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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021102 ID=TCONS_00021102|Name=TCONS_00021102|organism=Clytia hemisphaerica|type=transcript|length=1870bp
AAGCGTTAACAGAGCTTCCCATAAGATTATCATTGCTACTAATAAGAGGT
TTAGTCATCTAAAAGATTATGTGGATCAAACAGATCGGAAAATCTTGAAA
CAGAACATGGAAAACCATTACCTTGGACAACAAGAAAATTGGGCAAATTG
TTTACTAAGAAAATCACTCTGGGATTCGAACAAATGTCAAAAAGATGTAG
AACAAGATGTTAATGGCTTGAAAAACTTCTTCGTGAACAAAAGGATGTAC
ACCTTATATCCAAGGAAAAAGATGAGTGTCGaagatatcaaatttttgga
aacacAACTTCCCGTAACTAGAACCTGGGCTGTATTCCATCTTCAAATCA
TTGCTGTTTTACTTCGTACTttggagaaaatgaaaaaagatccCAAGCGA
GCTCACAAGAAAAAATACTACCGTAATCAGTATACACTTTACAAAGATAA
GTTGCGTACTAACGGTCAATTCTATATGGGATACATGGAATGGGCGTTGA
AAAAGATTCGGAAAGCTCGCATAGTTGAAAACCAATTTGACGAGGAGCCA
CAATGTACAAAATTTGAGGACGAATTTGATGGGAGGACGTATGGACAATG
TTTGCAATATTCACAAAAGAAATGCACATTCAAGCCAACAAAGTTCAGCC
ACAAATTCTGCGACTTGGATATCACTATGTCATGTTCGGATTgtgtttgt
aaagtttgtacggGTGTTTTTGGTATTTGTAGAACCGACACATGGATTAC
AAAGTCTTTGCACACTAATGTATTCTCTCATATCAAAGATAGAATGGATG
AAATTTCACAGAAATATATTGAAGATTTGAAACCACGTTTTAATGCTTAT
TGGAGCAGAGAGGTTGGAAGACATATCAGTGTCTTGAAAGATATCTTTAA
CAGTCCAAAATTAAATCTGGATGAAGGGAAATCGGGTAATAGAGATGCTA
TTGAAGATAATGAAGATGATTTTGGCAATGGTTTATTTGATGATGTTAAC
GAACAGAGCGGTAGCGGTAAAGAAGAGATTGGGGAGGAGTCTGGGGATAG
TGAAGATAATGGAGATAATGTTATTGGTGAAACACGTGGAAAGTCGGATA
ATGATAAATTCAAAAATGTACCAGAAGAGGTGAAAGAAAGAATTCGTGAA
ATGGCGAAGATGGAGAAAGAAAGTGAAGAACAGGATGATGAGATATTACA
AGGAGTGACTGGTAAAGAAACATTCACCGAATACCTCAGAAAAGTCGATC
AGAATGTCAAAAACCATTACAAGAATAAAAACcagaaacaaaagaacaaa
caatAACTCATCCCTTAATTGGTTTTTGTTTTaagtattacttcgaataa
acgccccctttttttaaagaccCGCCTCGAATAAatgcccccttctttta
aaggcccgcctcgaataaacgcccccttcttttaaaggcCCGCCTCGAAT
AAATGCCCCttcctaaaagaaaaattttcaataaacgccccttcAAATAA
ATACCTCCCTTCTAGGAGAGAAATTATATGAACGCGAGAACTTAAATATG
TGTTTATgtagttattattattatttcagTATTTAAACTCATTTTCCCTA
TTTTTACATCGCTTACTCGTCCAGGGTGTTTATTCGATATAATGCGGTAT
GTGATACAGATCGGTCTCAAAATCCATGACTGTTTAGCAAGTTTTTGCTT
AAATATTGTATAGCACAAAAGGGCATTATTTACTATATTTAATTTTGGTA
TGAGTTTAAAGTTTGTGATACATAACAAAAAAATTAGATTAGCTAAATTT
TGCTTAGTGGCAGCGGTTATCTGTAGTTTGATTCGTTTTGTTTTTGGTGG
CCGCCTGTAATTTACTAAGa Run BLAST on NCBI transcript from alignment at sc0000378:243089..246292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021102 ID=TCONS_00021102|Name=TCONS_00021102|organism=Clytia hemisphaerica|type=transcript|length=3204bp|location=Sequence derived from alignment at sc0000378:243089..246292+ (Clytia hemisphaerica)
