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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021188 ID=TCONS_00021188|Name=TCONS_00021188|organism=Clytia hemisphaerica|type=transcript|length=803bp
GCGGGTTTGAAGACACATTTTACATCAATTAAACGCGAACACGATGCGGA
GCTGAATGATCCAGGGAAATACAGAGAAGACAAGCTTAAGAAGAAATATC
GCGCCAGAAAACAACGGCTTTATAATGCACGTACAAAATATATCAAGGAT
GGTTGGGAGGAGGAATTGTGGGCTGGTGTAAACCCAAATGACATGACGGA
TGAAGAGGATGGCGCAAACAATTCGTTTAAAAGGAAAACCCCGAAAGATC
GTCCCCTTGAGTTGACAGAACTCATACGGAAATTTGATCGCCGTCACGAA
GAATCAATGGCGAAAAGGGATAAACCTGCCCTGAAAGCTCAGCGAATTTC
ATCAGAGTCTCCCGTGAAATTCGGGTAGTTACTATTTATTATatactttt
taagtttttaaatcGCTTTTAAATTTAAATACGCCTAATTTTCTTTCTTC
GGGACTCAAAAAAGTGTCAAAGTAAAACTTTCTTAGAAATACCATGACAA
TCTCTGAAATttgttcaattaaaaaaaaaggtttttcacaACGTTTGCGA
CTCACTCatagtacacgctttttttagaagaaccagtaaattttggctca
gtctgggctgttcttaattttccgaattttttaggcttaaatgttcttat
gatgttcttaattacgcttagtttctttatttAAGaacttaaaatggctt
aaaatctgttaaaatcccttaaaatcagtacttttttagtaatttctgaa
atctgaggctcagctTGTTCTTactttgttcttaggttttggccaaattt
cag Run BLAST on NCBI protein sequence of TCONS_00021188-protein >TCONS_00021188-protein ID=TCONS_00021188-protein|Name=TCONS_00021188-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
AGLKTHFTSIKREHDAELNDPGKYREDKLKKKYRARKQRLYNARTKYIKD
GWEEELWAGVNPNDMTDEEDGANNSFKRKTPKDRPLELTELIRKFDRRHE
ESMAKRDKPALKAQRISSESPVKFG Run BLAST on NCBI transcript from alignment at sc0000379:135659..136652- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021188 ID=TCONS_00021188|Name=TCONS_00021188|organism=Clytia hemisphaerica|type=transcript|length=994bp|location=Sequence derived from alignment at sc0000379:135659..136652- (Clytia hemisphaerica)
GCGGGTTTGAAGACACATTTTACATCAATTAAACGCGAACACGATGCGGA
GCTGAATGATCCAGGGAAATACAGAGAAGACAAGCTTAAGAAGAAATATC
GCGCCAGAAAACAACGGGTAAGCTTTGCAACCTTAAATGCTTAAGCTAGC
CTCACAAAAAATTACTTCGTGGGTAATCAAAATTCTAAACTAAGGTCACA
CTTGTTTTAGTGTGTACAAGATATTGTCTCTTCTCAAACAATCATTGGTT
GATATAACTCAGAGGACGGAAAAGAAAAGCTTTCAGTTCCTTTTCACTTC
CATTTTAGCTTTATAATGCACGTACAAAATATATCAAGGATGGTTGGGAG
GAGGAATTGTGGGCTGGTGTAAACCCAAATGACATGACGGATGAAGAGGA
TGGCGCAAACAATTCGTTTAAAAGGAAAACCCCGAAAGATCGTCCCCTTG
AGTTGACAGAACTCATACGGAAATTTGATCGCCGTCACGAAGAATCAATG
GCGAAAAGGGATAAACCTGCCCTGAAAGCTCAGCGAATTTCATCAGAGTC
TCCCGTGAAATTCGGGTAGTTACTATTTATTATATACTTTTTAAGTTTTT
AAATCGCTTTTAAATTTAAATACGCCTAATTTTCTTTCTTCGGGACTCAA
AAAAGTGTCAAAGTAAAACTTTCTTAGAAATACCATGACAATCTCTGAAA
TTTGTTCAATTAAAAAAAAAGGTTTTTCACAACGTTTGCGACTCACTCAT
