TCONS_00021250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021250
Unique NameTCONS_00021250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021250 ID=TCONS_00021250|Name=TCONS_00021250|organism=Clytia hemisphaerica|type=transcript|length=3598bp
TTATACCTTTCTCTCGTTTACTATTTCTCTTTCAACCTTTTGATTACCTT
TGTTGCTAGCCCCACAAAGCAAGAGAAATAGAATTAATAGCTTTGTCAAA
ACAATAAGAAAATCCAGCTGCATTTTGAAGGAGAAATTTGGCATGATGAC
AAAATACTTTTAACTTTAGCTTGACATCAAATGTTATGAAATAATATCAA
ATGGTGTGCAAAAtgtgaaaattgtttttcttatcGTGAAAAAAGTCACG
CACTGGCTTTCCTTCTGCGTGACTTGGTTATTGAGCCTTTATTCATATTA
AAGAGTTTTTCAGCTATGGTTTTTGAATTAACACTGGCATTGGGTTTGTT
GAATTAACATTATAATATTATCATCAATTATTGGTCCATTAGATAAAAGa
gCAAAACAATGACAGCACCAAGTGAAGAATTATCATTCCATAATGCAATC
AACAATCAAAAATTACCCATCGTTCTTCAAGCGACAAAAAGTTGCGTCCT
GGGTGAGCGAACCGTTCTGGAGGAAGACCAAATCTTAACTGTCTTGGATC
GGGCTCACGTTGATCTTGTGACATGTAAGGACGCTGATGGGAAAACTTTC
AAGATCGCCAAAGATATGGTTTTACATTCTCCAATACATTATGTAGAGGA
GTTTTACCCGCGGACCACCCAAGAACTGGAGGAGATGATAGGCAATGTTA
GTTATGTTCAAACTAAGAGCTTTTATAAAGACAACTTGAATACCTTTGGT
CCTTTGGAAGTGTTCAAATTCACTAgctattttgatgaaaagacCATCGT
TTTACAGACCAAATCTGAAGATAAGTTTTTCCTGAATGTAGAAGTCTTGT
TGAATTCCAAACTCTTCGTCCTGGTCAAGATTAATGGAAACAAGAAAAGA
TTCCATGACTTTTTGGAGCATTTTGAATCTGAACAGATGATTCGATTGGA
TGATCCTACCTCCAATAAAATGATGTATCCAAACTTTTCCGTCGAATCAG
TCGGTAAATACGAAGTCGCTTACACAGTTACTGATATCAATAATTCGATG
GAACTCAGATACGAGACGTTCCCACTTGATCGACGTATCACGTTCCGGCG
AACCGGCAAGAAGCCACCAGAATATGTCGAACAATTTGGGCGCTACAATA
CTGAATCTTACCTGGAGAATCTGAAACAAGTCAAGATCGCAATGAGCTAT
GACAATTATTTACCACGTTTCTATGGTAATCTGATCATTAAGAATCCATA
CTGGACTGATTTACAGCGTCCGAATAAGCTAAACCTGGCCAACGAAAACA
AACCAGGCGTCCGAGAATCACTTCGCAGAGGACTCAAAAATTTCATTCGC
TCTTCGCCATCCAAAGAAGATCTCCGAATTCCCGGTATCGAGAAACCGCA
AACCATACCTCCTCCCAAGAATGTTCCATCTCCAACCAAACAACAAGCCC
TCGCTCCAAGGAGCAGCTCAGACGCACCGCGCCCTACTCAAAGAACTGTT
AAGAAGGCTGACACTAACCCAATCTACGATATCGATACTTGGAAGCTAGA
GCAGCTCAGACAGGAATTTGCCAAGAATAAAGTTGACGGAGTACCCATCA
AACCTCCGAGAAGAAGATTGCCGAGACCGAAATCGTTAGATATGGATCAT
CCACACAGTATGTTTTATAACGAGCTGAAAGAAGATAATCTCTACGAGAA
ACCTTTCAACGAGAAATCACCACACGGTAAACTTAAGCACGTCAAAGATC
AAGAAATCTTTCAATATCAACGAAGTCCCTCTTTACCGATCCGCGTCCCA
CTTCAAGCCGAACGCCCCACTCAACGCACCCATTCCGCCTCTCCGCCCTC
ATTTTATCCGCCCTCGTCTTCGTTTGAAGGATTAGATTCAGGAGTGGACT
CACCTAGTGATAACAGAAGCCTTGGTGAGAtgctcaaaagatttcaaacc
TCTTCGCCACAACCTCAACCACAACAAGAGAATCGAACACGTTCACACAG
TGCTATGGAAAAACGCAAATCACTTTCACAATTATCCCTCTCTGGATCCG
ACCTCAACATTTCATACCCTTTcaatttcaaacatcaaaaaggGCATGGT
ATTCCTGAGAACCTCTACGCAATACCAGGTCAACAAAGGTCAAGTTTCAA
CCAACTCGACGAAACCAATCAATTTCCAGATCTTGAGCAAATAACACAGA
ACACAAGACGAAACACCGCTTTCAGAAGCCATATCTATGAATCTGTCATT