AAGCGTTAACAGAGCTTCCCATAAGATTATCATTGCTACTAATAAGAGGT
TTAGTCATCTAAAAGATTATGTGGATCAAACAGATCGGAAAATCTTGAAA
CAGAACATGGAAAACCATTACCTTGGACAACAAGAAAATTGGGCAAATTG
TTTACTAAGAAAATCACTCTGGGATTCGAACAAATGTCAAAAAGATGTAG
AACAAGATGTTAATGGCTTGAAAAACTTCTTCGTGAACAAAAGGATGTAC
ACCTTATATCCAAGGAAAAAGATGAGTGTCGaagatatcaaatttttgga
aacacAACTTCCCGTAACTAGAACCTGGGCTGTATTCCATCTTCAAATCA
TTGCTGTTTTACTTCGTACTttggagaaaatgaaaaaagatccCAAGCGA
GCTCACAAGAAAAAATACTACCGTAATCAGTATACACTTTACAAAGATAA
GTTGCGTACTAACGGTCAATTCTATATGGGATACATGGAATGGGCGTTGA
AAAAGATTCGGAAAGCTCGCATAGTTGAAAACCAATTTGACGAGGAGCCA
CAATGTACAAAATTTGAGGACGAATTTGATGGGAGGACGTATGGACAATG
TTTGCAATATTCACAAAAGAAATGCACATTCAAGCCAACAAAGTTCAGCC
ACAAATTCTGCGACTTGGATATCACTATGTCATGTTCGGATTgtgtttgt
aaagtttgtacggGTGTTTTTGGTATTTGTAGAACCGACACATGGATTAC
AAAGTCTTTGCACACTAATGTATTCTCTCATATCAAAGATAGAATGGATG
AAATTTCACAGAAATATATTGAAGATTTGAAACCACGTTTTAATGCTTAT
TGGAGCAGAGAGGTTGGAAGACATATCAGTGTCTTGAAAGATATCTTTAA
CAGTCCAAAATTAAATCTGGATGAAGGTATGATATCTTTTGTATAGTttg
atagatagagtcgatattttacgtgcaTAGTTCCACGGCCAGCcaccggc
tcggctatctatgagctgaacggaacattgaaaggagcggggattcgaac
catGAATCCCTGGTTAGAAATGCTGACACCTTTGACAACTTGGCCATTTT
GTGTCTTCCTTTTCTTCATATCTTTTTTTCTAGTAAACCATCGTATTTTA
AATCAGATTTGTGGTGCTAGTTGCATTCACTTTCAGTTAGACTTCAAAAA
ACAGTGGCCATATTCTCATCAAATTCAGAGCTTGCAAAATTACACTGGGG
TTTATTGTTTTCTGATTTTAGGGAAATCGGGTAATAGAGATGCTATTGAA
GATAATGAAGATGATTTTGGCAATGGTTTATTTGATGATGTTAACGAACA
GAGCGGTAGCGGTAAAGAAGAGATTGGGGAGGAGTCTGGGGATAGTGAAG
ATAATGGAGATAATGTTATTGGTGAAACACGTGGAAAGTCGGATAATGAT
AAATTCAAAAATGTACCAGAAGAGGTTAGAAAACATAATTGTAGTAAGCA
ACATATTTAAGCCATTTCGATATCATTAATGAAGTAATAATTAtcgcatt
ttttgaaaatgccgaAAGTTTGACCCCCCtaatctttttttgaagtttta
tattgtttttttcttaaaatttgagAGACAGATTTCTTTTGAGCACAAgg
actttttttcaaaactgcctTTATCGTGTATTTAACAGATTGGTCCAGAA
AATAATCATGGGTGGGGTATTAATGATAAAAGCCTTACAACCAAAATTTG
TGCAAAATCGGACCAggttatgctgaaagtgagcatttaGAATAAAATAC
GGACCAGGTTATGCTGAAACGACGCACTTGAccaaaattataacaatttc
ATTGAATTGTAAATTGACTATAATCAGATGGTGCTGCCATTAGGGTTACT
TTCcgaaaactccgatcaaagatgtcTGATATAGCTTTGTCCAGGATTTA
GACGGGTCCAAAAGGATGTAATAATTAACGAGGAataataccttaagtgg
attaattttcgcgtggacaaaatttcgcgaatggaagattgaaaattttc
gcgtggaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNaattctaaaaatttcgcgtggacaaaat
ttcgcgaaaatggccaaaatacgcgaaaatcgcgaaaattaatccacgcg
aaaattaatccacttaaggtacatGGTTTTAGTACCCAATACTTTCACCC
