TCONS_00021176 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021176
Unique NameTCONS_00021176
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021176 ID=TCONS_00021176|Name=TCONS_00021176|organism=Clytia hemisphaerica|type=transcript|length=1227bp
atttgacaaaaatatgtAGCAATGGTTTTTCACATTGTGAAATTCCACTC
TGAGTAACTAAAATGTCTTCAAAGTTAACGATAGAAGAAGAGGAAAGACG
CCGGGTGCGCCGTGAACGTAATAAAGTCGCCGCATCACGTTGTCGCGtca
aaagaaaatgtcacgtcAGAAGACTGTTGAAGGAATCAGACGACCTGACG
AAATCGAACAACAGTCTACAAAACGAAATCAATAAACTGGAATATGAGAA
ACAAAAACTAGAAGGAGCAATCAAAAACCATGCGTGTAAAATGTCCAACA
ATGCTTTTTTGGAGGTCCATGGTACCACAAAGGATCGGTTATGCCGTTAT
GGTAACTAGATAGCATTTTCTAGCATTTAGGATTTATTCTCAAATCAAAT
CTCACGAGTTTTTAAATTATAACAATTTaactctttcattttttttatga
aatccaAACTGAGTTGACCACTCACTGTCGTACTTTGTTCAAAATTAATT
GAAGTATTTTCGATAATAGCTACTGAAAAGGAATCTACATCAATTCAAAG
GACTAAATTAAAAAGTATACCTTGTATTTTGACATTCGAATAAACAGCTG
TAATAATTTTAATCAAGATATAGTTTtacttataatttttttattacttg
aattttttaattttttaatttctttttatattttactgACATTTTGTAAA
CCTAGATAACGAAACTGTCTGTCAGTCAGCTTACAATGTTTTTTCATCGG
CTACAATGTAACATTGAAGGAAACTTGAATGACGACAAAATTTCGGtcat
tgacaaactttttttcatatttactgAAACTTGACATGACTGACGACAAA
ACTGTTTTACATTGACTGAAACTTGACTTGACTGACGACAAAACTCTTTT
ACTTTTGACTGAAACTTGACTTGATTGACGACAAAACTGTTTTACATTGA
CTGAAACTTGACTTGACTGACGACAAAACTCTTTTACTTTTGACTGAAAC
TTGACTTTATTGACGAAAAAACTATTTGACATTGACTGAAACTTGACTTG
ACTGACGACAAAACTGCTTTACTTTGACTGAAACCTGACTTGACTGAcga
caaaattattttactttgACTGAAGTTTGACTTGACTGACGACAAAACTC
TTTTACTTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACT
TAAACTGAAAGCTTGACTTGACTGACG
Run BLAST on NCBI

transcript from alignment at sc0000379:255681..257831+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021176 ID=TCONS_00021176|Name=TCONS_00021176|organism=Clytia hemisphaerica|type=transcript|length=2151bp|location=Sequence derived from alignment at sc0000379:255681..257831+ (Clytia hemisphaerica)
atttgacaaaaatatgtAGCAATGGTTTTTCACATTGTGAAATTCCACTC
TGAGTAACTAAAATGTCTTCAAAGGTATGAAATAACAATAGAAGGGCTTC
TAAATAGATTGGGGTAAAGAATTTGAATATAATAAGCCTGTGCAGCTGGG
TATCTGAGTAGCAAATTATTTCTCAGAGAGGGGCTTCTTTTCTCTATTTC
TTGGATGTACATTAATTCATGTGTGTATTACTATATTTCCCTTACAACCT
CAGTTAACGATAGAAGAAGAGGAAAGACGCCGGGTGCGCCGTGAACGTAA
TAAAGTCGCCGCATCACGTTGTCGCGtcaaaagaaaatgtcacgtcAGAA
GACTATTGAAGGTATTGTTTCTTTATCAAACTGTCAAAATTTGTGACTAG
ACCAAATTGACTATTTTATAAAAGATTAttcgagaaaaaccattttgtag
gttttaaagGGGTACAGTAACTGAAAACtggtttctacaaaacatcactg
ctagcgaaaaaaagcatagacagcgtactttcaacacaaaatgtTTCAGC
CttaaacccgggggggggggggacNTCAGTTAACGATAGAAGAAGAGGAA
AGACGCCGGGTGCGCCGTGAACGTAATAAAGTCGCCGCATCACGTTGTCG
CGtcaaaagaaaatgtcacgtcAGAAGACTGTTGAAGGTATTGTTTCTTT
ATCAAACTGTCAAAAGACCAAATTGACTATTTTATAAAAGATTAttcgag
aaaaaccattttgtaggtttaaAAGGGGTAACTGAAAACTGGTTTCTACA
AAAATGTTTCGGCCTTAAATTCCCCCTGATTTTCAGAGAGAGGATACCTC
TactttttgtaggttttaaggggtatccactggtaatgCCCTtatattta
catatttttagactttcagGAGTAAAAGTATTGTAAAGTCTTAACCTAAA
ACGAGCATGAAAATTCATTCCAAGTTACCAGAAATGCCCAAAACAAATAC
TCTTTGTGtattcagaaaaaaagaaacttcaGTACTCAATAGTAAGACAC
AAACTAATCAAAGTGatgtcaaaaacaatttttgataactttcttCAAAA
AACCAGGAATCAGACGACCTGACGAAATCGAACAACAGTCTACAAAACGA
