TCONS_00021262 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021262
Unique Name	TCONS_00021262
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1430

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000380:196425..200728+

transcript sequence

>TCONS_00021262 ID=TCONS_00021262|Name=TCONS_00021262|organism=Clytia hemisphaerica|type=transcript|length=1430bp
NAATTTGATTAAAACAGCATCTGGTATTGAATTTGGAAGaTTAATGGCAC
GAGATATCGGTGGCTCTGACCCTGAAAGAATGTCTGCTGCAAATACTGCA
AAATATGTAACCGAAGTCTTTCAAGGAACTTCAATTAAAGTAAAAGTGAT
CGAAGACCGAGATGCATTTGTGAAAGATTATCCTCTCTTTGCTGCTGTTG
ATCGATGTGCTACAGAGGTGGACAGACACGCAGGTCGCATCATTGAATTG
GAATATACGAGTGATAATGTGTCTGATACCTACATGTTCGTTGGAAAGGG
TGTAACTTATGACACTGGTGGTGCCGACGTGAAAGCTGGAGGCGTCATGG
CTGGTATGCACAGAGATAAATGCGGAGCGGCAACAGTTGCTGGAATATTT
GGAATGCTCGAGAAATTGAAACCGAAAGGAATCAAAGTTGTTGGAAGAAT
GGCCATGGTTCGAAACAGTATCGGAAAAGATTGTTACGTTGCCGATGAGA
TCATCACATCAGCAGCAGGTGTTCGTGTTCGTGTTGGCAATACTGATGCA
GAAGGGCGAATGGCCATGACTGATCCTCTATATCATACCAAACAACAGgc
ATTGGATGAAGTGAATCCACATTTATTCACAATTGCCACGCTCACTGGTC
ATGCAGTGGTCGCCGTTGGGCCTGAATACACTTGCATTATGGATAATGGA
CCAGCCGAAGAGACAGACACAGCCCGAACACTTCAAAAAATTGGTCATGG
TTTATCTAATCCATTCGAAATATCAACCATTAGACGTGAGGATTATGCTT
TTTGTGATGGTCGAAATGAGTATGAAGACCTAATCCAATGTAACAATCAA
CCTTCTTCAAGAACACCGCGCGGTCATCAATTTCCCGCCGCCTTCATGAT
CTCTGCTTCAGGTCTCAAGAAGcACGGTATTGATTCCGACCGTCCCTTAA
AATACACGCATATGGATATTGCTGGATCATCCGGTAGCTACCCGGGGACC
CCAACAGGTGCACCACTCATAGCTTTAGCCAAAATGATGAAGATGTTTTG
AATGGTTGGTCGTCGCCCTTACAATTTCTTAGGATGTATTCtaattttta
ggtttttaaactCTTAGGtaattaactttctttattctCAAAACATAAAA
GGGCATCTTTCGTCTTATCTTAGCGAGAAATTGTAATAATATGGCGGTTT
CTTTATTATTCTTGTTCGATCGACTGTCTCGATTAGTTAATTTTGATCAC
AATCAAAATgttgtttataattttatttttaaggttAAGAtatgatttct
ttatttttgtaatttgtgGATTAGTTTTTTATGTTtggtatttctatttc
taagagagtttattttgttttttattccaatttctttcaataattTTAGA
GTTTATTTTTCGAATAATTTTCGATTTAAA

