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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021245 ID=TCONS_00021245|Name=TCONS_00021245|organism=Clytia hemisphaerica|type=transcript|length=2733bp
CTAGAATCCAACTTAGCTCAAACCTTAATTATTGGGAGAAACCATTTTAA
CATGTATAGCCTCGAGAGAAGGCGTGGAAGATATATTAAACTATAGGGTG
TCAGTACACTTTCTACTAGtagaatatattttcaaaaaaaagacaaagtt
tcttttttacACGCAATGGTTACTAAAACTTAATTATTTATACATACAAC
ATGAACATTATACAACAATTGAACAATGAATTacacaaaaatgcaaaaaa
ttataAACTCTAATTGACATATTACCTTAATGCAACATTGGAATAATCTG
AAGATTGTTCTAAAGTAATTAGTTATTCTCCCTTTTAGGATTGGCCTGAC
ACAGGACTTTTTTGGGATGCTCTGTATGTAATTTAAAATCCTGACACCCT
GTAGGCATGGTGTATACTTGAGCTGTTTGTGACCAGCTTTCGGCCCGCTA
GACTGTTTGGGCTGTATTAAAGGCCAATAAAAGTCTGCTTCAGAGATTGG
CTCATTGAAGCAGCCTTTGCGAATATATAAACTGGCCAAGTTACCGGTTA
ACTGTTTTTTCCTGGCAGCTTTTAGTCTGTTTTCGTTTGTTCGGATTCAT
GTATGACAACAAGAAGTTTTATTACATATCTGATATTATTATTCATGGCC
AAGATTATTGTTATTCATGGTCAAGAATATTGACATTCGAATGTGAACCA
TAACATTctcttcaaaatatttctttacctGGCAGTCAAAGAGGAgaaat
ctttttcaatcaatGATTCCAACCTCCCTCTTATTCCtgttaccagtgga
taccccttaaaacctataACAAAAAAAGGTACCCCCTATATTCTGATAGA
AAAAACAGTAAGGGCTAAAACTTTTTCTAGTGAGTCTAGGCTACCTATGA
ATTTCTTCCCTGGGtatgtttttttgcaaaagctgctaagaaaattttta
ttgcttcgtgaaaaaattgcaattttagctatttaccccttcaaacctac
aaaatggttttcttgaataacttttcataaaatagtccttttggtctcaa
attttgaacagtgactCACAGCAAAGTTACTAATGCTACAATTAGATCAT
TGGTACTTaagtattttcaaaactgtacgttaaaatcaaattacacctta
aaacctacactattacaccttaaaacctacaaacattgaccccttgctca
caacttattgaaactgtgaaattgcaattcagTGCTGAATGgtgattcaa
ttgatcaaatacttgctagaaatccattcccaaaataatatttgtatttt
tcaggatttcatgcccataatgcaatcGCGCCTGtctttttgtcaaaaaa
ggtgtttgaagggtcaaaacttttattcactTCATTTTTGACGCATGTtg
ctaatgtttttctaaatctccatcaaatttgtgatattTTGATATGCAAT
ATGACCAAGTtttgagaaagttgattttcagattttattggccactacca
taaatgagctttaaaatagaactttgagggcCTTGCGATTTCTTTCGGGT
GTAACCACGGaggataaaataattttttcgtaCCTACCGTAAGTATAAGT
ACCTAAAAAGTATTTTACGAGCTTAAATTTATTTGTGTAATCTCTACgtc
cgaaaaacttgattttttgaagggatttttgataaaattttcaataactt
cgaattttacgacactttgtgataattaaaattcttgCAATTAGGTATTG
TGACCCTCCAAGCGATATCAAAGACACAAAATTTAAGCCGGCAATAATCT
GGTGTCGTTTTTGCCGTCAATCAAGCGCCTAATTTTCGGAGTTCCCCGGT
TTAGATTTAGTCATTGCCGGCAGATTGCCGCTAGATGTAGACTGGGAATC
ATGCGGCAATTTGCCGGCTTTGTACACCCTTCCACAGATATATATTCAGG
CAGGACTGGTAGCCCACAGATTTCTGGCTACAGTAAGCGGCAATTTCCCC
