TCONS_00021118 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021118
Unique NameTCONS_00021118
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021118 ID=TCONS_00021118|Name=TCONS_00021118|organism=Clytia hemisphaerica|type=transcript|length=543bp
CTTAGCCACGGATCACCATACCTGCAGACTGCACAGATTGCGATGCAGTG
GTTGAATTCCAGTACGACGAACCTCGTCAAATGATGGTGTTCACTTTACA
AACAAAACACGCTTGGGTTGCCAGTGCTCAAAGACCTCAATCTGCTGGAG
CTGGCATGGTCAACATCAAAGGTCAATATTGTGTTAAAGATGGAGGCTTC
GGTAGCTTTGATGGAAGCAAATTAATCAAGAATACAGCTCCTTCTTTCTC
AACTGGTTCGGTAGATGGTGTTACGTTGAAATCAACAAAAACTGAGAATG
GTGTCACGACTTGTATATATGAGCGTCCAATCAAACCATCAGATGGAAAT
GCTTATTTACATGATTTGAATGATCCTATGGTTATGGTCGTTGCTTTTGG
AAAGTCTGCATCAGGCAACAGTATAAGCTACCATGATCCTGGTAATTACG
CTCAATCCAAAAGAGCATTCAAACTAACCGAAGCGTCAGCGATCGAAGCT
ACATCAGGAAGGACACTGGCAAAAAAGGAAATTGCACATGGTA
Run BLAST on NCBI

transcript from alignment at sc0000378:47048..53864-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021118 ID=TCONS_00021118|Name=TCONS_00021118|organism=Clytia hemisphaerica|type=transcript|length=6817bp|location=Sequence derived from alignment at sc0000378:47048..53864- (Clytia hemisphaerica)
CTTAGCCACGGATCACCATACCTGCAGACTGCACAGATTGCGATGCAGTG
GTTGAATTCCAGTACGACGAACCTCGTCAAATGATGGTGTTCACTTTACA
AACAAAACACGCTTGGGTTGCCAGTGCTCAAAGACCTCAATCTGCTGGAG
CTGGCATGGTATGGCGTATATTTGCGATCTAAACACTACTATTACATTGC
TATTACTAGCCCTACAGTCTGATATTACGTTCCAGTGGATACCCCTTAAA
GCCACACACCCCTTAAAACCTCTTAGCCACCAAACGTAATTTTAATTATT
GCTGACGTGATTTTCGAAAAAAAAGTTTTTTCGACTAATTTGGGCTAAAA
AACGGCTAAAAAACGGGTTTTTTGGACTTTGAAAAATTGGATTATTAATT
TTTTCTGTTTTTTTTGCATGAAAGTAGGGTACCATCATAGGTAAAAGATG
GCTCAAGCGTGTTTATCTATAAGAATCACTATTAATAAGCATACATGAAT
GTTCTTAGTCAAATTACTCCATTTTTTTATGAGATAGATGTTTCTTTTGC
TCATGAGGGCATACTTTTGAAGAATATGTTTACTTAGACATGAAATTTTT
GTTGCTTCGCGTGTTTTTATAGAAATACTGGCCAAATTGGATATTTTTTT
ATAAGCACATTATCAATTACTTAGGTATTAGNTGCTTCGCGTGTTTTTAT
AGAAATACTGGCCAAATTGGATATTTCTTTATAAGCACATTATCAATTAC
TTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATGATATTT
TGCTCAAAGATGCATAACTATAAACCTTCGAATGTGACGGAGCCCGATTT
TCAAAAAGAAATGTTTTTGGGAAAATTTGGGCCAAAAAACGCATGAAAGT
AGGTAAAAGATGGCTCGAGCAGATTTTTTGTAAAAAAATAATTTTTCGGC
TCAAAAAACACATCTTTATCTATAGTATAAGAATCACTATTAATAAGCAG
ACATTAATGTTCTTAGCCGAATTATTAAATTTTTTGACGAGGTAGATGTT
TTTTTTTGCTCACGAAGCCTTGAATATGAAAGAATATTTCAAGAGCATGA
AATTTTGTTTTCTAAACGTTTTTTTTATAAGAAACAAACGACTAATTTTA
ATAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAATTGTCACGTCAC
GTAGATATTATAAGTGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGT
ATCACTTGTTTTGTTATGAAAAGACAATTACAGTGTCATAAAAATCTGCT
CTTCTATAACAAAATTTGTGCCTTTCTTGTCGAGATGAGCTGGAGTTTTT
ACAAGATACTTCACTAATTGGTCATTTAAAGTGATAGAGATGACGCGTTC
TTTAGAAAAAGTAATAAGATTCTTTTATTACATCTTAACGACCAACCAAA
TCAAATAAGAGCTTGTAAAAACTCCAGCTTATCCCTTCTTGTCTACGCTA
CTGGTACTGTATTGGAATTATAGCAAAGTGAGCTTGGTACAGAGTTTTTC
AATCTTTCAACGTTCAGGTCAACATCAAAGGTCAATATTGTGTTAAAGAT
GGAGGCTTCGGTAGCTTTGATGGAAGCAAATTAATCAAGAATACAGCTCC
TTCTTTCTCAACTGGTTCGGTAAGTGAAAAAACTGTATATAAGATACAGG
GGATTAAGGCGGGGTCAAAAAGCTTGCAACGTTACAAATCATTTCTAGAA
GCTCATTTTGGGCTCAAATGAAGGTAATCAGTAAGTAGTATAAGATTCAG
TCTAGGCAGATGTTAAGAAATTTTGCGTAATTCGCAAAAAAACTCGATTT
TACGTAGATTTTTGCTATTTTGATGATGTCATAAAAATTTAACTTCTAAT
AACTTTTGATTTAAGTATCGAAATTAGTTGAAATTTTGTCCAAAGATGCA
CATTATTAATGTTTTCAGAATAGAAAATTTTTTTTATGAAATTTGATGAC
TTCATCACTTTTCAGCCGAAAAAAACTGAAATCCTTAAAAAATGCTGACT
TCAATATGATTTTAAAATTATATTGATTATTCTATCAAAAGTTATTGGAA
TTTTAATATTTTATGGCGTCATCAAAAAAGCGCAAAATTGAGGATTTTTG
AGAATTACGCAAAATTTCTAAATCAAAAAAACATCTGCCTAGAGTGAGAT
TTTTGCGAATTACGCAAAATTTCTAAATCAAAAAAACATCTGCCTAGAGT
GAATCCTAATCTATTTAGTTATACACTTGGTTTGAGCCCAAAATGAGCTT
ATGAAGTTGATTTGTAACGTTGCAAGAATTTTGACCACCACAAACCCGCC
TTTTATTCCCCTGGAGGGCGCTTATCACGCTCCATTTTCTGTTTTCTCAT
GTTCTGCTTTATCAATAATGTTTGAAGGGGCTCAGTTTCAATTATGAGGC
TTGCAACCCCTCTACCGAGGGGAGCCTTCAATGGTAACGATTTTCTTTTT
GGAAACTATTTTCTGTACAGCTGTAATTGAAATATTTAAACAAAGATAAA
AACGGGCTTTTATCAAGAATTATTGTTGTACCAAGTAGGAAATTAGATGA
AACTGACTGAGACTATGGCGTAATTTTAGGTAGATGGTGTTACGTTGAAA
TCAACAAAAACTGAGAATGGTGTCACGACTTGTATGTAAGTAACGGAAAC
TTTTAATTAATATTCTACGTAGATAATCTAGGACTTTTAGAAGTATTTCT
AATGGTTTTTATTGGATCCACGATAAACCGATTTTACTACCTGGTGCGTC
TGCAAAAAGTTTCTCTCTTTAAAGTTGATTTTCTTGAGGTCTAAAAATTC
TAAAAGAACCATTCCTTTTTCATTGAATAGAAGAAAGATAAACTCAAATT
TTGATGGATCATCTATCAAATTTGGTTCATTCGATCAAAAGTTGTGCTCA
ATAAAGTTCCTTGGCTCAATTGAATGAAAATGTTACTTTCAGAAAGTGCC
CGAAAACGTTAAAAAAAAGTAATGGTTCTTTTAAGAATTTTTAGACCTCG
AGAAAGTTAACTATAAAGAGAGAAACCTTTTCGTGGCGCAACCAGTCTAA
AGGAAAAGATCATTGGAAGGGACGGGATTCGCACCAGGTAGGGTTTGTTG
TGACCAGACATCACTTCTTAAAGGGACATACAAGTACTGACAAAATTTGT
AAACAAACCGTATGCAGCGGGATACAAAATCAAAACAAATGTCACATGTC
AAAATAAAAAATAAAAACAAATATGGTGGATTTTGATTGTTTCAATTGTT
TTACAAGTTTGTTTAAGACACGTGATTTTAATTGTTCTCTTTACTGACAC
GTGGTTCGCGCAATGTTTACATTTTACTACTTTTATGTCCCTTTAATATC
ACATAAACCATAACCTCATGGTGTGAATTGAACTTCCAATCTATTTTAGA
TATGAGCGTCCAATCAAACCATCAGATGGAAATGCTTATTTACATGATTT
GAATGATCCTATGGTTATGGTCGTTGCTTTTGGAAAGTCTGCATCAGGTC
TGTACGAATTACGCTCTCAAAATGGATAGCGAACTTGTTTCCATTAGTTT
