TCONS_00021244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021244
Unique NameTCONS_00021244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021244 ID=TCONS_00021244|Name=TCONS_00021244|organism=Clytia hemisphaerica|type=transcript|length=491bp
ACAACGACGCAGAACACCTAGGATTCATCACCTTCAACAAGGAAGGAAAG
AGCCCCCGAACACAAGACACAAGTGCAATCAAGAGGATTCCCCAACTCAT
CAGAGACAACCTTGGGATACAAGTCGAAACACGTCCTGACAGCAACGAAG
CAGACCCAACAGAGATCGAAGAGATACTGAAACTTGTCGACGGATACCGA
GGTTTAGTCTTCGACGACAACAAAATTGGATGCATCAGAACGAAGCCCAT
CCACCTCGACTATGAAGAAGAATTCGAGCCAAAGCAACCACCATTTCGCA
ACGTTCCAATCCACTATCAAGGCGAAGTCAGCGAACTCCTTGAATTCCTG
AGAACACAGGGAGTGATAACGGATGTGGACCCACGATAAAGCTATGACTG
CGTGATGAACGTGGTGATAACAGATAAAAGCAATGGTCAAATCAGGATGA
ACATAGACAACACACCACGCAATGCGGGGATGAAGCGCACT
Run BLAST on NCBI

protein sequence of TCONS_00021244-protein

>TCONS_00021244-protein ID=TCONS_00021244-protein|Name=TCONS_00021244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
NDAEHLGFITFNKEGKSPRTQDTSAIKRIPQLIRDNLGIQVETRPDSNEA
DPTEIEEILKLVDGYRGLVFDDNKIGCIRTKPIHLDYEEEFEPKQPPFRN
VPIHYQGEVSELLEFLRTQGVITDVDPR
Run BLAST on NCBI

transcript from alignment at sc0000379:417623..418113

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021244 ID=TCONS_00021244|Name=TCONS_00021244|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0000379:417623..418113 (Clytia hemisphaerica)
AGTGCGCTTCATCCCCGCATTGCGTGGTGTGTTGTCTATGTTCATCCTGA
TTTGACCATTGCTTTTATCTGTTATCACCACGTTCATCACGCAGTCATAG
CTTTATCGTGGGTCCACATCCGTTATCACTCCCTGTGTTCTCAGGAATTC
AAGGAGTTCGCTGACTTCGCCTTGATAGTGGATTGGAACGTTGCGAAATG
GTGGTTGCTTTGGCTCGAATTCTTCTTCATAGTCGAGGTGGATGGGCTTC
GTTCTGATGCATCCAATTTTGTTGTCGTCGAAGACTAAACCTCGGTATCC
GTCGACAAGTTTCAGTATCTCTTCGATCTCTGTTGGGTCTGCTTCGTTGC
TGTCAGGACGTGTTTCGACTTGTATCCCAAGGTTGTCTCTGATGAGTTGG
GGAATCCTCTTGATTGCACTTGTGTCTTGTGTTCGGGGGCTCTTTCCTTC
CTTGTTGAAGGTGATGAATCCTAGGTGTTCTGCGTCGTTGT

Coding sequence (CDS) from alignment at sc0000379:417623..418113

>TCONS_00021244 ID=TCONS_00021244|Name=TCONS_00021244|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000379:417623..418113 (Clytia hemisphaerica)
TTATCGTGGGTCCACATCCGTTATCACTCCCTGTGTTCTCAGGAATTCAA
GGAGTTCGCTGACTTCGCCTTGATAGTGGATTGGAACGTTGCGAAATGGT
GGTTGCTTTGGCTCGAATTCTTCTTCATAGTCGAGGTGGATGGGCTTCGT
TCTGATGCATCCAATTTTGTTGTCGTCGAAGACTAAACCTCGGTATCCGT
CGACAAGTTTCAGTATCTCTTCGATCTCTGTTGGGTCTGCTTCGTTGCTG
TCAGGACGTGTTTCGACTTGTATCCCAAGGTTGTCTCTGATGAGTTGGGG
AATCCTCTTGATTGCACTTGTGTCTTGTGTTCGGGGGCTCTTTCCTTCCT
TGTTGAAGGTGATGAATCCTAGGTGTTCTGCGTCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011891XLOC_011891Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021244-proteinTCONS_00021244-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021244-exon-sc0000379-1491911889:417623..418113TCONS_00021244-exon-sc0000379-1491911889:417623..418113Clytia hemisphaericaexon
TCONS_00021244-exon-sc0000379-1510915933:417623..418113TCONS_00021244-exon-sc0000379-1510915933:417623..418113Clytia hemisphaericaexon
TCONS_00021244-exon-sc0000379-1575043694:417623..418113TCONS_00021244-exon-sc0000379-1575043694:417623..418113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:417623..418113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.660813	1.5347	2.73366	2.00709	1.22347	1.58182	2.42248	3.27907	2.54599	5.06452	3.43307	3.42638	2.20744	2.25921	1.97758	2.05913	2.44158	2.2804	4.72132	3.67815	3.44807	4.95794	1.69712	1.26069	4.28654	5.04664	2.90358	1.73432	1.29111	2.04989
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top