TCONS_00021172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021172
Unique NameTCONS_00021172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021172 ID=TCONS_00021172|Name=TCONS_00021172|organism=Clytia hemisphaerica|type=transcript|length=1514bp
GTTAGATTTCAGAATTTCATAACGTGAAGGATTTCGATTGAATTTCAAGT
TGTCCTTATTATTACGCACATGGTCTTGTTGAGAAACTGataaattttgg
ttttaaagaCTACTTTCATGGGCACAAAATAAGGCCACGGGGAGTGTACC
TGATTTGAGCCATGCGAATTATCAAGTGAGTAACGAAACAACCCAACAGA
CATGCGCAAGTTTCACCACGAGTGAAGATGAAGAGCTCTTCAAAATCAAT
AATGGCGGCGGAGCAGTCAAAATGGAATTAAGATATGCCATCGAGGCAAA
ACGAGCAGGAAAAGGACTTGATATGCCAATTCTCGAACAAATGCATCGAT
TACCAAAACAGTTAACGATAGAAGAAGAGGAAAGACGCCGGGTGCGCCGT
GAACGTAATAAAGTCGCCGCATCACGTTGTCGCGtcaaaagaaaatgtca
cgtcAGAAGACTGTTGAAGGAATCAGACGACCTGACGAAATCGAACAACA
GTCTACAAAACGAAATCAATAAACTGGAATATGAGAAACAAAAACTAGAA
GGAGCAATCAAAAACCATGCGTGTAAAATGTCCAACAATGCTTTTTTGGA
GGTCCATGGTACCACAAAGGATCGGTTATGCCGTTATGGTAACTAGATAG
CATTTTCTAGCATTTAGGATTTATTCTCAAATCAAATCTCACGAGTTTTT
AAATTATAACAATTTaactctttcattttttttatgaaatccaAACTGAG
TTGACCACTCACTGTCGTACTTTGTTCAAAATTAATTGAAGTATTTTCGA
TAATAGCTACTGAAAAGGAATCTACATCAATTCAAAGGACTAAATTAAAA
AGTATACCTTGTATTTTGACATTCGAATAAACAGCTGTAATAATTTTAAT
CAAGATATAGTTTtacttataatttttttattacttgaattttttaattt
tttaatttctttttatattttactgACATTTTGTAAACCTAGATAACGAA
ACTGTCTGTCAGTCAGCTTACAATGTTTTTTCATCGGCTACAATGTAACA
TTGAAGGAAACTTGAATGACGACAAAATTTCGGtcattgacaaacttttt
ttcatatttactgAAACTTGACATGACTGACGACAAAACTGTTTTACATT
GACTGAAACTTGACTTGACTGACGACAAAACTCTTTTACTTTTGACTGAA
ACTTGACTTGATTGACGACAAAACTGTTTTACATTGACTGAAACTTGACT
TGACTGACGACAAAACTCTTTTACTTTTGACTGAAACTTGACTTTATTGA
CGAAAAAACTATTTGACATTGACTGAAACTTGACTTGACTGACGACAAAA
CTGCTTTACTTTGACTGAAACCTGACTTGACTGAcgacaaaattatttta
ctttgACTGAAGTTTGACTTGACTGACGACAAAACTCTTTTACTTAAACT
GAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACTGAAAGCT
TGACTTGACTGACG
Run BLAST on NCBI

transcript from alignment at sc0000379:252161..257831+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021172 ID=TCONS_00021172|Name=TCONS_00021172|organism=Clytia hemisphaerica|type=transcript|length=5671bp|location=Sequence derived from alignment at sc0000379:252161..257831+ (Clytia hemisphaerica)
GTTAGATTTCAGAATTTCATAACGTGAAGGATTTCGATTGAATTTCAAGT
TGTCCTTATTATTACGCACATGGTCTTGTTGAGAAACTGataaattttgg
ttttaaagaCTACTTTCATGGGCACAAAATAAGGTAAGAACTTAAGAAGA
CATTCAAAGTGTGAAGGGTATCAAAAGCAGCTTTAAATTTAGTTGAggct
ttgaaaattgaaaactggCTCAGGACTGCCAGTGCTAGCTGACGGTTTTG
AACCAAATTTCCAGGTTTCATGGTCGCTGATTAAAATCTAACGATatttc
tggaattttttgcaTCAAAACTAACCTAGTGAAACTCTtgcattataaaa
attttcttaatttgggAATAAGTTTGTGTTGTTaatatttggcaaatttt
taccTTTTGTGGACGTTAAAGCCTTTCTGAGACAACAGTGTATACATAAA