TATGCTGACGTCAAAAATGAGGTTAAAGGCAATCCAATCTTTGCTGCTGA
AGTAGAAAGCATGAACTCTATCAAAGAATTTACTATCGACGATGTGAAGG
AATTATTGACTCAATTAAAACTTGAGAGACATGTGCAAACGTTTGAGGAT
GAGATGGTCACAGGTTATATGCTTGTTGAAAAATTCACAGAATTTCACGG
AGAAATGGGACTTACTCCTTTTGAGGCtcgaaaactttacaaatatgtTC
GTGGCTGGAGACCGACGATTCTTAATTCAGGACACGAGAATATGAACTTC
AAAGAATGGTCGATTAATGAAGTCGAAGCGCAACTTATTAAACTAAAACT
ACCAATGTTTGCAATTTTTTGTTCAGATAATCTTATTGATGGTGCTCTGT
TGTTAGATATGATTCAAAACAAATTACTGACAACTTTGGAGCAGGATAAA
GTGAcattaaagaaagttgagattGCAAGGATCGaagcttattttgaaaa
tccTCAACAGTATGAACATATGAGGGCCGATAGTAATTCAAGCAACTTAA
GTGCTTGATTTAACGAAAACTGTCACCAAAAAAGAGAACTcgaagtttta
gtttttttacatacgtaatattttttattaagtttcatttttcgTAAACC
ATAAAAATTAGTTTGCTTAATTGAGTATCTAACTATTAATTATGGTGTAT
gtgggtgtttttttttaatctcagtcgaaaaaatatttacacTTATTTTG
ATATCTTTTCCAAAGATGACTGGATTGACTGCTTTTAAAAACTAGTTCAA
AATAAGTCTAGCTTACTTTAATTTAAAAGGTAAAGGTATTCCATTTGAAA
TCTCGATCAATTGAGTATTTAAAATCGTTAAATACCTATTAATAAAAGCT
CTCTTGTGTACGTGTGGgtagatgtttttattttccatccaattttattt
tatttaaagaTACAAAGTTAGATAATATAAAGACCGTCTAAAATCTCACA
CAAACAAGTACTAGTAGGGTATTTATTAAGATGTTGACACGCCTATTTTG
CCCCCGCCTGGCTCTAAATAACCTTTGCATAAAGCTTTCAGTTGAGGTTT
CAGCCTGCTTCTAAAAGTTGTATTAGAATGTGAAATAACATCgaactttt
gaaaagttttatttctagAAATTAAAAACTCTGTTTAGGTATTACCCCCT
TTTCTATCTTTACCtcgagtgacgtcaaaaaaagataatttatgttaatt
tatcccattaaaatttatttttcatttatttttcttttgtaagtattttt
cttttcaacatTTCACAatagttgaaaaaaaaagtatttaaagTACCA
Run BLAST on NCBI

protein sequence of TCONS_00021250-protein

>TCONS_00021250-protein ID=TCONS_00021250-protein|Name=TCONS_00021250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=799bp
MTAPSEELSFHNAINNQKLPIVLQATKSCVLGERTVLEEDQILTVLDRAH
VDLVTCKDADGKTFKIAKDMVLHSPIHYVEEFYPRTTQELEEMIGNVSYV
QTKSFYKDNLNTFGPLEVFKFTSYFDEKTIVLQTKSEDKFFLNVEVLLNS
KLFVLVKINGNKKRFHDFLEHFESEQMIRLDDPTSNKMMYPNFSVESVGK
YEVAYTVTDINNSMELRYETFPLDRRITFRRTGKKPPEYVEQFGRYNTES
YLENLKQVKIAMSYDNYLPRFYGNLIIKNPYWTDLQRPNKLNLANENKPG
VRESLRRGLKNFIRSSPSKEDLRIPGIEKPQTIPPPKNVPSPTKQQALAP
RSSSDAPRPTQRTVKKADTNPIYDIDTWKLEQLRQEFAKNKVDGVPIKPP
RRRLPRPKSLDMDHPHSMFYNELKEDNLYEKPFNEKSPHGKLKHVKDQEI
FQYQRSPSLPIRVPLQAERPTQRTHSASPPSFYPPSSSFEGLDSGVDSPS
DNRSLGEMLKRFQTSSPQPQPQQENRTRSHSAMEKRKSLSQLSLSGSDLN
ISYPFNFKHQKGHGIPENLYAIPGQQRSSFNQLDETNQFPDLEQITQNTR
RNTAFRSHIYESVIYADVKNEVKGNPIFAAEVESMNSIKEFTIDDVKELL
TQLKLERHVQTFEDEMVTGYMLVEKFTEFHGEMGLTPFEARKLYKYVRGW
RPTILNSGHENMNFKEWSINEVEAQLIKLKLPMFAIFCSDNLIDGALLLD
MIQNKLLTTLEQDKVTLKKVEIARIEAYFENPQQYEHMRADSNSSNLSA
Run BLAST on NCBI

transcript from alignment at sc0000380:160767..171618+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021250 ID=TCONS_00021250|Name=TCONS_00021250|organism=Clytia hemisphaerica|type=transcript|length=10852bp|location=Sequence derived from alignment at sc0000380:160767..171618+ (Clytia hemisphaerica)