AATCAATAAACTGGAATATGAGAAACAAAAACTAGAAGGAGCAATCAAAA
ACCATGCGTGTAAAATGTCCAACAATGCTTTTTTGGAGGTCCATGGTACC
ACAAAGGATCGGTTATGCCGTTATGGTAACTAGATAGCATTTTCTAGCAT
TTAGGATTTATTCTCAAATCAAATCTCACGAGTTTTTAAATTATAACAAT
TTaactctttcattttttttatgaaatccaAACTGAGTTGACCACTCACT
GTCGTACTTTGTTCAAAATTAATTGAAGTATTTTCGATAATAGCTACTGA
AAAGGAATCTACATCAATTCAAAGGACTAAATTAAAAAGTATACCTTGTA
TTTTGACATTCGAATAAACAGCTGTAATAATTTTAATCAAGATATAGTTT
tacttataatttttttattacttgaattttttaattttttaatttctttt
tatattttactgACATTTTGTAAACCTAGATAACGAAACTGTCTGTCAGT
CAGCTTACAATGTTTTTTCATCGGCTACAATGTAACATTGAAGGAAACTT
GAATGACGACAAAATTTCGGtcattgacaaactttttttcatatttactg
AAACTTGACATGACTGACGACAAAACTGTTTTACATTGACTGAAACTTGA
CTTGACTGACGACAAAACTCTTTTACTTTTGACTGAAACTTGACTTGATT
GACGACAAAACTGTTTTACATTGACTGAAACTTGACTTGACTGACGACAA
AACTCTTTTACTTTTGACTGAAACTTGACTTTATTGACGAAAAAACTATT
TGACATTGACTGAAACTTGACTTGACTGACGACAAAACTGCTTTACTTTG
ACTGAAACCTGACTTGACTGAcgacaaaattattttactttgACTGAAGT
TTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTT
GACTGACGACAAAACTCTTTTACTTAAACTGAAAGCTTGACTTGACTGAC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011863XLOC_011863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021176-exon-sc0000379-1491911889:255681..255754TCONS_00021176-exon-sc0000379-1491911889:255681..255754Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1510915933:255681..255754TCONS_00021176-exon-sc0000379-1510915933:255681..255754Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1575043694:255681..255754TCONS_00021176-exon-sc0000379-1575043694:255681..255754Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1491911889:255934..256018TCONS_00021176-exon-sc0000379-1491911889:255934..256018Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1510915933:255934..256018TCONS_00021176-exon-sc0000379-1510915933:255934..256018Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1575043694:255934..256018TCONS_00021176-exon-sc0000379-1575043694:255934..256018Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1491911889:256345..256367TCONS_00021176-exon-sc0000379-1491911889:256345..256367Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1510915933:256345..256367TCONS_00021176-exon-sc0000379-1510915933:256345..256367Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1575043694:256345..256367TCONS_00021176-exon-sc0000379-1575043694:256345..256367Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1491911889:256787..257831TCONS_00021176-exon-sc0000379-1491911889:256787..257831Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1510915933:256787..257831TCONS_00021176-exon-sc0000379-1510915933:256787..257831Clytia hemisphaericaexon
TCONS_00021176-exon-sc0000379-1575043694:256787..257831TCONS_00021176-exon-sc0000379-1575043694:256787..257831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:255681..257831 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0697009	0	0	0.0530478	0	0	0	0	0	0	0	0	0	0	1.02786e-05	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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