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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021099 ID=TCONS_00021099|Name=TCONS_00021099|organism=Clytia hemisphaerica|type=transcript|length=494bp
AACAATTTAAAGTCAAATCCCAAAAAAGGTACAacattttttgacgttct
tatttAAATGTAATCGAATGAAGTCTGACTCTTTTAGATCACTTTCTCAT
TATAGGATGAGGGTATTGAGAATATTTCTAGAGTTCCTCTTCATTGTGAC
ATGTGTGGATATGGGATATGGGTTTTTCAACATGGTCCCAACCAACACTC
AAGGTTACCTTCAGATGAAACCAAACAAAGAAGAGCGAAAAGGACATTGT
GAATTTGACAAGTATGATTTGGATGatgaaagaattgaaatccGAAACAT
TCCAAGTATTACTGCAAGAGTTCCAACAGCATCCTTGGCTGATTCTTTGG
GTTCATTATCCCCTGAAGCCATGAAAAAGTTGGGAATCGACCCAGAAAAG
TGGATAAAATTTTCAGTAGCCGTTAAAGACGCAGCCGAAAAGGCATCCAT
GGCGGCTCATCCAATCTTGAAACCAGTTCTTAATCAAATTGTCA Run BLAST on NCBI protein sequence of TCONS_00021099-protein >TCONS_00021099-protein ID=TCONS_00021099-protein|Name=TCONS_00021099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MKSDSFRSLSHYRMRVLRIFLEFLFIVTCVDMGYGFFNMVPTNTQGYLQM
KPNKEERKGHCEFDKYDLDDERIEIRNIPSITARVPTASLADSLGSLSPE
AMKKLGIDPEKWIKFSVAVKDAAEKASMAAHPILKPVLNQIV Run BLAST on NCBI transcript from alignment at sc0000378:240719..243036+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021099 ID=TCONS_00021099|Name=TCONS_00021099|organism=Clytia hemisphaerica|type=transcript|length=2318bp|location=Sequence derived from alignment at sc0000378:240719..243036+ (Clytia hemisphaerica)
AACAATTTAAAGTCAAATCCCAAAAAAGGTACAacattttttgacgttct
tatttAAATGTAATCGAATGAAGTCTGACTCTTTTAGATCACTTTCTCAT
TATAGGATGAGGGTATTGAGAATATTTCTAGAGTTCCTCTTCATTGTGAC
ATGTGTGGATATGGGATATGGGTTTTTCAACATGGTCCCAACCAACACTC
AAGGTTACCTTCAGATGAAACCAAACAAAGAAGAGCGAAAAGGACATTGT
GAATTTGACAAGTATGATTTGGATGatgaaagaattgaaatccgTAAGAA
gttccttgtttttttttcacatataAATTCCCCGGGGGGGGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNactagtttcttaaaaaaaaaagacgtgtagcCTTTCCC
GATTTCCTGAATAAATCAGCTAAGAAATAAAGATAAGAATAAGTGTTGTT
AATTGTCGCACTGGCCTTATCGGTCCCTTTTACGATGTTTCTTATTACAC
AAatgctcaattttttttcaattttaagccCGACTCCAATTTAATTTCGA
TCCCTTAGAGAGTGGTCAGTATCAAATAGGGTGAGGTAGAGGATATTTTC
AtaaattcgagaaaaaaaattcgcacACCCCCCCTTGATATCCTATATTT
TTGGTACCCCCTAATATAGGCCACTGTTCTTTGACCTTTCAAAACGAATG
ATTTTTCCAGAGGCGTTGCCACGAgtcttaaaaataataattttgttCTC
GTAACTTAAGTGCCGCAGGCGAAGAGTTTGCTCTAAGCAAGCataataag
cataaaaaagGCAAAGTTAGCGAGAATAAGCTCACAAAAAATgcagaaag
catgaaatttcatgtcactgaaagttttctttgtaattttggcACAACag
gcaaaatttttttggtctAAGAAAAGTCAGACAGCTTAAAGGAGGCCTGC
AAAAAGGTCAAAGGTAGCCAGAAAGCAAAAGCTGCAAGCACCTTCACATT
CCATTGGGTAAACTTTGACCTTTTCAGtcaactttcttttcttttttttt
tcttccccgGTGGATACACTGCTTGCTAATACATTTGAAATCTAGATTAA
TGAAATTGGAACAACCCcctaaagaaattaattttgtttaaGACCCCCAC