TTATACCTTTCTCTCGTTTACTATTTCTCTTTCAACCTTTTGATTACCTT TGTTGCTAGCCCCACAAAGCAAGAGAAATAGAATTAATAGCTTTGTCAAA ACAATAAGAAAATCCAGCTGCATTTTGAAGGAGAAATTTGGCATGATGAC AAAATACTTTTAACTTTAGCTTGACATCAAATGTTATGAAATAATATCAA ATGGTGTGCAAAAtgtgaaaattgtttttcttatcGTGAAAAAAGTCACG CACTGGCTTTCCTTCTGCGTGACTTGGTTATTGAGCCTTTATTCATATTA AAGAGTTTTTCAGCTATGGTTTTTGAATTAACACTGGCATTGGGTTTGTT GAATTAACATTATAATATTATCATCAATTATTGGTCCATTAGATAAAAGG TAAGATTTTAATTTAGTTTGCATAAAACATTAgtctgggtatccagactc aaaattgtAGAAAAATTACCTCAAAATACAGTTACATAGAACAGTCTGAT ACAGTTACCTTATAACAGCTAGTCacaatggtcaaaattctacaacgaga atcttgttgtgtgccggaaagtcaaaaactaaattcTTCTGATCCGGTGC CCTAGTTTttaacacaatcacgcaacttttgTTGTCATTCACAGTCCTTT TAGATGAGCGCGGCCCTTACAAATTTGaaattgcatattcgtcagattgt tttgttttcacccatccctttagagcttcagcgtgaggggcagaaaacaa tcacaatctgaccTCAGGTTTGCAAGAATAGTTTAGGATCATTACacaca aaaaaataagaatatccaTAACGAAATtgaaaacaccattcttataaaaa aagagtctACCCCGCAGGGGGCANTCAcacgaaaaaataagaatatccaT AACGAAATTGAAAACaccattctcataaaaaaagagtcTACCCCGCCGGT GGCAATGATCTTGACTGCCAACGGGGACATGCTGCTGGAGtatgaaaaat ggaccctgtcagacaTGAATATTTGGCTAATTTGGGACCTTgtcagaaag aaaaatcaaaaaaactttcCCATCTTGACCCTAAAAAGCGGCCAAAATGA CTAAtgtcaaaaattaccaaaagtcaaccctgtcagatacacatcttgaa aattagtataTTTGGGACCCTgacagatatcttcagagcctaaaaaagga acCCAGACTAGCGGCACGTCTCCGTATcctttttgcctaagtgccctcCC TGGGAGTTCACATTGTTTTCGCAGGTTTTTATATACGATCATCCGCCACA TTAGAGTGCCCAAATAATTAATTCGTGTGAATTATTGAGtcttcaaaaga gatttttctgAAGAACGAAGAACAccaaaatattgtaaaaacaaaatggc tgactgCTTGCTTGCATGCGTGCCCGGCATTTTAGTGTTGTTTTAGAAAG TTTTGGCAGTCTCTGCTACTTGATTATGTGCATATTTTGGTTGtttcttt tgagtttttttagtCTTGAAGggttctgtcaacaagggttcactcacaga aagtatcaaacaaactgtatcaTGATCACAAACAAATAGTCAGCTTACAA GCAAAAAACTTGATCATGATACAAGAAGTATCGAAACGTCAAGAATGAAC AGGATTTTGTTTTTCGTCTTTAATTTTTTCCTGAGAATAATTTGGCCCAG AAGAAAATCTTTTCAAGTATACAGTATCTCAATCAAAATTATGACATTTT GTGGAGAATTTGAGCATTGCTGCGAGATAATTGGTAATTTGCAGGTTAAG ATGCTCTAAAAACTGCATGCTTAGGTTCAGTAGCTTAGTTGCTTAGAACC ggattttcttgttttgaaggtTATTTGGACAAATAGATCGAAATTGAATT TTCGTTTTAAGAATGTCTTGAAGGAGTTGATCCAGTAAATTTTGCAATAT TGACTTTCTTTGAGGTTAACTCAAAATGCAGATGAATTGATTTGAATAAC CAAGGAGCTAGCATCGACAAGCAACATTCAAAAGCTTTTGGAAAGTGAAA TCTAGAAAACATTTCTTTACTTTTACCTAATATGGTCTAACAGAGTATAT TGCTTACTTTATCAAATGCATACAGTTCTTAAAGTTACTCACTATATTTT TTCGATCATTTTGTATGCTCATTTACAGCCTCTATTGCTACTGAACTCCC ACTTAAAATTAGTCACTGAATTACTCATGAATGAGCGCTCTTAAGACCAA TTAACAAAAAACGTTATTTGCGATAACATGATAATGTCGAGAAAAACCGT AAAACTTCTTATCTTTCTTGAACTTCCCTCAGAGTGGGTTTTCTCTCTAA