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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021177 ID=TCONS_00021177|Name=TCONS_00021177|organism=Clytia hemisphaerica|type=transcript|length=3097bp
ttttattacttgaattttttaattttttaatttctttttatattttactg
ACATTTTGTAAACCTAGATAACGAAACTGTCTGTCAGTCAGCTTACAATG
TTTTTTCATCGGCTACAATGTAACATTGAAGGAAACTTGAATGACGACAA
AATTTCGGtcattgacaaactttttttcatATTGACTGAAACTTGACTTG
ACTGACGACAAAACTATTTGACATTGACTTAAACTTGACTTGTCTGACGA
AAATATCGTTTACATTGACTAAGCTTGACTTGACCGACGACAAAACTATT
TGACATTGACTGAAAACTTGACTTGACTGACGAAAAAACTATTTTACATT
GACTGAAAACTTGACTTGACTGACGATAAAACTATTTGACATTGACTGAA
ACTGGACTTGACTGACGACAAAACTCTTTTACTTTAACTGAAAACTTGAC
TCGACTGACGAATAGACTCATTTATATTGATTGAAACTTGACTTGACTGA
TGACAAAACTCTCCCACTCTGACTGAAACTTAACTTGGCTTGACTGACGA
CAAGACTCTTTTACATTAACTGAAAACTTGACTTGACTGAAACTCGACTT
GACTGATGACAAAACTCTTTTACAATAACTGAAACTTTACTTGTCTGACG
AAAAAAGTAGTTTACATTGACTAAGCTTGACTTGACCGACGAGAAAACTA
TTTGACATTGACTGAAACTTGAATTGACTGACGACAAAACTCTTTTACTT
TAACTGAAAGCTTGACTTGACTGACGAATAGACTCTTTTACATTAACTGA
AAACTTGACTtgactgaattttgaaaaaactatttGAAATTGACTAAACT
TGGCTTGACTGATGATTAAACAATTTCAAACTTACTGACGACAAAACTCT
TTTACTCTACactctcggtcaaaatatattgagaatttcggTATTACCTT
GTTTACtaaatttaaagttcgggcgagaaagtcgcttttgggctatttgt
taaatttaatcgaatatttcaattcgggaggagtttatagacttccagga
tATATTCTAAGcgctattggaccattcttgtacttttggatcctcagatc
ctacctaaggtcttaagtctaatgttaaaactctacccttccagaGCGCT
TCGAAATTGTTTGTGACTATAAGATTTCAtgggaattttcctttttttct
caaatattatgacccggattttaactgaaacttgacttgacttgactgac
aacaaaaaacttttatatTGATTGAAACTTGATTTGACTGACGACAAAGC
TCTTTTACATTAACTGAAACTTGACTTACGACAAAACTATTTGACGTTGA
CTGAAACTTGACAAAACTATTTGACATTGACTTAAACTTGACTTGTCTGA
CGACAAAACTATTTGACATTGACTGAAACTTGACTTGACTGACGACAAAA
CTATTTGACATTGACTTAAACTTGACTTGTCTGACGAAAATATCGTTTAC
ATTGACTAAGCTTGACTTGACCGACGACAAAACTATTTGACATTGACTGA
AACTTGACTTGACTGACGACAAAATCCTAAGCTTGACTTGACCGATGACA
AAACTATTTGAAATTGACTATGACTGAAACTTGACTTGACCGATGACAAA
ACTATTTGAAATTGACTATGACTGAAACTTGACTATGACTGAAACTTGAC
TTGACTTGACCGATGACAAAACTATTTGAAATTGACTATGACTGAAACTT
GATTTGACTGCCAGTAAAGAGTCTGCCACTGACTGAAACTTGATATTCAA
ATCTTACATCAAATAAACATCTTGACAGACGACAAAACTATTTTACATGA
ACTTAAACTTTATTACGACAAAATTTCTAACAATGAATTGGTTGACAAGA
AAAAACCTTTACATTAAATGAGACTGACTTGACTTGACTGATGACAAAAT
CCCTTACTCTGACTAAGCTTGACTTGACTGACGACAAAACTCTATTACAT
TAAGTGAGAGCTTGACTTGACTGACGACAAAACTATTTTACATTGACTGA
AACTCGAATTGACTGAACTCGACTTGACTGACGACAATATTCTTTTACTT
TGACTAAACTCGACTTGACAGACGACAAAACTATTTTACATGAAATTAAA
CTTTATTACGACAAAATTTCTAACAATGAATTGGTTGACAAGAAAAAACC
TTTACATTAAATGAGACTGACTTGACTTGACTTGACTTGACTGATGACAA
AACTCCCTTAATCTGACTAAGCTTGACTTGACTGACGACAAAACTCTATT
ACGTTAAGTGAAAGCTTGACTTGACTGACGACAAAACTATTTTACATTGA
