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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021192 ID=TCONS_00021192|Name=TCONS_00021192|organism=Clytia hemisphaerica|type=transcript|length=4808bpRun BLAST on NCBI transcript from alignment at sc0000379:210557..228414- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021192 ID=TCONS_00021192|Name=TCONS_00021192|organism=Clytia hemisphaerica|type=transcript|length=17858bp|location=Sequence derived from alignment at sc0000379:210557..228414- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021192 vs. Swiss-Prot (Human)
Match: OVCA2 (Esterase OVCA2 OS=Homo sapiens GN=OVCA2 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 5.203e-42 Identity = 95/228 (41.67%), Postives = 134/228 (58.77%), Query Frame = 2
Query: 83 MADKKLLKVLVIHGYRQSAKLSREKTGSLRKGLKKYLDLVYITAPNKIPPIIPEEHQDGGGEVKEPEEQ-YGWWFSNKKENGDNAFSAQENSQVEYGHQESIDLVEKVLEEQGPFDGILAFSQGATFAAHICVLREKPDSKIKF-NFAILCAGFKSRSTQ-HEIYYQDQITCPTLHVYGDTDKVIPKEMSIDLQTIFTNSTVLNHSGGHYLPATSAERKVYQSFLDQF 757
MA ++ L+VL + G+RQS + REKTG+LRK L+ +LV ++ P+ +P E PEEQ GWWFS ++ + FSA E V G +ES+ +V + L GPFDG+L FSQGA AA +C L + D + F +L +GF R E Q ++ P+LHV+GDTDKVIP + S+ L + F + L HSGGH++PA + +R+ Y FLDQF
Sbjct: 1 MAAQRPLRVLCLAGFRQSERGFREKTGALRKALRGRAELVCLSGPHPVPDPPGPEGARSDFGSCPPEEQPRGWWFSEQEAD---VFSALEEPAVCRGLEESLGMVAQALNRLGPFDGLLGFSQGAALAALVCALGQAGDPRFPLPRFILLVSGFCPRGIGFKESILQRPLSLPSLHVFGDTDKVIPSQESVQLASQFPGAITLTHSGGHFIPAAAPQRQAYLKFLDQF 225 The following BLAST results are available for this feature:
BLAST of TCONS_00021192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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