TCCTGTGGTTTTATCACTGTCTAAATCAAGTTTCTCTTTTAAAATCGAGT GGGATGCTCCCGTTAGAATATGAACTCAAATTAATCTAGTGCTCTCAATC TttccattttgattttgattttcttttctaacttttgattgagTACTTCG TGGACTTGTTGGGCTCTGTGTATTATAGATCATACTGGCCTTGGGAGAAT GGAGGGTTTTCCGTAGTGAGCGAAAACTTAGCGAAAACTATAATAGCAAC ACATTTTTCATCTCATATGCGCATCatgcttacacgttttttttataaga acgtcaaaaattttcgaagccttcggatgttcttagtttttaggatttga agcctaaaaatgttcttaaaatgttcttattttcagcattttttgagcat ttgatgtaattttttaagaaaatgcatgtttttaagtctccaaagcctta gaatattcttagaatgttcttaaatttttgggcctcgaagccttatgttc ttatatagtttgttcttataaaaaaaaaacgtgtatgcgaTTCTCTTAAA GATACAGAAGAAATTACTCAATCCACCTTTTCGGCCATTGCTGCGTGGGC ATTTTTTtttccgttttaccaccctaaactcgattcaatcctttttttac acttttttcttttgtcttcaggtgcgaaaaaaagactggccccgacaatt ggcggctacggtcaaaaaggtgtattagaatCTTGTAAAATGTGCTACTT TTACACAAGCTTTgacgaaaacaatagaaattgtTTCAATAGGAAGAGTT TCGGTTCGTTGGAAACCAAAAATCtatcttttcactttttaaatggGTTA TTCATTACGGCAGCCGAaagaaaatgttataaaaataaaacttagcTCAG TCAGTCTCGAAAGAGTCGTTTTTGGGAAATTTGAAACACGCATACGTATG TCAGGTTGAGTGTTTTACAAATTGTCTGTAAAATTAATTATCTCAAGCGG TATAGGTTTATTATTGGCCGATTTTCTCAAGTCGATGCGTAATTTAGAAT GGTTTCATATGAACAGGATAATACTCTCAATGACGACAGGTTGTTGTTTC TGGGGGAGAAACACTTGAAAGAATGATGAGATTAGGAAAGGAGTTATCAA TTTATAATGGGCTCTGTTAAAATGTTCGCTGAGTTTTGCCaacaattaat ttcaacttGCTATATTGATATATACTTTGAGGCGCGTCATGATTCATGCA CAGTTGAGTATTTTGGCATCCATATAATATACCACTATTCCCAGTGTGCA CGTATCAACGTCagagttgatgacgtcattcataAAAAGTGATTTAATTG ATGGCTTAATTATACGTTTGAAGTGAATTATGAATGACCCTTTCCTATCT CCATTAATCCTTATCTTCAATATCTCCTTTTAGAAATTCGCgctcatttt ttcatttcaagccaaaactttaaaatttgagTTCCTATTATCAGTCAATA AACGTTTGAAAGAGATGAGCAGTGTTATCAAGACCCTCTGAAGTTAAAGT TAACGTAATATGGGTTATAGTAGATATAGAAATGGTACGGACGCAAGATC AACATTTAGTTCCTGTATTAGAAGAAGCTTAAGGGTAAGCATAATCATTC AATAAATTTGTCAAGAAGGTTGAAGGTTTGAATTTGTGTACCATATTTCA ATTAAGTGTAACGAAGAGAATCGAAGCTACTGTTTAATCTTTGCGCATCG GGTTTTCTTTTTGTATTACCTAAGCTAGAGCCTATCAATCTTTGGTTTTT AGCCAGGTGGTCAAAACATTATCGATCGCCTTAAGACCAGCTTATACGGC AATGTGCGAATGTGTAGCAAAACAAAGAGTTTATTCCAGACAGTCAACTG TTTTTGCAATATTCCCTAATATCTCAAAGTCGATCAACCTTTGAACCCAA CTGGCGTTTTGACTATTAATCCATTGTTCTCAAAACATTCTTATTGGCTA AGAAGTCTTCAAAATAGTGTTTatctctttcatttttctttttttctcat caGGTGACCTGTGCATAAAAAGCTAGCCTGTAGAAGATCTTGACAGACAC TAAGTCATGGCTACTAAGGAAGAGTAGTTTGGTACAGGCTTTGAATTTTG TTGATTATGATTTTCATTATAGACACAAAAGCTCGGGAcaaagctggagt ttttacaagctcttatttgatttggttggtcgttaagatgtaataaaaga atcttattactttttctaaagaacgcgtcatctctatcactttaaatgac caattagtgaagtatcttgtaaaatcTCCAAGGCATCTTAAAAGTTCGCG TGTCCGATGCTCACAGTACCGCTGTAAGATAATAATAAAATCACTCGCTG GTAGGAAGAAAATATTTGTCTCTACATACTGTGTTCTGTTTGAAAGCGAG GCCAGGTGGAgataattttgatgaattaTGTAAATTAATATTCTTACTAT