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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021232 ID=TCONS_00021232|Name=TCONS_00021232|organism=Clytia hemisphaerica|type=transcript|length=866bp
GTGACAGTACCCATCCCCATGGAAATTCAGACATTAATGGCCTGATATAT
GTGGTATATCAGGTTTTAGATTCATAGTGTTATGTTTTTATCTGTACTCT
TCATTCAGCCTCTGTTTCATGTAGCCTCACTCTCATGAGTATTTAAAGAG
CACATGGTACCTGAACAGCCTCTTTCTTCACTGTGCATGCTGACCTGtat
ttttgctgatttattATACAAACTTTTCTGAAACTTACTTTACGTTACCT
ACACTACAACAATGGCTAGCAACTCTCCATCTGCAATTGCTTCTACTGAT
ACAGACACTTCAAAATCTAAGAAGACTCCAGAACTTCCCTCAAGAGTCAG
AAAGTGTCCCAGTTGTAGGATCCCACACACTGAACATACCTTTGGGCAGC
CTGGACCGCAATGCACTGGACCAGAATCTTCAGGTGAGGGAACTCAACAA
CAATCTCCCGGACGTCACAACTCGTCTACCATTTCGAATGACGCCCTCGT
AGATAAAAGCGCCCAAGTCACATATTATAAAAAACAATTAGAACTTCTCG
AACAAGAAGAACAGCGTGTTTTGAGCGAGATCAATAATGAGGAGAACCTC
TTGCTGCAACAGATAGAGCAAAAGAAACGTGAGATCGACCTTCTGAAAGC
TCGCAGGCTCCAATCCCAATCGATCCAATCAACGAACTCTTCTGTCTCCG
CCTCCCGTCATCAACCCGCCCCCACCCCAACGTCTCAAGCTACAACAAAC
GCCGCCATCTTACCTTCGCTGTTCGATGACGATCGCCCTGTACGCCCACA
AGTTTTGCAAAGTGgatctttattagaaaactctaGAGGTCATCTTTCTG
ACCCCCTTGCCTTGGC Run BLAST on NCBI protein sequence of TCONS_00021232-protein >TCONS_00021232-protein ID=TCONS_00021232-protein|Name=TCONS_00021232-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MASNSPSAIASTDTDTSKSKKTPELPSRVRKCPSCRIPHTEHTFGQPGPQ
CTGPESSGEGTQQQSPGRHNSSTISNDALVDKSAQVTYYKKQLELLEQEE
QRVLSEINNEENLLLQQIEQKKREIDLLKARRLQSQSIQSTNSSVSASRH
QPAPTPTSQATTNAAILPSLFDDDRPVRPQVLQSGSLLENSRGHLSDPLA
L Run BLAST on NCBI transcript from alignment at sc0000379:127220..128085 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021232 ID=TCONS_00021232|Name=TCONS_00021232|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at sc0000379:127220..128085 (Clytia hemisphaerica)
GCCAAGGCAAGGGGGTCAGAAAGATGACCTCtagagttttctaataaaga
tcCACTTTGCAAAACTTGTGGGCGTACAGGGCGATCGTCATCGAACAGCG
AAGGTAAGATGGCGGCGTTTGTTGTAGCTTGAGACGTTGGGGTGGGGGCG
GGTTGATGACGGGAGGCGGAGACAGAAGAGTTCGTTGATTGGATCGATTG
GGATTGGAGCCTGCGAGCTTTCAGAAGGTCGATCTCACGTTTCTTTTGCT
CTATCTGTTGCAGCAAGAGGTTCTCCTCATTATTGATCTCGCTCAAAACA
CGCTGTTCTTCTTGTTCGAGAAGTTCTAATTGTTTTTTATAATATGTGAC
TTGGGCGCTTTTATCTACGAGGGCGTCATTCGAAATGGTAGACGAGTTGT
GACGTCCGGGAGATTGTTGTTGAGTTCCCTCACCTGAAGATTCTGGTCCA
GTGCATTGCGGTCCAGGCTGCCCAAAGGTATGTTCAGTGTGTGGGATCCT
ACAACTGGGACACTTTCTGACTCTTGAGGGAAGTTCTGGAGTCTTCTTAG
ATTTTGAAGTGTCTGTATCAGTAGAAGCAATTGCAGATGGAGAGTTGCTA
GCCATTGTTGTAGTGTAGGTAACGTAAAGTAAGTTTCAGAAAAGTTTGTA
TaataaatcagcaaaaataCAGGTCAGCATGCACAGTGAAGAAAGAGGCT
GTTCAGGTACCATGTGCTCTTTAAATACTCATGAGAGTGAGGCTACATGA
AACAGAGGCTGAATGAAGAGTACAGATAAAAACATAACACTATGAATCTA
AAACCTGATATACCACATATATCAGGCCATTAATGTCTGAATTTCCATGG
GGATGGGTACTGTCAC Coding sequence (CDS) from alignment at sc0000379:127220..128085 >TCONS_00021232 ID=TCONS_00021232|Name=TCONS_00021232|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000379:127220..128085 (Clytia hemisphaerica)
CAAGGCAAGGGGGTCAGAAAGATGACCTCtagagttttctaataaagatc
CACTTTGCAAAACTTGTGGGCGTACAGGGCGATCGTCATCGAACAGCGAA
GGTAAGATGGCGGCGTTTGTTGTAGCTTGAGACGTTGGGGTGGGGGCGGG
TTGATGACGGGAGGCGGAGACAGAAGAGTTCGTTGATTGGATCGATTGGG
ATTGGAGCCTGCGAGCTTTCAGAAGGTCGATCTCACGTTTCTTTTGCTCT
ATCTGTTGCAGCAAGAGGTTCTCCTCATTATTGATCTCGCTCAAAACACG
CTGTTCTTCTTGTTCGAGAAGTTCTAATTGTTTTTTATAATATGTGACTT
GGGCGCTTTTATCTACGAGGGCGTCATTCGAAATGGTAGACGAGTTGTGA
CGTCCGGGAGATTGTTGTTGAGTTCCCTCACCTGAAGATTCTGGTCCAGT
GCATTGCGGTCCAGGCTGCCCAAAGGTATGTTCAGTGTGTGGGATCCTAC
AACTGGGACACTTTCTGACTCTTGAGGGAAGTTCTGGAGTCTTCTTAGAT
TTTGAAGTGTCTGTATCAGTAGAAGCAATTGCAGATGGAGAGTTGCTAGC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021232-exon-sc0000379-1491911889:127220..128085 | TCONS_00021232-exon-sc0000379-1491911889:127220..128085 | Clytia hemisphaerica | exon |
| TCONS_00021232-exon-sc0000379-1510915933:127220..128085 | TCONS_00021232-exon-sc0000379-1510915933:127220..128085 | Clytia hemisphaerica | exon |
| TCONS_00021232-exon-sc0000379-1575043694:127220..128085 | TCONS_00021232-exon-sc0000379-1575043694:127220..128085 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:127220..128085 . |
Blast
The following BLAST results are available for this feature:
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