TCONS_00021241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021241
Unique NameTCONS_00021241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021241 ID=TCONS_00021241|Name=TCONS_00021241|organism=Clytia hemisphaerica|type=transcript|length=867bp
CTCTACTGTATTTAGTGAGAGAGAACGAACTTTTGAACTGAAGTAAACAT
GTGATCTACTTACAATACAACTTAAATCTACTTACAATTCACTGgtgaaa
aaatcattatttcatATCGATTTGTATAAGATagcaaatttcttttcaag
ctCAATGCTTTTATGAAGATTCAAATCGATCTGCCACGGAAAGAGGCATG
CGAACGTCTTGGATACGATTTTTTGGATGAAAGCAAGAGAATGGACCAAG
TTGGTTACATTGCAAATATGGTCAATCAAATACGGGCGGTATTGTTTGAC
ATCCGATTAGAAGCTCTGAAGTATCAAAACGACAATGCTTTGACAGATGG
TGATCTTCGCAAATGTCCTCACTGTGACCTCAGTTGGTTCAAGGCTGAAG
GATGTGATGAAGAAACGACCTGTGGTGATATACCATCTCTTGCTCTTGAT
ATACCACCTGATATTGCTGTAATGGCAGGTTTCTCCTTTAAGGTCCTAGG
ATCTCGCCAGATTTGGATCGAAAAAACATACGAAAGAGTACACGATTTTC
GGTTAATTGGATATTGGCATCTTAATCCAGCAGCCCAGTATGGGGCTACC
GAAAAAGAGTCCATGAAAGAACCATCAGACCCTTTGTTTGGTATTGTCAA
TGGAGAGCGTATCAAACAACCATGTGGGAGAGAGATAGTATGGAGAGATA
TGCCTGTTGTTGCTATCCCTACTGaaattaaatttgataaagacaatGCT
AAAGCTTGCATTAATACTGCTGACATTCCACATCTTCCAGACGAAGGTAG
ATGCGTTAAATGACGAAATAGACCAAAAACTCAGAGACTTGAGTGagaaa
gatatttcaaattagGT
Run BLAST on NCBI

protein sequence of TCONS_00021241-protein

>TCONS_00021241-protein ID=TCONS_00021241-protein|Name=TCONS_00021241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MKIQIDLPRKEACERLGYDFLDESKRMDQVGYIANMVNQIRAVLFDIRLE
ALKYQNDNALTDGDLRKCPHCDLSWFKAEGCDEETTCGDIPSLALDIPPD
IAVMAGFSFKVLGSRQIWIEKTYERVHDFRLIGYWHLNPAAQYGATEKES
MKEPSDPLFGIVNGERIKQPCGREIVWRDMPVVAIPTEIKFDKDNAKACI
NTADIPHLPDEGRCVK
Run BLAST on NCBI

transcript from alignment at sc0000379:241416..242282

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021241 ID=TCONS_00021241|Name=TCONS_00021241|organism=Clytia hemisphaerica|type=transcript|length=867bp|location=Sequence derived from alignment at sc0000379:241416..242282 (Clytia hemisphaerica)
ACctaatttgaaatatctttctCACTCAAGTCTCTGAGTTTTTGGTCTAT
TTCGTCATTTAACGCATCTACCTTCGTCTGGAAGATGTGGAATGTCAGCA
GTATTAATGCAAGCTTTAGCattgtctttatcaaatttaatttCAGTAGG
GATAGCAACAACAGGCATATCTCTCCATACTATCTCTCTCCCACATGGTT
GTTTGATACGCTCTCCATTGACAATACCAAACAAAGGGTCTGATGGTTCT
TTCATGGACTCTTTTTCGGTAGCCCCATACTGGGCTGCTGGATTAAGATG
CCAATATCCAATTAACCGAAAATCGTGTACTCTTTCGTATGTTTTTTCGA
TCCAAATCTGGCGAGATCCTAGGACCTTAAAGGAGAAACCTGCCATTACA
GCAATATCAGGTGGTATATCAAGAGCAAGAGATGGTATATCACCACAGGT
CGTTTCTTCATCACATCCTTCAGCCTTGAACCAACTGAGGTCACAGTGAG
GACATTTGCGAAGATCACCATCTGTCAAAGCATTGTCGTTTTGATACTTC
AGAGCTTCTAATCGGATGTCAAACAATACCGCCCGTATTTGATTGACCAT
ATTTGCAATGTAACCAACTTGGTCCATTCTCTTGCTTTCATCCAAAAAAT
CGTATCCAAGACGTTCGCATGCCTCTTTCCGTGGCAGATCGATTTGAATC
TTCATAAAAGCATTGagcttgaaaagaaatttgctATCTTATACAAATCG
ATatgaaataatgattttttcacCAGTGAATTGTAAGTAGATTTAAGTTG
TATTGTAAGTAGATCACATGTTTACTTCAGTTCAAAAGTTCGTTCTCTCT
CACTAAATACAGTAGAG

Coding sequence (CDS) from alignment at sc0000379:241416..242282

>TCONS_00021241 ID=TCONS_00021241|Name=TCONS_00021241|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at sc0000379:241416..242282 (Clytia hemisphaerica)
TCATTTAACGCATCTACCTTCGTCTGGAAGATGTGGAATGTCAGCAGTAT
TAATGCAAGCTTTAGCattgtctttatcaaatttaatttCAGTAGGGATA
GCAACAACAGGCATATCTCTCCATACTATCTCTCTCCCACATGGTTGTTT
GATACGCTCTCCATTGACAATACCAAACAAAGGGTCTGATGGTTCTTTCA
TGGACTCTTTTTCGGTAGCCCCATACTGGGCTGCTGGATTAAGATGCCAA
TATCCAATTAACCGAAAATCGTGTACTCTTTCGTATGTTTTTTCGATCCA
AATCTGGCGAGATCCTAGGACCTTAAAGGAGAAACCTGCCATTACAGCAA
TATCAGGTGGTATATCAAGAGCAAGAGATGGTATATCACCACAGGTCGTT
TCTTCATCACATCCTTCAGCCTTGAACCAACTGAGGTCACAGTGAGGACA
TTTGCGAAGATCACCATCTGTCAAAGCATTGTCGTTTTGATACTTCAGAG
CTTCTAATCGGATGTCAAACAATACCGCCCGTATTTGATTGACCATATTT
GCAATGTAACCAACTTGGTCCATTCTCTTGCTTTCATCCAAAAAATCGTA
TCCAAGACGTTCGCATGCCTCTTTCCGTGGCAGATCGATTTGAATCTTCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011888XLOC_011888Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021241-proteinTCONS_00021241-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021241-exon-sc0000379-1491911889:241416..242282TCONS_00021241-exon-sc0000379-1491911889:241416..242282Clytia hemisphaericaexon
TCONS_00021241-exon-sc0000379-1510915933:241416..242282TCONS_00021241-exon-sc0000379-1510915933:241416..242282Clytia hemisphaericaexon
TCONS_00021241-exon-sc0000379-1575043694:241416..242282TCONS_00021241-exon-sc0000379-1575043694:241416..242282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:241416..242282 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161753	0.26289	0	0	0.0727108	0	0	0.259584	0.181741	0.112558	0.0546257	0.179544	0.466165	0.0744796	0.0612323	0	0.121427	0.165945	0.51584	0.35986	0.364914	0.381412	0.0618208	0.168612	0.173667	0.723302	0.44359	0.157804	1.01735	0.853606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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