GACCTTTTGTCATGCTCGTCATGAATAATCTCCCTTGTATTTTGTTATGA AACATTCAAAACTGTTTGGAAGCATTATTTGGTTAGAGATGTTGTTTTGA GTAGACCATCTTATTCGAAGTTTGAAGTTTCACAAAATTTCCTCAATCTC GTACACAGAGCCATTTgaaccaactttttttatttcactgaTGATCGTGC TACAACCTTTCATGAGCGTTATCAGAATCGTGAAAAAgtgaactaaggga ctgggttcgtGTTTGAAATCCTCTGTTCTTGTTCAATATTAATCACCTCG TGTCACAAGTTTTTGTTAAGTAATGACGATTTGTCTTTTGCTAATGAGAA TTTCGGTAAACGGTGATTCGCACCCCTATATTAGGTAGAGACCTAATAGT CGTGACCCATATCTGGGTTTTTAAATCTAAGTTGTTGTGGGATGGGAAAC TTCTCTGTTttctattcttataaagaatgcTGTGAGACTGAAACTTTTAG AAGAGATTAGTTCTGTTTTTCGTGGTAACTTTAAGGTGACAATACTCAAG CATAGAGTTTGCTAGAGTAATTCGTATTCAAATCTGAAACCATAGACGGT ATTTGATGAAGGGGTGTTGCATAAGATTCAACATGAAAACGAAGCAGGTA AATCGAAGCTAAAGTTCTTTAAAATCATCGTGGATAATTAGTTATAGTTA GTTTGTATAGAAAGTTTAActtttatctggcacccaggtACAGAAATTTT CAACCGAcatgctaaagctctaaaggtcgGTAAAAGTTTCAACATTAAGG TTAAGATTACGTAACTTTGCAAGACATTGTGAACTTGAaaaggattttgc agcgggaggcctGGACCCTAGCActtgttttcggggattggcgggtccaa ccgaaatagtTTCAGGTTTACGCGCAAAAGTatttgaacccgactgagaa tGTAGCACAAAGAACAACtttcattcctctccgatgggaaattggccccc tcttttagagctttagcgcgGGCTGCCGTCAACTCATCATCGGAATATCA CCATTAAAAGTGAAATATGGTACAATTTATTCGTCAGAGGGGCGAGATTC ATCCTTCAATTTCATCAAAccttcaaattaaataaaagtgaaagtatgaa tcaaaattgaaattcgaAAACCAGCACTACATCCGTCTCATGCTATACCC tgctttttattttgtttatggcTGAAAGTAATACGCCGACCTTTCATTGA ACAAATTGAATGAATCTCTTTGAACATTCTATGCACTGCTTGACATAGCA TAAGCGCTTAGGCTTCCTTCCTTTACTGAGgagtttgattttaaataaat tcacaCGCCTTGTAAATTGCACGCAATCAATCGCGTTTCTTGTCTTGTGT AAAGagttaaaagtaaaaagtaTTCATATAAAAAAGTATTCATTAAGGAA ACTTAACCTTGAAACTTAGTTACGTTTGACACTAATTACGGTACCCCAAT TTTCACTTATCTCTTTTTTttgggagggggggggggggggggaatagaTT GTTAGTCTGGTTAACCAAACCCTAAGTCATAGGCTAAACTATTTCTTTTA CGACTAACAACAATATAGtggcgctttaaagattgaagTTGGTCTTGAAT TTCTGTCGCAACTGTCCATTTTCCAAAGTTGCTATGAAAAGGTTGGAACA GTAGGAGTAGTAAGATTAGCGGTTTGCCCTTATGGTAAATTTCGTAAAAT GTTGTAAAGTTAACGAGATTGTTTCATATAAAGGTCGAAAAAATCGACCA GTTAACCAGACCAAAATGAGCtttctttgaacttgaaaaccCTTTGGATA ATCATCTTTATTGCATTAGTTTAACCCATTACGTAATTGGTTTTATGACT TTAGATTCGAATTATATAATTGGATGAGAGAGAGAGTGACTAATTGCTGA AGGTCTGGTTTACAAACAAAGGTCTATTGACCTGAAAGGGACTTCACCGT GGAGCTTGCAGAATCATTTTGTCTTGTTTTCGTTTCTTATACACgatatc tttttataagaaaaattttatataaaagCACGAAGCTAAAAATTTGCTAA AACCTAAGATTAAATTAAAAACAATTTTAGCCTCAGATTTCAGAAATTAC TAAGGAATTACTGATTTTAACCGATTTTTAAGAGATTTTAAACCCATTTT CAGTTTAAGTAAAGAAACTAAGCGATTTAAGAACATTTCATAGTATCATT TAAATTTCAAAGAATTAAGAACAGTGCCCAGCCTGATCCAAAATCTACTG TTTCTTATAGAAAAGCGTGTAAGGCAAAATATGAAACGTCTTTATTTTCC GTTTATCTGAAGCATAGTTGACAAACTGATGGTGTTTTAAGAATATTCTC GTGCTCTTTTCTCATTTACTATTCTATCTTGTCAATACTTCTTTTGATTT TAATACCCTATTTAAAAACAGACTTTAGGATGCTATAATAGACTTAAATT