TCCAAACCATGTTTCTACTAATACAAATCGTATATAATATCATTCACTTT
CTTATTATTACAGGTGAAAGAAAGAATTCGTGAAATGGCGAAGATGGAGA
AAGAAAGTGAAGAACAGGATGATGAGATATTACAAGGAGTGACTGGTAAA
GAAACATTCACCGAATACCTCAGAAAAGTCGATCAGAATGTCAAAAACCA
TTACAAGAATAAAAACcagaaacaaaagaacaaacaatAACTCATCCCTT
AATTGGTTTTTGTTTTaagtattacttcgaataaacgcccccttttttta
aagaccCGCCTCGAATAAatgcccccttcttttaaaggcccgcctcgaat
aaacgcccccttcttttaaaggcCCGCCTCGAATAAATGCCCCttcctaa
aagaaaaattttcaataaacgccccttcAAATAAATACCTCCCTTCTAGG
AGAGAAATTATATGAACGCGAGAACTTAAATATGTGTTTATgtagttatt
attattatttcagTATTTAAACTCATTTTCCCTATTTTTACATCGCTTAC
TCGTCCAGGGTGTTTATTCGATATAATGCGGTATGTGATACAGATCGGTC
TCAAAATCCATGACTGTTTAGCAAGTTTTTGCTTAAATATTGTATAGCAC
AAAAGGGCATTATTTACTATATTTAATTTTGGTATGAGTTTAAAGTTTGT
GATACATAACAAAAAAATTAGATTAGCTAAATTTTGCTTAGTGGCAGCGG
TTATCTGTAGTTTGATTCGTTTTGTTTTTGGTGGCCGCCTGTAATTTACT
AAGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021102-exon-sc0000378-1491911889:243089..244014 | TCONS_00021102-exon-sc0000378-1491911889:243089..244014 | Clytia hemisphaerica | exon |
| TCONS_00021102-exon-sc0000378-1510915933:243089..244014 | TCONS_00021102-exon-sc0000378-1510915933:243089..244014 | Clytia hemisphaerica | exon |
| TCONS_00021102-exon-sc0000378-1575043694:243089..244014 | TCONS_00021102-exon-sc0000378-1575043694:243089..244014 | Clytia hemisphaerica | exon |
| TCONS_00021102-exon-sc0000378-1491911889:244360..244562 | TCONS_00021102-exon-sc0000378-1491911889:244360..244562 | Clytia hemisphaerica | exon |
| TCONS_00021102-exon-sc0000378-1510915933:244360..244562 | TCONS_00021102-exon-sc0000378-1510915933:244360..244562 | Clytia hemisphaerica | exon |
| TCONS_00021102-exon-sc0000378-1575043694:244360..244562 | TCONS_00021102-exon-sc0000378-1575043694:244360..244562 | Clytia hemisphaerica | exon |
| TCONS_00021102-exon-sc0000378-1491911889:245552..246292 | TCONS_00021102-exon-sc0000378-1491911889:245552..246292 | Clytia hemisphaerica | exon |
| TCONS_00021102-exon-sc0000378-1510915933:245552..246292 | TCONS_00021102-exon-sc0000378-1510915933:245552..246292 | Clytia hemisphaerica | exon |
| TCONS_00021102-exon-sc0000378-1575043694:245552..246292 | TCONS_00021102-exon-sc0000378-1575043694:245552..246292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000378 | supercontig | sc0000378:243089..246292 + |
Blast
The following BLAST results are available for this feature:
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