GCTTCGTACACCCTTCCCAAAAAGCATTCTGGACTCATAGCCGGCAGATT
TCCCGCTAAGCGGCAATTTGGCGACTTTTTACACTCTTCCTAAAAAAACC
TGCTGAACTGGACAGCCGACAAATTTGTGGCTAAGCACAACAAAAAAAAT
GCTAGATTTTTATCAACTGTTATCTTGCCGGATGAAATTCGGAAATGAAC
GGACGATACTCGAGTGCTGCCGGCAATGTGGCAGAACATTTTTCGATGCT
TGCGGGAAAGATTTCTATGTATTTAAAATTGCTTGGAGGATCACATATTA
GAGATGGTAAAAAAGTaattatacaatattaaatTGAGTTTGGTGGTTAA
GAGAGCCTAAAACCCAACTTTGTAGGgttaaggggtatgtggttttaagg
ggtatccactggtataaAGAAGCGTGtcagaattagatgagggatgttga
cattagaccaacttacagtatatAAGAGTTAGAAACAATGGGAGGCAGTG
tgcaacatgaaaaatatgtttgGAACTTGCCATGCCTTTGACAGTAAAAC
TTTTAGACCTTGTGCTATtcaggatgtcatgttgaataaaaaACTTCAGC
ATCTAAACAACGATAAGAAAAAATCAATGCACATTTATAATAATTATGTA
TTAACTTGTTTTAATGCTGGGAGTTTTTATCATTCAACATaactatctat
ctatctatctatatattccATACTGAAAGGTCC Run BLAST on NCBI transcript from alignment at sc0000379:444651..447383 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021245 ID=TCONS_00021245|Name=TCONS_00021245|organism=Clytia hemisphaerica|type=transcript|length=2733bp|location=Sequence derived from alignment at sc0000379:444651..447383 (Clytia hemisphaerica)
GGACCTTTCAGTATggaatatatagatagatagatagatagttATGTTGA
ATGATAAAAACTCCCAGCATTAAAACAAGTTAATACATAATTATTATAAA
TGTGCATTGATTTTTTCTTATCGTTGTTTAGATGCTGAAGTtttttattc
aacatgacatcctgaATAGCACAAGGTCTAAAAGTTTTACTGTCAAAGGC
ATGGCAAGTTCcaaacatatttttcatgttgcaCACTGCCTCCCATTGTT
TCTAACTCTTatatactgtaagttggtctaatgtcaacatccctcatcta
attctgaCACGCTTCTttataccagtggataccccttaaaaccacatacc
ccttaacCCTACAAAGTTGGGTTTTAGGCTCTCTTAACCACCAAACTCAa
tttaatattgtataattACTTTTTTACCATCTCTAATATGTGATCCTCCA
AGCAATTTTAAATACATAGAAATCTTTCCCGCAAGCATCGAAAAATGTTC
TGCCACATTGCCGGCAGCACTCGAGTATCGTCCGTTCATTTCCGAATTTC
ATCCGGCAAGATAACAGTTGATAAAAATCTAGCATTTTTTTTGTTGTGCT
TAGCCACAAATTTGTCGGCTGTCCAGTTCAGCAGGTTTTTTTAGGAAGAG
TGTAAAAAGTCGCCAAATTGCCGCTTAGCGGGAAATCTGCCGGCTATGAG
TCCAGAATGCTTTTTGGGAAGGGTGTACGAAGCGGGGAAATTGCCGCTTA
CTGTAGCCAGAAATCTGTGGGCTACCAGTCCTGCCTGAATATATATCTGT
GGAAGGGTGTACAAAGCCGGCAAATTGCCGCATGATTCCCAGTCTACATC
TAGCGGCAATCTGCCGGCAATGACTAAATCTAAACCGGGGAACTCCGAAA
ATTAGGCGCTTGATTGACGGCAAAAACGACACCAGATTATTGCCGGCTTA
AATTTTGTGTCTTTGATATCGCTTGGAGGGTCACAATACCTAATTGcaag
aattttaattatcacaaagtgtcgtaaaattcgaagttattgaaaatttt
atcaaaaatcccttcaaaaaatcaagtttttcggacGTAGAGATTACACA
AATAAATTTAAGCTCGTAAAATACTTTTTAGGTACTTATACTTACGGTAG