TGCTTAGTCACTTTGCAAAGAGGATTGATATTGATAATGCTTAGTTAAGC AACATCCTTCGTATTGTCGCATTTCGATTTTGATATTCGTTGGTGCAGGT TGACAATTGATGGAAAAAATATTGCAAGGAAATCTTATTTAGTCACAAAG ATCCTTGCGAGACTATTTCTGTAATTTATTAGTAGTTTCAATCTGCCGAG CTATTATACTAGCTTCTAGTCAGTaataaaaacgtcaaaaatcaaTAATC TAGTCTTAAGCTGtctcaattatttttcattattatttttcatttttttt cagagCAAAACAATGACAGCACCAAGTGAAGAATTATCATTCCATAATGC AATCAACAATCAAAAATTACCCATCGTTCTTCAAGCGACAAAAAGTTGCG TCCTGGGTGAGCGAACCGTTCTGGAGGAAGACCAAATCTTAACTGTCTTG GATCGGGCTCACGTTGATCTTGTGACATGTAAGGACGCTGATGGGAAAAC TTTCAAGATCGCCAAAGATATGGTTTTACATTCTCCAATACATTATGTAG AGGAGTTTTACCCGCGGACCACCCAAGAACTGGAGGAGATGATAGGCAAT GTTAGTTATGTTCAAACTAAGAGCTTTTATAAAGACAACTTGAATACCTT TGGTCCTTTGGAAGTGTTCAAATTCACTAgctattttgatgaaaagacCA TCGTTTTACAGACCAAATCTGAAGATAAGTTTTTCCTGAATGTAGAAGTC TTGTTGAATTCCAAACTCTTCGTCCTGGTCAAGATTAATGGAAACAAGAA AAGATTCCATGACTTTTTGGAGCATTTTGAATCTGAACAGATGATTCGAT TGGATGATCCTACCTCCAATAAAATGATGTATCCAAACTTTTCCGTCGAA TCAGTCGGTAAATACGAAGTCGCTTACACAGTTACTGATATCAATAATTC GATGGAACTCAGATACGAGACGTTCCCACTTGATCGACGTATCACGTTCC GGCGAACCGGCAAGAAGCCACCAGAATATGTCGAACAATTTGGGCGCTAC AATACTGAATCTTACCTGGAGAATCTGAAACAAGTCAAGATCGCAATGAG CTATGACAATTATTTACCACGTTTCTATGGTAATCTGATCATTAAGAATC CATACTGGACTGATTTACAGCGTCCGAATAAGCTAAACCTGGCCAACGAA AACAAACCAGGCGTCCGAGAATCACTTCGCAGAGGACTCAAAAATTTCAT TCGCTCTTCGCCATCCAAAGAAGATCTCCGAATTCCCGGTATCGAGAAAC CGCAAACCATACCTCCTCCCAAGAATGTTCCATCTCCAACCAAACAACAA GCCCTCGCTCCAAGGAGCAGCTCAGACGCACCGCGCCCTACTCAAAGAAC TGTTAAGAAGGCTGACACTAACCCAATCTACGATATCGATACTTGGAAGC TAGAGCAGCTCAGACAGGAATTTGCCAAGAATAAAGTTGACGGAGTACCC ATCAAACCTCCGAGAAGAAGATTGCCGAGACCGAAATCGTTAGATATGGA TCATCCACACAGTATGTTTTATAACGAGCTGAAAGAAGATAATCTCTACG AGAAACCTTTCAACGAGAAATCACCACACGGTAAACTTAAGCACGTCAAA GATCAAGAAATCTTTCAATATCAACGAAGTCCCTCTTTACCGATCCGCGT CCCACTTCAAGCCGAACGCCCCACTCAACGCACCCATTCCGCCTCTCCGC CCTCATTTTATCCGCCCTCGTCTTCGTTTGAAGGATTAGATTCAGGAGTG GACTCACCTAGTGATAACAGAAGCCTTGGTGAGAtgctcaaaagatttca aaccTCTTCGCCACAACCTCAACCACAACAAGAGAATCGAACACGTTCAC ACAGTGCTATGGAAAAACGCAAATCACTTTCACAATTATCCCTCTCTGGA TCCGACCTCAACATTTCATACCCTTTcaatttcaaacatcaaaaaggGCA TGGTATTCCTGAGAACCTCTACGCAATACCAGGTCAACAAAGGTCAAGTT TCAACCAACTCGACGAAACCAATCAATTTCCAGATCTTGAGCAAATAACA CAGAACACAAGACGAAACACCGCTTTCAGAAGCCATATCTATGAATCTGT CATTTATGCTGACGTCAAAAATGAGGTTAAAGGCAATCCAATCTTTGCTG CTGAAGTAGAAAGCATGAACTCTATCAAAGAATTTACTATCGACGATGTG AAGGAATTATTGACTCAATTAAAACTTGAGAGACATGTGCAAACGTTTGA GGATGAGATGGTCACAGGTTATATGCTTGTTGAAAAATTCACAGAATTTC ACGGAGAAATGGGACTTACTCCTTTTGAGGCtcgaaaactttacaaatat gtTCGTGGCTGGAGACCGACGATTCTTAATTCAGGACACGAGAATATGAA CTTCAAAGAATGGTCGATTAATGAAGTCGAAGCGCAACTTATTAAACTAA AACTACCAATGTTTGCAATTTTTTGTTCAGATAATCTTATTGATGGTGCT