
TTTAGTTTTAGGGTCACCAATTAAAGGCTGAGAACTAAGTCGAAATTTGG
ACATACTTGGGATCTCTGAAGTGTTCGAaaggcaaaaatttgcattCATG
GtccttgggtgaatccctgggttagtttttcttcattttcaatgtgaTAT
GATTCAAGGGTGTTGTCACACCCCATAACGCCAATATATAACACCATN
Run BLAST on NCBI

transcript from alignment at sc0000380:143785..145324-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021267 ID=TCONS_00021267|Name=TCONS_00021267|organism=Clytia hemisphaerica|type=transcript|length=1540bp|location=Sequence derived from alignment at sc0000380:143785..145324- (Clytia hemisphaerica)
CTATAAACCGTGACCGAAAATCGAAACACATTCTTTTAAAATCATAATGT
TTTGGAATTTGATGAGTGAAGTCATGTGGATTCTTGGAAATTTTATTCTG
TAATTTTAATCAAGCTGTTGTAACTCGTTGATCCTGTCGTAGTTGGAACC
ATCTTTGGTAAATTATTTGGCATGCTGTCGTGCATGGTATCAATCAAATT
TTGGGATACTGAACATTGCAACTTCCCTTTCTTGTGTGTTTACATTCGAC
CTGGTTGATTTGAGAATCCGAAATGTGGTGACCTTTCAAGACTGTTCCCA
ATCCATTTGTGGCCGTAACGTAGCCTTGGCTTGCCTGTCAACCTCCACAA
ACCAATCAGCGGAGTGCTTCCTGCCAGTCCTGCCCTGTTGTGACCTAGAT
TCCATCAATAACTCCAAGTTTGCTGGGTGAGTCGTTTCCTTTTTAGAGTT
TGTTGTCCCATCTATACGTGTCCAGCATTCCCACATGCGTCTCTAATAGC
ACACTGACTATTATTATACCTCACCCTAGCTGGATTCCCTGCACTAGTTT
CAACATGGTTCAACTATCCCGTTTTTTATTTAGACTTCCTCAACTTCAGT
TGAGCTATTTAGAATTAAAGTGTGTCTGTCAGTGTGTGGGTGTACGTGGG
TGCATGTGCAGATGTTGGTCGTCACCTGGATGCATGCTCAGGACCTGGGG
GTCGGCTGATTTTGTTAAAGTTTGTACATTTAAGTTCCTTGGGTGAGTCC
TTGGAGCATTCTTTATTCTTCTTGGGAGTTGGCTGATTTTGCTAAAGTCT
TGTACATGTAGTTCCTCGAGTGAGTCCTTGGGGCATTCTTCTTCTTCTTT
TTTTTTACATTTATCTTACATTTAAGTTCCTTGGGTGAGTCCTTGGAGCA
TTCTTCATTCTTCTTGGGAGTTGGCTGATTTTGCTAAAGTTTTGTACATT
TAAGTCCCTTGGGTATAAGTCCTTGGGGCATTCCTCTCATTTTAATTGAA
TTTAGATGGGAGGGACGTACTCATAGGTTCTGGCATTCCTTGGTCAATAC
TTTGAAGTAGTTAATATTTTGCATGCTTGTTCCTTGGAATCCTAGGAGTG
TTCTGTTATTCCCCCTAGAGGTTGATTGGTGTGAATTTTGCACACAAGTT
CTTGAGTGTATCCCTGGGCGTGCTTCATACTCTATTAGATTTTGGGGATG
GGGTTACTGGTTTTTGTCCTAAACTTGGTACAAAAAGTGGGCAGGCTGGA
GACCTCGAAATTGTCTGAATCCGCTTCAATTTCGAGCATATTGCGCTTCG
GGTGAATTCACTGGGGCGTTTCCCCACTTTTCAGTTTTGCAATTTAGTTT
TAGGGTCACCAATTAAAGGCTGAGAACTAAGTCGAAATTTGGACATACTT
GGGATCTCTGAAGTGTTCGAAAGGCAAAAATTTGCATTCATGGTCCTTGG
GTGAATCCCTGGGTTAGTTTTTCTTCATTTTCAATGTGATATGATTCAAG
GGTGTTGTCACACCCCATAACGCCAATATATAACACCATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011902XLOC_011902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021267-exon-sc0000380-1575043694:144598..145324TCONS_00021267-exon-sc0000380-1575043694:144598..145324Clytia hemisphaericaexon
TCONS_00021267-exon-sc0000380-1575043694:143785..144455TCONS_00021267-exon-sc0000380-1575043694:143785..144455Clytia hemisphaericaexon
TCONS_00021267-exon-sc0000380-1510915933:144598..145324TCONS_00021267-exon-sc0000380-1510915933:144598..145324Clytia hemisphaericaexon
TCONS_00021267-exon-sc0000380-1510915933:143785..144455TCONS_00021267-exon-sc0000380-1510915933:143785..144455Clytia hemisphaericaexon
TCONS_00021267-exon-sc0000380-1491911889:144598..145324TCONS_00021267-exon-sc0000380-1491911889:144598..145324Clytia hemisphaericaexon
TCONS_00021267-exon-sc0000380-1491911889:143785..144455TCONS_00021267-exon-sc0000380-1491911889:143785..144455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:143785..145324 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.19101	3.19172	3.48795	1.71174	10.3393	8.79045	7.28826	10.6235	2.33024	6.40711	3.97399	2.08385	3.21617	2.74588	3.79308	7.18248	5.97183	4.16946	3.38102	4.0897	4.0006	4.37943	3.26157	5.20942	1.86953	6.17026	5.89461	5.92667	5.76574	4.87229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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