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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021249 ID=TCONS_00021249|Name=TCONS_00021249|organism=Clytia hemisphaerica|type=transcript|length=1156bp
GGGGCCGAAAAGTCTTTTGACAaatacaaagattttgaaatcgATGTTTT
GGAAACTCCTTTTGACAAGCAAAGTGTGATGCACTATTCAAACTTTGCAT
TCACCAATAAGAATCCTTTTGATGGTGAATCAGCAATGACTTTGATCAGT
AAAGGACCATTGGGTGCAAATGAAGTTCTTGGGAACTCAGAGGGGTTGAG
TTCTCTTGATATACAGCGTATCGACACCAGataCTGCCAAGGTGTTACAG
CGCAAACTAAAACTCCAACACAAACTCCACCAGTGACTGAACAGCAGACA
GAAAACCCTGAAACAACCACCACCGAAGATCCACAAGTTACCACCAATCC
TGTTACCAAAAATCCCTTGACTGAAAACCCCGTTACTGATGGCGTCACAA
TGGAACCTTTGACTGAGACACCGGAGCCGTTGACCAAAACAGCCGGACCA
ACTGAAATTCCGCCTAAAACATCTTGTCCTACAAAACGACCCAAAGAAAA
GCGATGGAAAAAGAAAGGCTCGTGGTGGAAACGTATAACTCGTAAATGGT
GGCAAGGGCGAGGGCGTGGTGGGCGTAAACGTGTgtatcaaaaagtttca
agaaagGGCGGCTCAAGACGTGTAATCGGGCGTCatgtaaagaatttttt
taagaaagcaatatttggaaaataaattttgagaagaAGATTGATTAATG
TATTGCACCATTTTTAGTAAGAATTGCACCTTTTTGCACTTTACTTTTTA
TATGCACTTCCACAAGTGGCATATTCTTTCATATATTTAAAAGATTGCAG
TTTTTGGGAGTGTCAAAAACACTGCATTTACAAATGGAACCTTCTTCGCA
TTGTTGGAATCAGTCAAAAGTTCTTTTTCAGCATTTCTGATTTCCTACCG
GATTTTTGAGCTATAagtaatgaaatttaaaaagtaaccCTGACTTAACT
TAACCCCGAAACCCCCGAATTCCCTATTCTATCGTATCTACCTATAAACG
CATTTTATCCCagaattttcataaaatcaGTGGAACAGGGGTGGTGCTAC
TAAAAAACGTATATGACGTCTAAAGTAGTTCAAGTTATTATAGATTACGA
GACCAACGGGACTTTCGGATTCTCATTTAGTGTGATAAATATACTGAATT
TTTACG Run BLAST on NCBI protein sequence of TCONS_00021249-protein >TCONS_00021249-protein ID=TCONS_00021249-protein|Name=TCONS_00021249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
GAEKSFDKYKDFEIDVLETPFDKQSVMHYSNFAFTNKNPFDGESAMTLIS
KGPLGANEVLGNSEGLSSLDIQRIDTRYCQGVTAQTKTPTQTPPVTEQQT
ENPETTTTEDPQVTTNPVTKNPLTENPVTDGVTMEPLTETPEPLTKTAGP
TEIPPKTSCPTKRPKEKRWKKKGSWWKRITRKWWQGRGRGGRKRVYQKVS
RKGGSRRVIGRHVKNFFKKAIFGK Run BLAST on NCBI transcript from alignment at sc0000380:157368..159439+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021249 ID=TCONS_00021249|Name=TCONS_00021249|organism=Clytia hemisphaerica|type=transcript|length=2072bp|location=Sequence derived from alignment at sc0000380:157368..159439+ (Clytia hemisphaerica)
GGGGCCGAAAAGTCTTTTGACAaatacaaagattttgaaatcgATGTTTT
GGAAACTCCTTTTGACAAGCAAAGTGTGATGCACTATTCAAAGTGAGTGA
TTTGGCACGTGtgtaatttggctaaaattttgtaCTGTTACGTTGTAAAA
AGATGATTcattaatataatttttgaacaataaactacTTTCAGGGGGTA
AACCCTTGAGTATCACAGTGTAAATATTACACTGTGACGACAAATCAAGA
ATCTATTTATAAGCACGTTCAATAAATACAATAGGTTATGTGCTTTCAAT
cttcgattctttgaaaagtaatACGATACTCGATAAAATTCTGTCTCTAT
AGGTTAAGTTTTAGAGAAATCTAAAATGTTCTCTCACGGTATCTAAATTT
CCCGTAAATAAAGGATCTTGTAGAAACATTTATAGTTTGTGGTTGACCAA
TGTTCAAGGCCGTTATTGTAATAAACTGACAGCTCCTAGTCCAAAGTCCT
GCTCTTTCTGTATTTCGTTCAGTTCAAACCCAGGGGAAGGGTagaaatgg
gtgccgggtatgtgcgagccgggtccctttttcacaccctcgaaagtctc
tcaaaggagtacaaaaaccattaaaaagagAATTGAGTCTCTGCAAGAGT