GtacgaaaaaattattttatcctCCGTGGTTACACCCGAAAGAAATCGCA
AGgccctcaaagttctattttaaagctcatttatggtagtggccaataaa
atctgaaaatcaactttctcaaaACTTGGTCATATTGCATATCAAaatat
cacaaatttgatggagatttagaaaaacattagcaACATGCGTCAAAAAT
GAagtgaataaaagttttgacccttcaaacaccttttttgacaaaaagaC
AGGCGCgattgcattatgggcatgaaatcctgaaaaatacaaatattatt
ttgggaatggatttctagcaagtatttgatcaattgaatcacCATTCAGC
Actgaattgcaatttcacagtttcaataagttgtgagcaaggggtcaatg
tttgtaggttttaaggtgtaatagtgtaggttttaaggtgtaatttgatt
ttaacgtacagttttgaaaatacttAAGTACCAATGATCTAATTGTAGCA
TTAGTAACTTTGCTGTGagtcactgttcaaaatttgagaccaaaaggact
attttatgaaaagttattcaagaaaaccattttgtaggtttgaaggggta
aatagctaaaattgcaattttttcacgaagcaataaaaattttcttagca
gcttttgcaaaaaaacataCCCAGGGAAGAAATTCATAGGTAGCCTAGAC
TCACTAGAAAAAGTTTTAGCCCTTACTGTTTTTTCTATCAGAATATAGGG
GGTACCTTTTTTTGTtataggttttaaggggtatccactggtaacaGGAA
TAAGAGGGAGGTTGGAATCattgattgaaaaagatttcTCCTCTTTGACT
GCCaggtaaagaaatattttgaagagAATGTTATGGTTCACATTCGAATG
TCAATATTCTTGACCATGAATAACAATAATCTTGGCCATGAATAATAATA
TCAGATATGTAATAAAACTTCTTGTTGTCATACATGAATCCGAACAAACG
AAAACAGACTAAAAGCTGCCAGGAAAAAACAGTTAACCGGTAACTTGGCC
AGTTTATATATTCGCAAAGGCTGCTTCAATGAGCCAATCTCTGAAGCAGA
CTTTTATTGGCCTTTAATACAGCCCAAACAGTCTAGCGGGCCGAAAGCTG
GTCACAAACAGCTCAAGTATACACCATGCCTACAGGGTGTCAGGATTTTA
AATTACATACAGAGCATCCCAAAAAAGTCCTGTGTCAGGCCAATCCTAAA
AGGGAGAATAACTAATTACTTTAGAACAATCTTCAGATTATTCCAATGTT
GCATTAAGGTAATATGTCAATTAGAGTTtataattttttgcatttttgtg
tAATTCATTGTTCAATTGTTGTATAATGTTCATGTTGTATGTATAAATAA
TTAAGTTTTAGTAACCATTGCGTgtaaaaaagaaactttgtctttttttt
gaaaatatattctaCTAGTAGAAAGTGTACTGACACCCTATAGTTTAATA
TATCTTCCACGCCTTCTCTCGAGGCTATACATGTTAAAATGGTTTCTCCC
AATAATTAAGGTTTGAGCTAAGTTGGATTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021245-exon-sc0000379-1491911889:444651..447383 | TCONS_00021245-exon-sc0000379-1491911889:444651..447383 | Clytia hemisphaerica | exon |
| TCONS_00021245-exon-sc0000379-1510915933:444651..447383 | TCONS_00021245-exon-sc0000379-1510915933:444651..447383 | Clytia hemisphaerica | exon |
| TCONS_00021245-exon-sc0000379-1575043694:444651..447383 | TCONS_00021245-exon-sc0000379-1575043694:444651..447383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:444651..447383 . |
Blast
The following BLAST results are available for this feature:
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