CTGTTGTTAGATATGATTCAAAACAAATTACTGACAACTTTGGAGCAGGA TAAAGTGAcattaaagaaagttgagattGCAAGGATCGaagcttattttg aaaatccTCAACAGTATGAACATATGAGGGCCGATAGTAATTCAAGCAAC TTAAGTGCTTGATTTAACGAAAACTGTCACCAAAAAAGAGAACTcgaagt tttagtttttttacatacgtaatattttttattaagtttcatttttcgTA AACCATAAAAATTAGTTTGCTTAATTGAGTATCTAACTATTAATTATGGT GTATgtgggtgtttttttttaatctcagtcgaaaaaatatttacacTTAT TTTGATATCTTTTCCAAAGATGACTGGATTGACTGCTTTTAAAAACTAGT TCAAAATAAGTCTAGCTTACTTTAATTTAAAAGGTAAAGGTATTCCATTT GAAATCTCGATCAATTGAGTATTTAAAATCGTTAAATACCTATTAATAAA AGCTCTCTTGTGTACGTGTGGgtagatgtttttattttccatccaatttt attttatttaaagaTACAAAGTTAGATAATATAAAGACCGTCTAAAATCT CACACAAACAAGTACTAGTAGGGTATTTATTAAGATGTTGACACGCCTAT TTTGCCCCCGCCTGGCTCTAAATAACCTTTGCATAAAGCTTTCAGTTGAG GTTTCAGCCTGCTTCTAAAAGTTGTATTAGAATGTGAAATAACATCgaac ttttgaaaagttttatttctagAAATTAAAAACTCTGTTTAGGTATTACC CCCTTTTCTATCTTTACCtcgagtgacgtcaaaaaaagataatttatgtt aatttatcccattaaaatttatttttcatttatttttcttttgtaagtat ttttcttttcaacatTTCACAatagttgaaaaaaaaagtatttaaagTAC CA

Coding sequence (CDS) from alignment at sc0000380:160767..171618+

>TCONS_00021250 ID=TCONS_00021250|Name=TCONS_00021250|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at sc0000380:160767..171618+ (Clytia hemisphaerica)
ATGACAGCACCAAGTGAAGAATTATCATTCCATAATGCAATCAACAATCA
AAAATTACCCATCGTTCTTCAAGCGACAAAAAGTTGCGTCCTGGGTGAGC
GAACCGTTCTGGAGGAAGACCAAATCTTAACTGTCTTGGATCGGGCTCAC
GTTGATCTTGTGACATGTAAGGACGCTGATGGGAAAACTTTCAAGATCGC
CAAAGATATGGTTTTACATTCTCCAATACATTATGTAGAGGAGTTTTACC
CGCGGACCACCCAAGAACTGGAGGAGATGATAGGCAATGTTAGTTATGTT
CAAACTAAGAGCTTTTATAAAGACAACTTGAATACCTTTGGTCCTTTGGA
AGTGTTCAAATTCACTAgctattttgatgaaaagacCATCGTTTTACAGA
CCAAATCTGAAGATAAGTTTTTCCTGAATGTAGAAGTCTTGTTGAATTCC
AAACTCTTCGTCCTGGTCAAGATTAATGGAAACAAGAAAAGATTCCATGA
CTTTTTGGAGCATTTTGAATCTGAACAGATGATTCGATTGGATGATCCTA
CCTCCAATAAAATGATGTATCCAAACTTTTCCGTCGAATCAGTCGGTAAA
TACGAAGTCGCTTACACAGTTACTGATATCAATAATTCGATGGAACTCAG
ATACGAGACGTTCCCACTTGATCGACGTATCACGTTCCGGCGAACCGGCA
AGAAGCCACCAGAATATGTCGAACAATTTGGGCGCTACAATACTGAATCT
TACCTGGAGAATCTGAAACAAGTCAAGATCGCAATGAGCTATGACAATTA
TTTACCACGTTTCTATGGTAATCTGATCATTAAGAATCCATACTGGACTG
ATTTACAGCGTCCGAATAAGCTAAACCTGGCCAACGAAAACAAACCAGGC
GTCCGAGAATCACTTCGCAGAGGACTCAAAAATTTCATTCGCTCTTCGCC
ATCCAAAGAAGATCTCCGAATTCCCGGTATCGAGAAACCGCAAACCATAC
CTCCTCCCAAGAATGTTCCATCTCCAACCAAACAACAAGCCCTCGCTCCA
AGGAGCAGCTCAGACGCACCGCGCCCTACTCAAAGAACTGTTAAGAAGGC
TGACACTAACCCAATCTACGATATCGATACTTGGAAGCTAGAGCAGCTCA
GACAGGAATTTGCCAAGAATAAAGTTGACGGAGTACCCATCAAACCTCCG
AGAAGAAGATTGCCGAGACCGAAATCGTTAGATATGGATCATCCACACAG
TATGTTTTATAACGAGCTGAAAGAAGATAATCTCTACGAGAAACCTTTCA
