TCONS_00021228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021228
Unique NameTCONS_00021228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021228 ID=TCONS_00021228|Name=TCONS_00021228|organism=Clytia hemisphaerica|type=transcript|length=417bp
tcacacacagactgtttataacattctgtgtcagactaatctacctgcac
caagctctataattttagaactttgtgaggtgaggtattttttgtttttt
ctaaaattatgagcttggattcccaggctaaccATCGTGTATGCCTTTGA
GTGTTTTGTCCCTATGAAGCACGTCTAATTTAGAATGTTCTTGTAACAAT
TCCTTTATATGTGTGTCCaaaattggaacatttttgatgTTTATTGGCGT
GGGTGATTCGTCTAAGATTTTTTCCTTAATCTGACGATTATTGACGtggt
tggagagatatttgtttAGATAAACAGCCTGGGCTTCCCTCAACTCCCAG
ACTCTACCATCTTCGTTCTCGTCAAGTTCATATCTGGCTAATTTTGGGGC
TGGTTGCAGATGACCAT
Run BLAST on NCBI

transcript from alignment at sc0000379:32697..33113

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021228 ID=TCONS_00021228|Name=TCONS_00021228|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at sc0000379:32697..33113 (Clytia hemisphaerica)
ATGGTCATCTGCAACCAGCCCCAAAATTAGCCAGATATGAACTTGACGAG
AACGAAGATGGTAGAGTCTGGGAGTTGAGGGAAGCCCAGGCTGTTTATCT
aaacaaatatctctccaaccaCGTCAATAATCGTCAGATTAAGGAAAAAA
TCTTAGACGAATCACCCACGCCAATAAAcatcaaaaatgttccaattttG
GACACACATATAAAGGAATTGTTACAAGAACATTCTAAATTAGACGTGCT
TCATAGGGACAAAACACTCAAAGGCATACACGATggttagcctgggaatc
caagctcataattttagaaaaaacaaaaaatacctcacctcacaaagttc
taaaattatagagcttggtgcaggtagattagtctgacacagaatgttat
aaacagtctgtgtgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011875XLOC_011875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021228-exon-sc0000379-1491911889:32697..33113TCONS_00021228-exon-sc0000379-1491911889:32697..33113Clytia hemisphaericaexon
TCONS_00021228-exon-sc0000379-1510915933:32697..33113TCONS_00021228-exon-sc0000379-1510915933:32697..33113Clytia hemisphaericaexon
TCONS_00021228-exon-sc0000379-1575043694:32697..33113TCONS_00021228-exon-sc0000379-1575043694:32697..33113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:32697..33113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.403041	2.20845	1.81643	1.49202	10.2097	5.54152	7.42028	5.64774	1.60103	2.53177	0.703077	1.97164	0.290905	0	0.229845	0.133899	0.623449	0.236877	1.54515	1.54501	0.254458	0.402513	0.52068	0.647424	0.735204	0.700517	0	0	1.35141	0.869953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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