AGTTCAGACGTGGGAAGATTTAATGGccattttttacacttttccaAGGG
AAGTTTTGTGTAGTTTATACTGGTTTATACACCATTAATCAAAACCTTAT
AGCTTTTGCACGAATCTCTGATTTTTAGTGGGAAAAAATCTCCAGGTCTT
GTCATTTTAGAGGTTAGCTGGCTCATGACTGctttgttattttttcgaaa
gaaaatttctaaagTAACATTTATATATGTCTCAAAGTTgcttatacacg
ctttttttataagaatagtgtactttggctgagggtgagtattattctta
tttttctattgttctaaacaataggcctattgttctaactctgaaatctc
accctgatattcttatagaagttattttcattaaaaaagcgTGCAATTCA
CTGAATTCACCATCTGTTTGTATATTTACTTAGGCCACGGGGAGTGTACC
TGATTTGAGCCATGCGAATTATCAAGTGAGTAACGAAACAACCCAACAGA
CATGCGCAAGTTTCACCACGAGTGAAGATGAAGAGCTCTTCAAAATCAAT
AATGGCGGCGGAGCAGTCAAAATGGAATTAAGATATGCCATCGAGGCAAA
ACGAGCAGGAAAAGGACTTGATATGCCAATTCTCGAACAAATGCATCGAT
TACCAAAACAGGTACTATATGTTTTCTTTAAAACAGAAATTTTATAGACG
ACGAAAAAGCAAGTGAAAGAGTGGTTAAGTAGAATTTAGATTGGTAAGAA
AGGAAATgcataaacgttttttatataagaacatccaacttttttgaagc
cttcagatgtgctttactttttgggtttcaagcccAAAAAACGTTCttta
catgttcttattttcagcattttttgagtattttggttcattttcctaag
aaaacaggtgttttagagtcaacaaagccttaaaatgttcttagcttgtt
cttaagattttggccaccgaagccttatgttcttatatagtttgttctga
taaaaaaaacgtgtagattaTGAATCACGATTTTCCTTTTGATTTGGGCT
GAATAAAAAATGCATCAATGAACTAGTTTCAAAACTTCTAACCGTTAATT
CAATCAAATGGCACAAATTAATGATATTACTTCACCCTTAGTTATATCAA
TTTCTGTCGGTATTGAGTGCCATTGTTCTTTTTGAAATCACGCGAAATTT
TACAATTTCCGTCCTTTAAAGTTGATATAATTTGATTGGTAGCGGAATGA
CATTGAAGCTACCGCGATATtaaatattcattttttgtgaaagaaatCAT
GTATTTTACACACTATTTTAattaaagaacaattttttaagaacagtttt
TAAGAACATGAAGCTGATATTTGGCTTAAAAATAGATTCGACGTTTAAAA
CTCTAAGAAGAAATACAACTTTAGGCCATAAGGTCTTTAGGTTTTTAATC
TAAGTTTAAGATTTTTGACAAAAGCGACCAAAGATGAGCCAGAATTTACT
GAATTTTTGCTTACGtgtgcactgatctttgttttgcttgccCTTTCCAA
CAAATGTTTCAATTCTAGCATATGATATGAGCactacaatttttttaaaa
atatattcaaaaaatttaaaaaaatgaagatgaaaaaaatgaacttttga
cCCTTTGATGCCAGAAACTTCAGTTTTGGTACAAAGGTACTTTAAAGCCT
CTTTCCGGTGTAAAATAATCTTGAGTCATCTGGAATAAGATACCAGCTCA
ACTGGTTCTTTATCTTTCACTAACAcgtttattcttattttcactactTT
GTGAGCCATTTTGTCAATTTCCGAAGAAATCAAGTGAtttagagtctaca
aagcctcagcttgttcttgatatttcgTCCAtcaaaaccttatgttctta
taaagtttgttcttatgaaagaaAACGCTAATCAGATTAAACAATATGGC
GAGCAAAATTAACATTGATTGGCTAAAAGATAACTATCAGAATCTTTGAC
ATCAATCGAACACTATTTTCTATCACAAGTAATAACTGAATGTTGGTTGG
ACGTCAAAACGACCAGTTCTTCTCAAAACCTGAACTAACTGTACTTTGAA
AAGATGTCAAATAAACGACCTATCTAATCCTATCAAAGGAAAGGCTTATC
AGTGAAGCATCTTTAATGGACTCTTGTCAACTGTGAAGCTCTAATCTCTC
ACATCAAAAGAAAACTCCGCAGTATCTCAGTAATAGGATAATGAAATCGG
ATTGTCAACCGCTCTCTCAAAAGTTCCTTGTTCGCGTCCAAGGTGTGCAT
TCGACATTTTCCAAAGTTAAGTATGGGATGATGAGATCCTCATTTTGata
tagactagcaaactaatctgttaattaatcatgtcagagggcgggaacat
aaaggcggcgggcgtttgctagaataggagctgcgtaggagagcgagcaa
aagttggttagaggctgctgattaacagcccttgccgccgacaaattTTC
Ttactacgcttacctaactcctacgctcacttttcccacgtgataccgtt
ccagcccgactggcgtgccagtctaattttgatacttcattattttgaaa