Run BLAST on NCBI

transcript from alignment at sc0000380:196425..200728+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021262 ID=TCONS_00021262|Name=TCONS_00021262|organism=Clytia hemisphaerica|type=transcript|length=4304bp|location=Sequence derived from alignment at sc0000380:196425..200728+ (Clytia hemisphaerica)
NAATTTGATTAAAACAGCATCTGGTATTGAATTTGGAAGGTAAATCGTTG
AATTTGGCTTAAAGAACGTCTTAGAATCTGGAATATTATGTTTCTGGCTT
ACTTAAAAATCATTGCTGTTACTCTAACAAAAGATAACATGAGATTACTT
CACGGTTGATTATTTAAATCTGTAACGCTCTTTTCCACCAATTTGTATTC
ACATATACGAAAATAAAATGTCCAGCTTATTCttaattgttttctttaga
TTAATGGCACGAGATATCGGTGGCTCTGACCCTGAAAGAATGTCTGCTGC
AAATACTGCAAAATATGTAACCGAAGTCTTTCAAGGAACTTCAATTAAAg
taagtgacgtcacaattatACTCCCAAAAATTGAAGCCTGAGTAATAACA
TAGCAGTATTTGTACACAAATGAATGGATTTTCCCGTTCTTAATTCACAT
TTTAGATTAATCTATTTTCTCCcctttattttgaattttctttcctTCCA
GGTAAAAGTGATCGAAGACCGAGATGCATTTGTGAAAGATTATCCTCTCT
TTGCTGCTGTTGATCGATGTGCTACAGGTGGagacaatttaaaaatttca
tgCTACATTGTGTCACGCTTCTTAACATTACTCGCTTTGTTTTCaaggta
aaaaaaaagattcgatctataaattgcaatttttatttttacttgacAGA
GGTGGACAGACACGCAGGTCGCATCATTGAATTGGAATATACGAGTGATA
ATGTGTCTGATACCTACATGTTCGTTGGAAAGGTAATCAAGTGTACTTTA
TTAGAATAATCCGAACTTAAAATGACACAAGTCACGGGTTCATAATTAAG
GGAATCTTTCTTTACAATATCAAAGGTAAAAGATCAAGAAAATCATTTAC
atataaaaaaatcagaatTACCCAAACCATTAAATAGTTATATAACACAC
TTTAACCACAAGATCTGCTAATTCTTCTATCCTTCATAAATACACAGGGT
GTAACTTATGACACTGGTGGTGCCGACGTGAAAGCTGGAGGCGTCATGGC
TGGTATGCACAGGTAAAGTGGCATTTTCCTGATCCCAACATTAATTTCAC
CTCTTACAAACTGCGGTAGGCTCTTCTCATAAACCAATGGAAGTATTTTT
GCTAACTTATCATTCATAGAAACCTAAGTTTGCCTTTGTTTTATGTGCAG
AATAGCAAATATGTACAACACTGCAGTCTCCgaaactcgaacacgcacgg
ggaacacaaatttgtacgatttaaggaaatttcgaggaATTGactaaggt
ttataaggcattgttaattaAATGAAGGGaacagaaaacttgttcgagtt
aaggagacattcgagttatggaggttcgagTAATGAAGACTTCACTGTGT
ACTTTAGATTTTGACATACGAGGTTTTCctctcaaatattttttctcctt
tCATACGATTCTATATTTTGTTTACAGAGATAAATGCGGAGCGGCAACAG
TTGCTGGAATATTTGGAGTAAGACCTTTTTATCGTCTTTTGATTTCGCTT
ATGCaaattttgaaatcaacgTGAATACATGCACACCATTGTTTTAGTGG
TTAATCTTCAGcataattttttgttcttttttgcaGATGCTCGAGAAATT
GAAACCGAAAGGAATCAAAGTTGTTGGAAGAATGGCCATGGTTCGAAACA
GTATCGGAAAAGGTacaatttttttaagagtcttcatcCAGTGGAAGACG
CATCATTTAACGCatcatttgcttacacagcatttttaaactaaagaaaa
aacaatttcttGCCCTTCCGTGCTGCTCGAGCACAAATTTTatgagaatt
tttcagttaattcTGCTTTGTTTCGCTTATTTCAACATAAAAAAAACGGt
aagatatttttttaaaataatggaACGACTTAATTGATCACATGTTTCCT
TCATTCAGATTGTTACGTTGCCGATGAGATCATCACATCAGCAGCAGGTG
TTCGTGTTCGTGTTGGCAATACTGATGCAGAAGGGCGAATGGCCATGACT
GATCCTCTATATCATACCAAACAACAGGTTAGTTTTGATACCTAAACCCC
ATTTTATGTTTTGGAAGGAATATTGTCTCTTAGAGTTACTCTCGATTACA
GAAAAGAAGTAAAACACCCGCGTTAGCCAAGTTCTTTAGAGATTTTTAAA
CTACTTTTTCATGACCTCCAAATGACAGACTCTTCTTATGAAAtggtaaa
agtaaaaaatcaaagCATGCTTTTTATATGTTCTGGATTAAgcttaggct
acgtcatatttTCCTTCCTGTCGATCGTAAAACTCCCTACTCAAGAATAA
GGCCTTAAAAGCCTGGAGTAAACTATTGTGAAGAGTTTAATTTAGGTTTA
TAATCCCAAATTGTGGTAAACTATGGTAAACACTTGTCATTATACTTCTG
TAGCTTCATTTCTGCGaaaactaactttttcattttaattttttcaggcA
TTGGATGAAGTGAATCCACATTTATTCACAATTGCCACGCTCACTGGTCA
TGCAGTGGTCGCCGTTGGGCCTGAATACACTGTAAGATCGATTGCGCttt
taattattcaatggcGTGTTCACTTTCAGTCAACAATACGATTATTTTTC
AAAGCCTGACGATCCTTTCTTTGTATAACTTCGGCTATTGTTATACAAAG
GTCTCAAAAAAGCTCTCGTACGGCGTATTGATTTCCCAGCTGggacacaa
cgttatttcaacgttcatctaacgttatattgaCGTTGTGATCATTAGAT
ggacgtcgaaacaacgttgtgtaccagctagGCTTTGATGAGTATATTtt
aatgttcaattttttttgtatttcagTGCATTATGGATAATGGACCAGCC
GAAGAGACAGACACAGCCCGAACACTTCAAAAAAGTACTTCTTATTTATA
TTCACCATTTTCACTTTTCATTGTTTTCCCTtatattctttcatttttaa
tgaTTGTTCTGTCTTTCTTGCTTTTTTAGTTGGTCATGGTTTATCTAATC
CATTCGAAATATCAACCATTAGACGTGAGGTAAGATGATCAACGATTTAT
TACAGCTGACTATCTTTCATTGAATTTTCAAGGGAATCAGTTTTTCATCG
AATAAACGTTTCGAATGGTAGAAAGTTGTTTATGAATAGTAAaacgtcga
ataagagagtATCAACTTTAcgtttgaaaaagtttgtttagcATGTGTAT
TATTAGTCTTATTCAAAACAGGCTGTCTTTGAATTTTCAGTTCGTAATAT
TATCCGTTATTTACCAATCTTAGGATTATGCTTTTTGTGATGGTCGAAAT
GAGTATGAAGACCTAATCCAATGTAACAATCAACCTTCTTCAAGAACACC
GCGCGGTCATCAATTTCCCGCCGCCTTCATGATCTCTGCTTCAGGTCTCA
AGAAGGTTTgtaattcattttctttttcaatctgcataaagaaaaacaat
acaTAATTTTTACTTTGAGGACATCCAAGAGAGCTTGATAATATCTTTTA
ATCTCGTCTATTTAACTAATAGTTTTAGAAGGCATTTTCACAAGGCTAGT
CGGCTAGGcattttttctcatttaaaTCTTAGCCAACGAGGaacaagttt
ttatttctttcttttagtaATATCATTTATCTAGTCTATTTAACTAATAG
TTTTAGAAGGCATTTCACATGGCTAGTTGGCTAGGCATTTTTTGTCATTT
AAATATTAGCCAACGTGAGAaacaagtttttatttctttcttttagcACG
GTATTGATTCCGACCGTCCCTTAAAATACACGCATATGGATATTGCTGGA
TCATCCGGTAGCTACCCGGGGACCCCAACAGGTGCACCACTCATAGCTTT
AGCCAAAATGATGAAGATGTTTTGAATGGTTGGTCGTCGCCCTTACAATT
TCTTAGGATGTATTCtaatttttaggtttttaaactCTTAGGtaattaac
tttctttattctCAAAACATAAAAGGGCATCTTTCGTCTTATCTTAGCGA
GAAATTGTAATAATATGGCGGTTTCTTTATTATTCTTGTTCGATCGACTG
TCTCGATTAGTTAATTTTGATCACAATCAAAATgttgtttataattttat
ttttaaggttAAGAtatgatttctttatttttgtaatttgtgGATTAGTT
TTTTATGTTtggtatttctatttctaagagagtttattttgttttttatt
ccaatttctttcaataattTTAGAGTTTATTTTTCGAATAATTTTCGATT
TAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011899	XLOC_011899	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000380	supercontig	sc0000380:196425..200728 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.79581	3.5168	4.93539	6.88855	0	0	0	0	10.7451	9.06715	14.8681	6.798	8.51266	5.6589	20.3313	24.0889	16.4677	12.6562	11.0478	8.73315	2.3789	3.20399	5.74261	6.81684	0	0	9.57817	6.43903	14.0142	9.39343