AGTACACGCTTTTTTTAGAAGAACCAGTAAATTTTGGCTCAGTCTGGGCT
GTTCTTAATTTTCCGAATTTTTTAGGCTTAAATGTTCTTATGATGTTCTT
AATTACGCTTAGTTTCTTTATTTAAGAACTTAAAATGGCTTAAAATCTGT
TAAAATCCCTTAAAATCAGTACTTTTTTAGTAATTTCTGAAATCTGAGGC
TCAGCTTGTTCTTACTTTGTTCTTAGGTTTTGGCCAAATTTCAG Coding sequence (CDS) from alignment at sc0000379:135659..136652- >TCONS_00021188 ID=TCONS_00021188|Name=TCONS_00021188|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at sc0000379:135659..136652- (Clytia hemisphaerica)
CTTTATAATGCACGTACAAAATATATCAAGGATGGTTGGGAGGAGGAATT
GTGGGCTGGTGTAAACCCAAATGACATGACGGATGAAGAGGATGGCGCAA
ACAATTCGTTTAAAAGGAAAACCCCGAAAGATCGTCCCCTTGAGTTGACA
GAACTCATACGGAAATTTGATCGCCGTCACGAAGAATCAATGGCGAAAAG
GGATAAACCTGCCCTGAAAGCTCAGCGAATTTCATCAGAGTCTCCCGTGA
AATTCGGGTAGGCGGGTTTGAAGACACATTTTACATCAATTAAACGCGAA
CACGATGCGGAGCTGAATGATCCAGGGAAATACAGAGAAGACAAGCTTAA
GAAGAAATATCGCGCCAGAAAACAACGGCTTTATAATGCACGTACAAAAT
ATATCAAGGATGGTTGGGAGGAGGAATTGTGGGCTGGTGTAAACCCAAAT
GACATGACGGATGAAGAGGATGGCGCAAACAATTCGTTTAAAAGGAAAAC
CCCGAAAGATCGTCCCCTTGAGTTGACAGAACTCATACGGAAATTTGATC
GCCGTCACGAAGAATCAATGGCGAAAAGGGATAAACCTGCCCTGAAAGCT
CAGCGAATTTCATCAGAGTCTCCCGTGAAATTCGGGTAGGCGGGTTTGAA
GACACATTTTACATCAATTAAACGCGAACACGATGCGGAGCTGAATGATC
CAGGGAAATACAGAGAAGACAAGCTTAAGAAGAAATATCGCGCCAGAAAA
CAACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021188-exon-sc0000379-1575043694:136536..136652 | TCONS_00021188-exon-sc0000379-1575043694:136536..136652 | Clytia hemisphaerica | exon |
| TCONS_00021188-exon-sc0000379-1575043694:135659..136344 | TCONS_00021188-exon-sc0000379-1575043694:135659..136344 | Clytia hemisphaerica | exon |
| TCONS_00021188-exon-sc0000379-1510915933:136536..136652 | TCONS_00021188-exon-sc0000379-1510915933:136536..136652 | Clytia hemisphaerica | exon |
| TCONS_00021188-exon-sc0000379-1510915933:135659..136344 | TCONS_00021188-exon-sc0000379-1510915933:135659..136344 | Clytia hemisphaerica | exon |
| TCONS_00021188-exon-sc0000379-1491911889:136536..136652 | TCONS_00021188-exon-sc0000379-1491911889:136536..136652 | Clytia hemisphaerica | exon |
| TCONS_00021188-exon-sc0000379-1491911889:135659..136344 | TCONS_00021188-exon-sc0000379-1491911889:135659..136344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:135659..136652 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028101 | DUF4616 |
Blast
The following BLAST results are available for this feature:
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