TAAGGGTGGCAAAGATTTTTGACACCTCCTGGAATCCTCCTCCCCCCCTA
GTAAAttctttctgaccactcccttacgATAGCCCTTATTAAGCCAGCGA
CGAAAAAATAACACTGGTAAGGCGATATTCGATCATGCAGAAAGTAAGTT
TGGATTCTATTTTCTAGGAAACATTCCAAGTATTACTGCAAGAGTTCCAA
CAGCATCCTTGGCTGATTCTTTGGGTTCATTATCCCCTGAAGCCATGAAA
AAGTTGGGAATCGACCCAGAAAAGTGGATAAAATTTTCAGTAGCCGTTAA
AGACGCAGCCGAAAAGGCATCCATGGCGGCTCATCCAATCTTGAAACCAG
TTCTTAATCAAATTGTCA Coding sequence (CDS) from alignment at sc0000378:240719..243036+ >TCONS_00021099 ID=TCONS_00021099|Name=TCONS_00021099|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000378:240719..243036+ (Clytia hemisphaerica)
ATGAAGTCTGACTCTTTTAGATCACTTTCTCATTATAGGATGAGGGTATT
GAGAATATTTCTAGAGTTCCTCTTCATTGTGACATGTGTGGATATGGGAT
ATGGGTTTTTCAACATGGTCCCAACCAACACTCAAGGTTACCTTCAGATG
AAACCAAACAAAGAAGAGCGAAAAGGACATTGTGAATTTGACAAGTATGA
TTTGGATGatgaaagaattgaaatccGAAACATTCCAAGTATTACTGCAA
GAGTTCCAACAGCATCCTTGGCTGATTCTTTGGGTTCATTATCCCCTGAA
GCCATGAAAAAGTTGGGAATCGACCCAGAAAAGTGGATAAAATTTTCAGT
AGCCGTTAAAGACGCAGCCGAAAAGGCATCCATGGCGGCTCATCCAATCT
TGAAACCAGTTCTTAATCAAATTGTCATGAAGTCTGACTCTTTTAGATCA
CTTTCTCATTATAGGATGAGGGTATTGAGAATATTTCTAGAGTTCCTCTT
CATTGTGACATGTGTGGATATGGGATATGGGTTTTTCAACATGGTCCCAA
CCAACACTCAAGGTTACCTTCAGATGAAACCAAACAAAGAAGAGCGAAAA
GGACATTGTGAATTTGACAAGTATGATTTGGATGatgaaagaattgaaat
ccGAAACATTCCAAGTATTACTGCAAGAGTTCCAACAGCATCCTTGGCTG
ATTCTTTGGGTTCATTATCCCCTGAAGCCATGAAAAAGTTGGGAATCGAC
CCAGAAAAGTGGATAAAATTTTCAGTAGCCGTTAAAGACGCAGCCGAAAA
GGCATCCATGGCGGCTCATCCAATCTTGAAACCAGTTCTTAATCAAATTG
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021099-exon-sc0000378-1491911889:240719..241011 | TCONS_00021099-exon-sc0000378-1491911889:240719..241011 | Clytia hemisphaerica | exon |
| TCONS_00021099-exon-sc0000378-1510915933:240719..241011 | TCONS_00021099-exon-sc0000378-1510915933:240719..241011 | Clytia hemisphaerica | exon |
| TCONS_00021099-exon-sc0000378-1575043694:240719..241011 | TCONS_00021099-exon-sc0000378-1575043694:240719..241011 | Clytia hemisphaerica | exon |
| TCONS_00021099-exon-sc0000378-1491911889:242836..243036 | TCONS_00021099-exon-sc0000378-1491911889:242836..243036 | Clytia hemisphaerica | exon |
| TCONS_00021099-exon-sc0000378-1510915933:242836..243036 | TCONS_00021099-exon-sc0000378-1510915933:242836..243036 | Clytia hemisphaerica | exon |
| TCONS_00021099-exon-sc0000378-1575043694:242836..243036 | TCONS_00021099-exon-sc0000378-1575043694:242836..243036 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000378 | supercontig | sc0000378:240719..243036 + |
Blast
The following BLAST results are available for this feature:
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