ttaattagCAAAACCTAAAGGAAAACTAAAATATAGTTGCCTATTAAAGA
TAAGAGGTTAAAGGTTAATTGATGTCCGCCCGCTTAAGCAGCTTATTGTC
ATCGCCTGGACGCGAACAGAGGGATATTTTGAGAGCGGATCTTAAAGAAT
TCCGAAATAAGCCTCCTATTGTTTTTTCTGTAATCCGGTATTCTATTGTT
AATTGAGCTTGTCATTAAAAAGTCATTATAAAGTCATCGTGGGATACTTT
TAATCAACTGCTTTTCTTTTCGATTGAAATGAGTAAACCATTTCATTAGT
CAAGAACATTTGGCGATGAAAGTGCTGTAGTTTGTTTTCTGGCAAAttat
tttaaacgaaaatatGTTCCTTGTATATCAgttttggaaaatgaaaatga
aattcaaattttggaatATTTATTGTTATGCAGGGACTAGAGACaatggt
tgattttttattatggaagtatttgacaaaaatatgtAGCAATGGTTTTT
CACATTGTGAAATTCCACTCTGAGTAACTAAAATGTCTTCAAAGGTATGA
AATAACAATAGAAGGGCTTCTAAATAGATTGGGGTAAAGAATTTGAATAT
AATAAGCCTGTGCAGCTGGGTATCTGAGTAGCAAATTATTTCTCAGAGAG
GGGCTTCTTTTCTCTATTTCTTGGATGTACATTAATTCATGTGTGTATTA
CTATATTTCCCTTACAACCTCAGTTAACGATAGAAGAAGAGGAAAGACGC
CGGGTGCGCCGTGAACGTAATAAAGTCGCCGCATCACGTTGTCGCGtcaa
aagaaaatgtcacgtcAGAAGACTATTGAAGGTATTGTTTCTTTATCAAA
CTGTCAAAATTTGTGACTAGACCAAATTGACTATTTTATAAAAGATTAtt
cgagaaaaaccattttgtaggttttaaagGGGTACAGTAACTGAAAACtg
gtttctacaaaacatcactgctagcgaaaaaaagcatagacagcgtactt
tcaacacaaaatgtTTCAGCCttaaacccgggggggggggggacNTCAGT
TAACGATAGAAGAAGAGGAAAGACGCCGGGTGCGCCGTGAACGTAATAAA
GTCGCCGCATCACGTTGTCGCGtcaaaagaaaatgtcacgtcAGAAGACT
GTTGAAGGTATTGTTTCTTTATCAAACTGTCAAAAGACCAAATTGACTAT
TTTATAAAAGATTAttcgagaaaaaccattttgtaggtttaaAAGGGGTA
ACTGAAAACTGGTTTCTACAAAAATGTTTCGGCCTTAAATTCCCCCTGAT
TTTCAGAGAGAGGATACCTCTactttttgtaggttttaaggggtatccac
tggtaatgCCCTtatatttacatatttttagactttcagGAGTAAAAGTA
TTGTAAAGTCTTAACCTAAAACGAGCATGAAAATTCATTCCAAGTTACCA
GAAATGCCCAAAACAAATACTCTTTGTGtattcagaaaaaaagaaacttc
aGTACTCAATAGTAAGACACAAACTAATCAAAGTGatgtcaaaaacaatt
tttgataactttcttCAAAAAACCAGGAATCAGACGACCTGACGAAATCG
AACAACAGTCTACAAAACGAAATCAATAAACTGGAATATGAGAAACAAAA
ACTAGAAGGAGCAATCAAAAACCATGCGTGTAAAATGTCCAACAATGCTT
TTTTGGAGGTCCATGGTACCACAAAGGATCGGTTATGCCGTTATGGTAAC
TAGATAGCATTTTCTAGCATTTAGGATTTATTCTCAAATCAAATCTCACG
AGTTTTTAAATTATAACAATTTaactctttcattttttttatgaaatcca
AACTGAGTTGACCACTCACTGTCGTACTTTGTTCAAAATTAATTGAAGTA
TTTTCGATAATAGCTACTGAAAAGGAATCTACATCAATTCAAAGGACTAA
ATTAAAAAGTATACCTTGTATTTTGACATTCGAATAAACAGCTGTAATAA
TTTTAATCAAGATATAGTTTtacttataatttttttattacttgaatttt
ttaattttttaatttctttttatattttactgACATTTTGTAAACCTAGA
TAACGAAACTGTCTGTCAGTCAGCTTACAATGTTTTTTCATCGGCTACAA
TGTAACATTGAAGGAAACTTGAATGACGACAAAATTTCGGtcattgacaa
actttttttcatatttactgAAACTTGACATGACTGACGACAAAACTGTT
TTACATTGACTGAAACTTGACTTGACTGACGACAAAACTCTTTTACTTTT
GACTGAAACTTGACTTGATTGACGACAAAACTGTTTTACATTGACTGAAA
CTTGACTTGACTGACGACAAAACTCTTTTACTTTTGACTGAAACTTGACT
TTATTGACGAAAAAACTATTTGACATTGACTGAAACTTGACTTGACTGAC
GACAAAACTGCTTTACTTTGACTGAAACCTGACTTGACTGAcgacaaaat
tattttactttgACTGAAGTTTGACTTGACTGACGACAAAACTCTTTTAC