CCAAAAATCTCTCGAAGGGTcgtgatttttccaaaatttggacaaaaatc
gagtgaaaatcgNGGTCCAAAAATCTCTCGAAGGGTCGTgtccaaaattt
ggacaaaaattgaGTGAAAATCGATAAAAGATTTGAGAAAAGTCTCTCAT
AGGGTCCCAAAAACaccaattttttacaatgactttgttttcaattcttt
cCAGCTTTGCATTCACCAATAAGAATCCTTTTGATGGTGAATCAGCAATG
ACTTTGATCAGTAAAGGACCATTGGGTGCAAATGAAGTTCTTGGGAACTC
AGAGGGGTTGAGTTCTCTTGATATACAGCGTATCGACACCAGGTATGTTT
TACACTAAGCATGTAGGTAAATTTTAATAGCGTTGATTAGTAGTTGATAA
TTGAAATATCTCGAATTGTGCTCGACTTTGATCCATTGATGTTCGTTTCC
ATTCGGTTCCTTTGGAAATAAATCCCacctttaaactttttttaagataC
TGCCAAGGTGTTACAGCGCAAACTAAAACTCCAACACAAACTCCACCAGT
GACTGAACAGCAGACAGAAAACCCTGAAACAACCACCACCGAAGATCCAC
AAGTTACCACCAATCCTGTTACCAAAAATCCCTTGACTGAAAACCCCGTT
ACTGATGGCGTCACAATGGAACCTTTGACTGAGACACCGGAGCCGTTGAC
CAAAACAGCCGGACCAACTGAAATTCCGCCTAAAACATCTTGTCCTACAA
AACGACCCAAAGAAAAGCGATGGAAAAAGAAAGGCTCGTGGTGGAAACGT
ATAACTCGTAAATGGTGGCAAGGGCGAGGGCGTGGTGGGCGTAAACGTGT
gtatcaaaaagtttcaagaaagGGCGGCTCAAGACGTGTAATCGGGCGTC
atgtaaagaatttttttaagaaagcaatatttggaaaataaattttgaga
agaAGATTGATTAATGTATTGCACCATTTTTAGTAAGAATTGCACCTTTT
TGCACTTTACTTTTTATATGCACTTCCACAAGTGGCATATTCTTTCATAT
ATTTAAAAGATTGCAGTTTTTGGGAGTGTCAAAAACACTGCATTTACAAA
TGGAACCTTCTTCGCATTGTTGGAATCAGTCAAAAGTTCTTTTTCAGCAT
TTCTGATTTCCTACCGGATTTTTGAGCTATAagtaatgaaatttaaaaag
taaccCTGACTTAACTTAACCCCGAAACCCCCGAATTCCCTATTCTATCG
TATCTACCTATAAACGCATTTTATCCCagaattttcataaaatcaGTGGA
ACAGGGGTGGTGCTACTAAAAAACGTATATGACGTCTAAAGTAGTTCAAG
TTATTATAGATTACGAGACCAACGGGACTTTCGGATTCTCATTTAGTGTG
ATAAATATACTGAATTTTTACG Coding sequence (CDS) from alignment at sc0000380:157368..159439+ >TCONS_00021249 ID=TCONS_00021249|Name=TCONS_00021249|organism=Clytia hemisphaerica|type=CDS|length=2025bp|location=Sequence derived from alignment at sc0000380:157368..159439+ (Clytia hemisphaerica)
GGGGCCGAAAAGTCTTTTGACAaatacaaagattttgaaatcgATGTTTT
GGAAACTCCTTTTGACAAGCAAAGTGTGATGCACTATTCAAACTTTGCAT
TCACCAATAAGAATCCTTTTGATGGTGAATCAGCAATGACTTTGATCAGT
AAAGGACCATTGGGTGCAAATGAAGTTCTTGGGAACTCAGAGGGGTTGAG
TTCTCTTGATATACAGCGTATCGACACCAGataCTGCCAAGGTGTTACAG
CGCAAACTAAAACTCCAACACAAACTCCACCAGTGACTGAACAGCAGACA
GAAAACCCTGAAACAACCACCACCGAAGATCCACAAGTTACCACCAATCC
TGTTACCAAAAATCCCTTGACTGAAAACCCCGTTACTGATGGCGTCACAA
TGGAACCTTTGACTGAGACACCGGAGCCGTTGACCAAAACAGCCGGACCA
ACTGAAATTCCGCCTAAAACATCTTGTCCTACAAAACGACCCAAAGAAAA
GCGATGGAAAAAGAAAGGCTCGTGGTGGAAACGTATAACTCGTAAATGGT
GGCAAGGGCGAGGGCGTGGTGGGCGTAAACGTGTgtatcaaaaagtttca
agaaagGGCGGCTCAAGACGTGTAATCGGGCGTCatgtaaagaatttttt
taagaaagcaatatttggaaaataaGGGGCCGAAAAGTCTTTTGACAaat
acaaagattttgaaatcgATGTTTTGGAAACTCCTTTTGACAAGCAAAGT
GTGATGCACTATTCAAACTTTGCATTCACCAATAAGAATCCTTTTGATGG
TGAATCAGCAATGACTTTGATCAGTAAAGGACCATTGGGTGCAAATGAAG
TTCTTGGGAACTCAGAGGGGTTGAGTTCTCTTGATATACAGCGTATCGAC
ACCAGataCTGCCAAGGTGTTACAGCGCAAACTAAAACTCCAACACAAAC
TCCACCAGTGACTGAACAGCAGACAGAAAACCCTGAAACAACCACCACCG