CTGAAACTCGAATTGACTGAACTCGACTTGACTGACGAGAATATTCTTTT
ACATTGACTAAACTCGACTTGACAGACGACAAAACTATTTTAGATGAACT
TATACTTTATCACGACAAAATTTCTAACAATGAATTGGTTGACAATAAAA
AACTCTTACATTAAATGAGACTTCTGACCTGACCTGACTTGACTTGACTT
GACTGATGAAAAAAGTCCATTACTCTGACTAAACTTGACTTGACTGACGA
CAAAAGTCTTTTTCATTGACTGAAACTCGACTTGACTAAACTCGACTTGA
CTGATGACAAAACTATTTTACATGAACTTAAACTTTAGTACGACAAAATT
TATAATAATGAATTGGTTGACAATAAAAAACTCTTACATTAAATGAGACC
TCTGACCTGACCTGACTTGACTTGACTTAACTTGACTGATGAAAAAAGTC
CATTACTCTGACTAAACTTGACTTGACTGACGACAAAAGTCTTTTTCATT
GACTGAAACTCGACTTGACTAAACTCGACTTGACTGATGACAAAACTATT
TTACATGAACTTAAACTTTAGTACGACAAAATTTATAACAATGAATTGGT
TGACAATAAAAAACTCTTACATTAAATGAGACCTCTGACCTGACCTGACT
TGACTTGACTTGACTTGACTGATGAAAAAAGTCCATTACTCTGACTAAAC
TTGACTTGACTGACGacaaaagtcttttttattGACTGAAACTCGAC Run BLAST on NCBI transcript from alignment at sc0000379:257243..264974+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021177 ID=TCONS_00021177|Name=TCONS_00021177|organism=Clytia hemisphaerica|type=transcript|length=7732bp|location=Sequence derived from alignment at sc0000379:257243..264974+ (Clytia hemisphaerica)
ttttattacttgaattttttaattttttaatttctttttatattttactg
ACATTTTGTAAACCTAGATAACGAAACTGTCTGTCAGTCAGCTTACAATG
TTTTTTCATCGGCTACAATGTAACATTGAAGGAAACTTGAATGACGACAA
AATTTCGGtcattgacaaactttttttcatatttactgAAACTTGACATG
ACTGACGACAAAACTGTTTTACATTGACTGAAACTTGACTTGACTGACGA
CAAAACTCTTTTACTTTTGACTGAAACTTGACTTGATTGACGACAAAACT
GTTTTACATTGACTGAAACTTGACTTGACTGACGACAAAACTCTTTTACT
TTTGACTGAAACTTGACTTTATTGACGAAAAAACTATTTGACATTGACTG
AAACTTGACTTGACTGACGACAAAACTGCTTTACTTTGACTGAAACCTGA
CTTGACTGAcgacaaaattattttactttgACTGAAGTTTGACTTGACTG
ACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAA
AACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTT
TTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTA
AACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAA
AGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGA
CTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACT
GACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACA
AAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCT
TTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTT
AAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGA
AAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTG
ACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGAC
TGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGAC
AAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTC
TTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACT
TAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTG
AAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTT
GACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGA
CTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGA
CAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACT
CTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTAC
TTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACT
GAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCT
TGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTG
ACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACG
ACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAAC
TCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTA
CTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAAC
TGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGC
TTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTT
GACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGAC
GACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAA
CTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTT
ACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAA
CTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAG
CTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACT
TGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGA
CGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAA
ACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTT
TACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAA
ACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAA
GCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGAC
TTGACTGACGACAAAACTCTTTTACTTTAACTGAAACTTGACTTGTCTGA
CGAAAAAAGTCGTTTACATTGACTAAGCTTGACTTGACCGATGACAAAAC
TATTTGACATTGACTGAAAACTTGACTTGACTGACGAAAAAACCATTTTA
CATTGACTGAAAACTTGACTTGACTGACGACAAAACTATTTGACATTGAC
TGAAACTGGACTTGACTGACGACAAAACTCTTTTACTTTAACTGAAACTT
GACTTGTCTGACGAAAAAAGTCGTTTACATTGACTAAGCTTGACTTGACC
GACGACAAAACTATTTTACATTGACTGAAAAATTGACTTGACTGACGAAA
AAACTATTTTACATTGACTGAAAACTTGACTTGACTGACGACAAAACTAT
TTGACATTGACTGAAACTTGAATTGACTGACGACAAAACTCTTTTACTTT
TGACTGAAACTTGACTTGATTGACGAAAAAACTATTTGACATTGACTGAA
ACTTGACTTGACTGACAACAAAACTGCTTTACTTTGACTGAAACCTGACT
TGACTGAcgacaaaattattttactttgACTGAAGTTTGACTTGACTGAC
GACAAAACTGCTTTACTTTGACTGAAACCTGACTTGACTGAcgacaaaat
tattttactttgACTGAAGTTTGACTTGACTGACGACAAAACTGCTTTAC
TTTGACTGAAACCTGACTTGACTGAcgacaaaattattttactttgACTG
AAACTTGACTTGACTGACGACAAAACTATTTGAAATTGACTGAAACTTGA
CTTGTCTGACGACAAAACTATTTGACATTAACTGAAAACTTGACTTGACT
GACGACAAAACTCTTTTACATTAACTGAAATTCGACTTGACTGATGACAA
AACTCTTTTACAATAACTGAAACTTGACTTGTCTGACGAAAAAAGTCGTT
TACATTGACTAAGCTTGACTTGACCGACGACAAAACTATTTGACATTGAC
TGAAAACTTGACTTGACTGACGAAAAAACTATTTTACATTGACTAAAAAC
TTGACTTGACTGACGACAAAACTATTTTACTTTAACTGAAAACTTGACTT