TTAAACTGAAAGCTTGACTTGACTGACGACAAAACTCTTTTACTTAAACT
GAAAGCTTGACTTGACTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011863XLOC_011863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021172-exon-sc0000379-1491911889:252161..252293TCONS_00021172-exon-sc0000379-1491911889:252161..252293Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1510915933:252161..252293TCONS_00021172-exon-sc0000379-1510915933:252161..252293Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1575043694:252161..252293TCONS_00021172-exon-sc0000379-1575043694:252161..252293Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1491911889:253044..253271TCONS_00021172-exon-sc0000379-1491911889:253044..253271Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1510915933:253044..253271TCONS_00021172-exon-sc0000379-1510915933:253044..253271Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1575043694:253044..253271TCONS_00021172-exon-sc0000379-1575043694:253044..253271Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1491911889:255934..256018TCONS_00021172-exon-sc0000379-1491911889:255934..256018Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1510915933:255934..256018TCONS_00021172-exon-sc0000379-1510915933:255934..256018Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1575043694:255934..256018TCONS_00021172-exon-sc0000379-1575043694:255934..256018Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1491911889:256345..256367TCONS_00021172-exon-sc0000379-1491911889:256345..256367Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1510915933:256345..256367TCONS_00021172-exon-sc0000379-1510915933:256345..256367Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1575043694:256345..256367TCONS_00021172-exon-sc0000379-1575043694:256345..256367Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1491911889:256787..257831TCONS_00021172-exon-sc0000379-1491911889:256787..257831Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1510915933:256787..257831TCONS_00021172-exon-sc0000379-1510915933:256787..257831Clytia hemisphaericaexon
TCONS_00021172-exon-sc0000379-1575043694:256787..257831TCONS_00021172-exon-sc0000379-1575043694:256787..257831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:252161..257831 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.368022	0	2.46285	5.07378	0.656755	0	3.81242e-05	0.0983932	1.48257	0.552482	0.359073	0.226272	2.42437	1.80786	1.16253	0.737201	0.39927	1.06013	0.177182	0.0821934	0.108322	1.76718	0.000819793	0.505028	3.49568e-07	0.401891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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