AAGATCCACAAGTTACCACCAATCCTGTTACCAAAAATCCCTTGACTGAA
AACCCCGTTACTGATGGCGTCACAATGGAACCTTTGACTGAGACACCGGA
GCCGTTGACCAAAACAGCCGGACCAACTGAAATTCCGCCTAAAACATCTT
GTCCTACAAAACGACCCAAAGAAAAGCGATGGAAAAAGAAAGGCTCGTGG
TGGAAACGTATAACTCGTAAATGGTGGCAAGGGCGAGGGCGTGGTGGGCG
TAAACGTGTgtatcaaaaagtttcaagaaagGGCGGCTCAAGACGTGTAA
TCGGGCGTCatgtaaagaatttttttaagaaagcaatatttggaaaataa
GGGGCCGAAAAGTCTTTTGACAaatacaaagattttgaaatcgATGTTTT
GGAAACTCCTTTTGACAAGCAAAGTGTGATGCACTATTCAAACTTTGCAT
TCACCAATAAGAATCCTTTTGATGGTGAATCAGCAATGACTTTGATCAGT
AAAGGACCATTGGGTGCAAATGAAGTTCTTGGGAACTCAGAGGGGTTGAG
TTCTCTTGATATACAGCGTATCGACACCAGataCTGCCAAGGTGTTACAG
CGCAAACTAAAACTCCAACACAAACTCCACCAGTGACTGAACAGCAGACA
GAAAACCCTGAAACAACCACCACCGAAGATCCACAAGTTACCACCAATCC
TGTTACCAAAAATCCCTTGACTGAAAACCCCGTTACTGATGGCGTCACAA
TGGAACCTTTGACTGAGACACCGGAGCCGTTGACCAAAACAGCCGGACCA
ACTGAAATTCCGCCTAAAACATCTTGTCCTACAAAACGACCCAAAGAAAA
GCGATGGAAAAAGAAAGGCTCGTGGTGGAAACGTATAACTCGTAAATGGT
GGCAAGGGCGAGGGCGTGGTGGGCGTAAACGTGTgtatcaaaaagtttca
agaaagGGCGGCTCAAGACGTGTAATCGGGCGTCatgtaaagaatttttt
taagaaagcaatatttggaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021249-exon-sc0000380-1491911889:157368..157459 | TCONS_00021249-exon-sc0000380-1491911889:157368..157459 | Clytia hemisphaerica | exon |
| TCONS_00021249-exon-sc0000380-1510915933:157368..157459 | TCONS_00021249-exon-sc0000380-1510915933:157368..157459 | Clytia hemisphaerica | exon |
| TCONS_00021249-exon-sc0000380-1575043694:157368..157459 | TCONS_00021249-exon-sc0000380-1575043694:157368..157459 | Clytia hemisphaerica | exon |
| TCONS_00021249-exon-sc0000380-1491911889:158222..158359 | TCONS_00021249-exon-sc0000380-1491911889:158222..158359 | Clytia hemisphaerica | exon |
| TCONS_00021249-exon-sc0000380-1510915933:158222..158359 | TCONS_00021249-exon-sc0000380-1510915933:158222..158359 | Clytia hemisphaerica | exon |
| TCONS_00021249-exon-sc0000380-1575043694:158222..158359 | TCONS_00021249-exon-sc0000380-1575043694:158222..158359 | Clytia hemisphaerica | exon |
| TCONS_00021249-exon-sc0000380-1491911889:158514..159439 | TCONS_00021249-exon-sc0000380-1491911889:158514..159439 | Clytia hemisphaerica | exon |
| TCONS_00021249-exon-sc0000380-1510915933:158514..159439 | TCONS_00021249-exon-sc0000380-1510915933:158514..159439 | Clytia hemisphaerica | exon |
| TCONS_00021249-exon-sc0000380-1575043694:158514..159439 | TCONS_00021249-exon-sc0000380-1575043694:158514..159439 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000380 | supercontig | sc0000380:157368..159439 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004222 | metalloendopeptidase activity |
| GO:0008237 | metallopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
Blast
The following BLAST results are available for this feature:
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