GACTGACGACAAGACTCATTTATATTGATTGAAACTTGACTTGACTGATG
ACAAAACTCTCCCACTCTGACTGAAACTTAACTTGGCTTGACTGACGACA
AGACTCTTTTACATTAACTGAAAACTTGACTTGACTGATGACAAAACTCT
CCCACTCTGACTGAAACTTAACTTGGCTTGACTGACGACAAGACTCTTTT
ACATTAACTGAAAACTTGACTTGACTGAAACTTGACTTGACTGAAACTCG
ACTTGACTGATGACAAAACTATTTTACAATAGCTGAAACTTTACTTGTCT
GACGAAAAAAGTAGTTTACATTGACTAAGCTTGACTTGACCGACGAGAAA
ACTATTTGACATTGACTGAAACTTGACTTGACTGACGACAAAACTCTTTT
ACTTAAACTGAAAGCTTGACTTGACTGACGAATAGACTCTTTTACATTAA
CTGAAAACTTGACTtgactgaattttgaaaaaactgtttgAAATTGACTA
AACTCTTGGCTTGACTGATGATTAAACAATTTCAAACTTAAAGACGACAA
AACTCTTTTACTCTACactctcggtcaaaatatattgggaatttCGGTAT
TACCTTGCTTACtaaatttaaagttcgggcgagaaagtcgcttttgggct
atttgttaaatttaatcgaatatttcaattcgggaggagtttatagactt
ccaggatATATTCTAAGcgctattggaccattcttgtacttttggatcct
cagatcctacctaaggtcttaagtctaatgttaaaactctacccttccag
aGCGCTTCGAAATTGTTTGTGACTATAAGATTTCAtgggaattttccttt
ttttctcaaatattatgacccgGATTTTAACTGAAACTTGACTTGACTTG
ACTGACAACAAAAACCTTTTATATTGATTGAAACTTGATTTGACTGACGA
CAAAGCTCTTTTACTCTGACTGAAAATTGAATTTACTGACGACAAAGCTC
TTTTACATTAACTGAAACTTGACTTACGACAAAACTATTTGACGTTGAGT
GAAACTTGACAAAACTATTTGACATTGACTTAAACTTGACTTGACTGACA
ACAAAACTATTTGACATTGACTGAAACTTGACTTGACTGACGACAAAACT
ATTTGACATTGACTTAAACTTGACTTGTCTGACGAAAATATCGTTTACAT
TGACTAAGCTTGACTTGACCGACGACAAAACTATTTGACATTGACTGAAA
ACTTGACTTGACTGACGAAAAAACTATTTTACATTGACTGAAAACTTGAC
TTGACTGACGATAAAACTATTTGACATTGACTGAAACTGGACTTGACTGA
CGACAAAACTCTTTTACTTTAACTGAAAACTTGACTCGACTGACGAATAG
ACTCATTTATATTGATTGAAACTTGACTTGACTGATGACAAAACTCTCCC
ACTCTGACTGAAACTTAACTTGGCTTGACTGACGACAAGACTCTTTTACA
TTAACTGAAAACTTGACTTGACTGAAACTCGACTTGACTGATGACAAAAC
TCTTTTACAATAACTGAAACTTTACTTGTCTGACGAAAAAAGTAGTTTAC
ATTGACTAAGCTTGACTTGACCGACGAGAAAACTATTTGACATTGACTGA
AACTTGAATTGACTGACGACAAAACTCTTTTACTTTAACTGAAAGCTTGA
CTTGACTGACGAATAGACTCTTTTACATTAACTGAAAACTTGACTtgact
gaattttgaaaaaactatttGAAATTGACTAAACTTGGCTTGACTGATGA
TTAAACAATTTCAAACTTACTGACGACAAAACTCTTTTACTCTACactct
cggtcaaaatatattgagaatttcggTATTACCTTGTTTACtaaatttaa
agttcgggcgagaaagtcgcttttgggctatttgttaaatttaatcgaat
atttcaattcgggaggagtttatagacttccaggatATATTCTAAGcgct
attggaccattcttgtacttttggatcctcagatcctacctaaggtctta
agtctaatgttaaaactctacccttccagaGCGCTTCGAAATTGTTTGTG
ACTATAAGATTTCAtgggaattttcctttttttctcaaatattatgaccc
ggattttaactgaaacttgacttgacttgactgacaacaaaaaactttta
tatTGATTGAAACTTGATTTGACTGACGACAAAGCTCTTTTACATTAACT
GAAACTTGACTTACGACAAAACTATTTGACGTTGACTGAAACTTGACAAA
ACTATTTGACATTGACTTAAACTTGACTTGTCTGACGACAAAACTATTTG
ACATTGACTGAAACTTGACTTGACTGACGACAAAACTATTTGACATTGAC
TTAAACTTGACTTGTCTGACGAAAATATCGTTTACATTGACTAAGCTTGA
CTTGACCGACGACAAAACTATTTGACATTGACTGAAACTTGACTTGACTG
ACGACAAAATCCTAAGCTTGACTTGACCGATGACAAAACTATTTGAAATT
GACTATGACTGAAACTTGACTTGACCGATGACAAAACTATTTGAAATTGA