ACGAGAAATCACCACACGGTAAACTTAAGCACGTCAAAGATCAAGAAATC
TTTCAATATCAACGAAGTCCCTCTTTACCGATCCGCGTCCCACTTCAAGC
CGAACGCCCCACTCAACGCACCCATTCCGCCTCTCCGCCCTCATTTTATC
CGCCCTCGTCTTCGTTTGAAGGATTAGATTCAGGAGTGGACTCACCTAGT
GATAACAGAAGCCTTGGTGAGAtgctcaaaagatttcaaaccTCTTCGCC
ACAACCTCAACCACAACAAGAGAATCGAACACGTTCACACAGTGCTATGG
AAAAACGCAAATCACTTTCACAATTATCCCTCTCTGGATCCGACCTCAAC
ATTTCATACCCTTTcaatttcaaacatcaaaaaggGCATGGTATTCCTGA
GAACCTCTACGCAATACCAGGTCAACAAAGGTCAAGTTTCAACCAACTCG
ACGAAACCAATCAATTTCCAGATCTTGAGCAAATAACACAGAACACAAGA
CGAAACACCGCTTTCAGAAGCCATATCTATGAATCTGTCATTTATGCTGA
CGTCAAAAATGAGGTTAAAGGCAATCCAATCTTTGCTGCTGAAGTAGAAA
GCATGAACTCTATCAAAGAATTTACTATCGACGATGTGAAGGAATTATTG
ACTCAATTAAAACTTGAGAGACATGTGCAAACGTTTGAGGATGAGATGGT
CACAGGTTATATGCTTGTTGAAAAATTCACAGAATTTCACGGAGAAATGG
GACTTACTCCTTTTGAGGCtcgaaaactttacaaatatgtTCGTGGCTGG
AGACCGACGATTCTTAATTCAGGACACGAGAATATGAACTTCAAAGAATG
GTCGATTAATGAAGTCGAAGCGCAACTTATTAAACTAAAACTACCAATGT
TTGCAATTTTTTGTTCAGATAATCTTATTGATGGTGCTCTGTTGTTAGAT
ATGATTCAAAACAAATTACTGACAACTTTGGAGCAGGATAAAGTGAcatt
aaagaaagttgagattGCAAGGATCGaagcttattttgaaaatccTCAAC
AGTATGAACATATGAGGGCCGATAGTAATTCAAGCAACTTAAGTGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011897XLOC_011897Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021250-proteinTCONS_00021250-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021250-exon-sc0000380-1491911889:160767..161165TCONS_00021250-exon-sc0000380-1491911889:160767..161165Clytia hemisphaericaexon
TCONS_00021250-exon-sc0000380-1510915933:160767..161165TCONS_00021250-exon-sc0000380-1510915933:160767..161165Clytia hemisphaericaexon
TCONS_00021250-exon-sc0000380-1575043694:160767..161165TCONS_00021250-exon-sc0000380-1575043694:160767..161165Clytia hemisphaericaexon
TCONS_00021250-exon-sc0000380-1491911889:168420..171618TCONS_00021250-exon-sc0000380-1491911889:168420..171618Clytia hemisphaericaexon
TCONS_00021250-exon-sc0000380-1510915933:168420..171618TCONS_00021250-exon-sc0000380-1510915933:168420..171618Clytia hemisphaericaexon
TCONS_00021250-exon-sc0000380-1575043694:168420..171618TCONS_00021250-exon-sc0000380-1575043694:168420..171618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:160767..171618 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.69435 5.92089 5.33384 4.52255 54.7753 39.257 62.1129 67.864 39.1238 61.6719 21.9438 45.9592 22.0565 21.3875 0.0951098 0.0829297 9.00603 11.3735 39.2493 40.5825 23.8261 25.8596 25.1462 29.9765 24.817 25.5892 35.8573 28.6166 4.93817 6.65304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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