Blast

[Close]

BLAST of TCONS_00021262 vs. Swiss-Prot (Human)
Match: PEPL1 (Probable aminopeptidase NPEPL1 OS=Homo sapiens GN=NPEPL1 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.544e-17
Identity = 74/253 (29.25%), Postives = 109/253 (43.08%), Query Frame = 2

Query:  227 HAGRIIELEYTSDNVSDTYMFVGKGVTYDTGGADVKAGGVMAGMHRDKCGAATVAGIFGMLEKLKPKGIK--VVGRMAMVRNSIGKDCYVADEIITSAAGVRVRVGNTDAEGRMAMTDPL-YHTKQQALDEVNPHLFTIATLTGHAVVAVGPEYTCIMDNGPAEETDTARTLQKIGHGLSNPFEISTIRREDY--AFCDGRNEYEDLIQCNNQPSSRTPRGHQFPAAFMISASGLKKHGIDSDRPLKYTHMDI 970
            H   +  L +T D  + T  +VGKG+ YDTGG  +K    M GM RD  GAA V G F    K   +G K  +     +  NS+G +    D+I    +G  V + NTDAEGR+ + D + Y  K    D +      +ATLTG   +A G  +  ++ N    E    +  +K G  +        +   ++  A  D +N   D    +N PSS         A   I++       I  D P  + H+DI
Sbjct:  237 HPPALAVLSHTPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLGAFRAAIK---QGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADII----LDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLVYCPELHFSEFTSAVADMKNSVADR---DNSPSSC--------AGLFIASH------IGFDWPGVWVHLDI 465

The following BLAST results are available for this feature:

BLAST of TCONS_00021262 vs. Swiss-Prot (Human)

BLAST of TCONS_00021262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PEPL1	1.544e-17	29.25	Probable aminopeptidase NPEPL1 OS=Homo sapiens GN=...	[more]

You are here

TCONS_00021262 (transcript) - C. hemisphaerica