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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021163 ID=TCONS_00021163|Name=TCONS_00021163|organism=Clytia hemisphaerica|type=transcript|length=3593bpRun BLAST on NCBI protein sequence of TCONS_00021163-protein >TCONS_00021163-protein ID=TCONS_00021163-protein|Name=TCONS_00021163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1094bp MGKFAILLNLVICFVVFQKVSSKKVTICRGKEQSLVCQEGTGSLLINSAVRun BLAST on NCBI transcript from alignment at sc0000379:179815..202357+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021163 ID=TCONS_00021163|Name=TCONS_00021163|organism=Clytia hemisphaerica|type=transcript|length=22543bp|location=Sequence derived from alignment at sc0000379:179815..202357+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000379:179815..202357+ >TCONS_00021163 ID=TCONS_00021163|Name=TCONS_00021163|organism=Clytia hemisphaerica|type=CDS|length=52560bp|location=Sequence derived from alignment at sc0000379:179815..202357+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021163 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 3.217e-40 Identity = 93/247 (37.65%), Postives = 137/247 (55.47%), Query Frame = 2
Query: 2783 AKAGRWPWQVEIYTSANNHICGGAMITNRWLLTAAHCIDKSNVATASEKYFVVLGEFNRSRNEGHEFKYNIQRVILHPGYDPQTLNAIQHDKDIALMQLDQNVELTSYIGTVCVPNT-QNIDYWDNCVLTGWGKPTYPGS-SAYVLQQGLLNVVTNQECQRKLKEDSVGEPGDEITSNMICGDDKTKSGVSGCQGDSGGPFVCRRKSDNKWYLRGLVSWGSQRCEIKEMYQVLTRVSSFYQWITNNI 3517
A G WPWQV + S+ H CGG++I+ W++TAAHC NV+ ++FVVLGE++RS N ++ R I HP ++ T+N D+ L++L + T+ I VC+ ++ + + CV TGWG+ + G+ + LQQ L +VT +C++ G IT +MIC +G S CQGDSGGP VC++ N W L G+VSWG++ C ++ V TRVS F WI I
Sbjct: 40 AVLGSWPWQVSLQDSSGFHFCGGSLISQSWVVTAAHC----NVSPG--RHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMN-----NDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQYW--------GSSITDSMICAGG---AGASSCQGDSGGPLVCQK--GNTWVLIGIVSWGTKNCNVRAP-AVYTRVSKFSTWINQVI 261 The following BLAST results are available for this feature:
BLAST of TCONS_00021163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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