CCAACTAGATGCTCTCTAATCCGACGTTTTACTATTCGACAGGCTCCCTT
ATTCGATGAAATTTAAAGTTCCCGTCAACAAGAAACTCTCATAAACAACA
CACCCTTATTCGATAAGCTCCATTATTCGATGAAAATCCAATTCCCCCTG
AAGATCGAATTAGAGAGCGTCAACTATATATCTATATATTAATAGCGGTG
CTTTGTGTGCAATAAAGTAGAAGCCGAAGGCTAGAAGTCAATCTCTTTGG
TAGGATTTGAAGCCAACAAATACTACCAAAGTTGCGCGGCCTTGAGCGGC
TCGCCTGGTTTTTACACAAATGACAGATTGAAACTAAAATTTACCGCTAA
ATTTCGAGAAAAATATCAATCGTAAACAAAGTAGTTGCTAGATTCAATCT
GTCGTCAAAATTACGGCGCATTTTTTACGGCTTCGCTTTTTCTTGCCTGA
GAAAGGTTAGAGATTGTACTCTAGCCCTTCGGGCTTTAAACTCAATGTTT
GTGAGTCTGTGAGTCACCACTTTCGTTTTCGCTTTGTCTTTGTTTTAGAA
TTATGACTTTTAGTCTCTTGCTTCACAAATTTGTTCTATTGGATTCGCGC
CATTTGCAAAAGATTTCGCAAGCAATGTTTTGTTCTCGATAAGTTTGTTT
TGATTGACAGATCGGATAGAGCCTGGTTTAGACTTTATTCAGCCTTTGTT
TTGAAATTTAAGTCCCATCTTCATTTAGTAATTTTAATTTCTGCCCAGCT
TTGCGCGATCCTGTTTTTCTCTTTTCTTTTGTTTGAAATGTTTTCGTATG
TATTTAACGATCGTATTTTATTAATGACATTCGAATTCTTTTCAAAACAA
AACAAGTCTATTTTATAGAAAAGAGATGTAAATCAAAACATAAAAATCAA
AAAGTTTGTCGAAAAATAACAGCATTCAAAGGGCGATAAAAAGCAAGGGA
AGAAATTAGTCGATCTCTTTCTTCATATAAAAACATTCAAGTGGTTGATA
CTGTTAAAAACTGTGTACGTCATTTTACATGTTTAAATTCGAAAAGTTAT
GACAACGGTTTAAAAAAAGCAAATTAGAATTGACTTATTAGTTATCTTTT
TAAATCTGATAAAAACAAAGTTGCACTATTCTTTGTGGCTTTCCCGCTTT
TTCCTAAAGAATTGTCATTTCTACATTGCACTCCTCTTTACCATGATATT
TTCTCAAATTGTCGAAAACTGGACGGCGTATTTAATGCGAGCGAAGCGAG
AAAAAGATCTCCGGGGGAGGACTTTGAAGATATCTTTTCATTCATTTGAT
CGTTTTTTTAAGCCAGCTTCAACATCCAAAGGACTTTTTGTGCGTTCAGC
TACAGCTTAACCGGCGTGCGACGCCGGGTAGCGTCTAGTATAATATAATG
CAACATAGAAATATGCGAAACGATAAAACGACGCTTCCGGAACAAGTAAA
ATGCTTGCAACCATATTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGT
CCTTTAAATTAACCCATGTCCGTTCGTTCGTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTGTTCTCGTATTATT
CTGCATTTTCATACTATTGTTCTTATTTTTCAATTGTCTTATTACATCAA
TCTTCAGGTAGGTCCATTCAGCATGTAGCTTGTTCTACATTAGTTTCTAA
ACAGATATGATGCCTGGTGCTCTCAAAGCATCATAACAAACTAAGCCAAC
ATAGACTGGAGTCGTTTATATTACGTTGAATACAGTAATATTGGTGTTGT
ATTAGAATACGATAATTGTTCCTGGATAATATTAGTTTTAGTCCAACAAT
ACTTTGTGTAATTTAAGAAAAGTATATTTTAAGAGCAGAAACTTTCGCGA
GGTTACAAAATCATGAAATTTCGCGAATTTAACTTTTGGAACGAATTCAA
CCGATATAACGCGAATTTTAGAATGTTATTTCATTTTGCAGGCAAAAAAG
CGATAAAATGCACAAAAACTGAAAACTGAGTAAAAAATAGCAAAAAAAGT
GCACTTTTCGCGGGAGAAACTCGTGTAATTTCTTACTTAGCAGAAATTTT
CACGAAAAAGGGCAAACATCACCAAAATCGCGAAAGTTTCTACCCTATTA
AAGTATTCCATGATTGTATGTATAATTCTTTTACACAGGCAACAGTATAA
GCTACCATGATCCTGGTAATTACGCTCAATCCAAAAGAGCATTCAAACTA
ACCGAAGCGTCAGCGATCGAAGCTACATCAGGAAGGACACTGGCAAAAAA
GGAAATTGCACATGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011831XLOC_011831Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021118-exon-sc0000378-1575043694:53707..53864TCONS_00021118-exon-sc0000378-1575043694:53707..53864Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1575043694:52196..52297TCONS_00021118-exon-sc0000378-1575043694:52196..52297Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1575043694:51180..51235TCONS_00021118-exon-sc0000378-1575043694:51180..51235Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1575043694:50318..50415TCONS_00021118-exon-sc0000378-1575043694:50318..50415Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1575043694:47048..47176TCONS_00021118-exon-sc0000378-1575043694:47048..47176Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1510915933:53707..53864TCONS_00021118-exon-sc0000378-1510915933:53707..53864Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1510915933:52196..52297TCONS_00021118-exon-sc0000378-1510915933:52196..52297Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1510915933:51180..51235TCONS_00021118-exon-sc0000378-1510915933:51180..51235Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1510915933:50318..50415TCONS_00021118-exon-sc0000378-1510915933:50318..50415Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1510915933:47048..47176TCONS_00021118-exon-sc0000378-1510915933:47048..47176Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1491911889:53707..53864TCONS_00021118-exon-sc0000378-1491911889:53707..53864Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1491911889:52196..52297TCONS_00021118-exon-sc0000378-1491911889:52196..52297Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1491911889:51180..51235TCONS_00021118-exon-sc0000378-1491911889:51180..51235Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1491911889:50318..50415TCONS_00021118-exon-sc0000378-1491911889:50318..50415Clytia hemisphaericaexon
TCONS_00021118-exon-sc0000378-1491911889:47048..47176TCONS_00021118-exon-sc0000378-1491911889:47048..47176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:47048..53864 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.14533	0.725074	0.601343	0	0	0	0	0	1.77754	1.55222	1.45753	1.27336	15.7195	11.4796	18.8409	16.7261	3.84498	1.66451	3.12777	9.33444	0.718902	0.751404	0.974325	0.602126	7.38428	5.59801	0	0.239879	0	0.960945
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021118 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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