CTATGACTGAAACTTGACTATGACTGAAACTTGACTTGACTTGACCGATG
ACAAAACTATTTGAAATTGACTATGACTGAAACTTGATTTGACTGCCAGT
AAAGAGTCTGCCACTGACTGAAACTTGATATTCAAATCTTACATCAAATA
AACATCTTGACAGACGACAAAACTATTTTACATGAACTTAAACTTTATTA
CGACAAAATTTCTAACAATGAATTGGTTGACAAGAAAAAACCTTTACATT
AAATGAGACTGACTTGACTTGACTGATGACAAAATCCCTTACTCTGACTA
AGCTTGACTTGACTGACGACAAAACTCTATTACATTAAGTGAGAGCTTGA
CTTGACTGACGACAAAACTATTTTACATTGACTGAAACTCGAATTGACTG
AACTCGACTTGACTGACGACAATATTCTTTTACTTTGACTAAACTCGACT
TGACAGACGACAAAACTATTTTACATGAAATTAAACTTTATTACGACAAA
ATTTCTAACAATGAATTGGTTGACAAGAAAAAACCTTTACATTAAATGAG
ACTGACTTGACTTGACTTGACTTGACTGATGACAAAACTCCCTTAATCTG
ACTAAGCTTGACTTGACTGACGACAAAACTCTATTACGTTAAGTGAAAGC
TTGACTTGACTGACGACAAAACTATTTTACATTGACTGAAACTCGAATTG
ACTGAACTCGACTTGACTGACGAGAATATTCTTTTACATTGACTAAACTC
GACTTGACAGACGACAAAACTATTTTAGATGAACTTATACTTTATCACGA
CAAAATTTCTAACAATGAATTGGTTGACAATAAAAAACTCTTACATTAAA
TGAGACTTCTGACCTGACCTGACTTGACTTGACTTGACTGATGAAAAAAG
TCCATTACTCTGACTAAACTTGACTTGACTGACGACAAAAGTCTTTTTCA
TTGACTGAAACTCGACTTGACTAAACTCGACTTGACTGATGACAAAACTA
TTTTACATGAACTTAAACTTTAGTACGACAAAATTTATAATAATGAATTG
GTTGACAATAAAAAACTCTTACATTAAATGAGACCTCTGACCTGACCTGA
CTTGACTTGACTTAACTTGACTGATGAAAAAAGTCCATTACTCTGACTAA
ACTTGACTTGACTGACGACAAAAGTCTTTTTCATTGACTGAAACTCGACT
TGACTAAACTCGACTTGACTGATGACAAAACTATTTTACATGAACTTAAA
CTTTAGTACGACAAAATTTATAACAATGAATTGGTTGACAATAAAAAACT
CTTACATTAAATGAGACCTCTGACCTGACCTGACTTGACTTGACTTGACT
TGACTGATGAAAAAAGTCCATTACTCTGACTAAACTTGACTTGACTGACG
acaaaagtcttttttattGACTGAAACTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021177-exon-sc0000379-1491911889:257243..257422 | TCONS_00021177-exon-sc0000379-1491911889:257243..257422 | Clytia hemisphaerica | exon |
| TCONS_00021177-exon-sc0000379-1510915933:257243..257422 | TCONS_00021177-exon-sc0000379-1510915933:257243..257422 | Clytia hemisphaerica | exon |
| TCONS_00021177-exon-sc0000379-1575043694:257243..257422 | TCONS_00021177-exon-sc0000379-1575043694:257243..257422 | Clytia hemisphaerica | exon |
| TCONS_00021177-exon-sc0000379-1491911889:262058..264974 | TCONS_00021177-exon-sc0000379-1491911889:262058..264974 | Clytia hemisphaerica | exon |
| TCONS_00021177-exon-sc0000379-1510915933:262058..264974 | TCONS_00021177-exon-sc0000379-1510915933:262058..264974 | Clytia hemisphaerica | exon |
| TCONS_00021177-exon-sc0000379-1575043694:262058..264974 | TCONS_00021177-exon-sc0000379-1575043694:262058..264974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000379 | supercontig | sc0000379:257243..264974 + |
Blast
The following BLAST results are available for this feature:
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