TCONS_00021097 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021097
Unique NameTCONS_00021097
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021097 ID=TCONS_00021097|Name=TCONS_00021097|organism=Clytia hemisphaerica|type=transcript|length=1343bp
TAAAAGGCCAACGAAAACTTTGTAAAACGCACTGAAGGAGTTCAAAGAAC
ACCGAAATGGCGTTAAAAAGATTTCAAGCGGTTTTTATGCTGATAATTCT
ACAATTAATCAATTGAGCAGAAGCAGCGCGTAATACCACAACAATCGATG
ACTTGGTTGAGCAGTCCATCTCAAATCTCCAACAAATCAAACTCAAGTAC
AAATCATTGGCACTCATAAGTAAACTTTACGGGCACTGTGGTCCCTGCAA
GCCGACCCCTAAAAGTGAATATTGTGACTGCACCAATGCCAACCCTATGG
AAGATTGTCTCAAATTTCTACAAGCTGGCTATAAAGTGAATGGTATCTAC
CGCCTGAAAGCTGCCGGATTTAACAGACCGCATGTCTTCTGTGATCAAAC
AACTCTTGGTGGTGGTTGGACAACTTTTTTGAGACGAAAGGATGGATCTG
TCAACTTCAAACAAAATTGGAAAATGTACAGGAATGGCTTCGGTGAATTG
ACCAGTGAGTTTTGGCTTGGAAATGAAATCGTCCATGGTCTGACCGAATC
ATCAGTTGCACCAAAAAAGTCCGAATTGCTTATCAATATGCAAATCAAAG
GAGCAAAGAGTCCCACTTATGCAAAATATGACAACTTTGAAATTGGAGAT
GAGGCAAGCAAATATATTTTGAAGTTCAGCGGTGTATCAGGCAATGCATC
TCATCTGACAGGAGACAACTCCCTAAATCACAGTAACAACAGGAGATTCT
CCACTATTGATGCTGACAACGACGACAATTCTAGCAGTTGTAGCAAAAGT
TATGGAAGTGTTGGATGGTGGTTCGGGAATTGTGTCTATACAGTGTTGAC
CGCCGACTACAAAAACATTTATTGGCACGGCTCTTCTGCGCTCGCAAACT
TCGCCGAAATGAAACTTCGCAGAAAGCTGTAATACTAAAAggtataaaaa
attatgttgacCGTCCGGTTACTCTGccttacttcccaattctatgaTTC
ACGCCCTACTTTAGTTAGAGAAATAATTAACTCGAAAATCAGCCCTATTC
CTAAAATTGAGTCTCCCGCTGATCCGAGCGACTACCGTCCAATCTCCATA
TTACCGATCCTTTCAAAAGTATACGAGAGACTGATTATGACACAAATGAC
AAACTATCTAGAAAGTGAAGAACTACTATCAAAACATCAATCTGGTTTTC
GAAAGGGTCACTGCACAATAACCACctgcatcaaaatcaaaaacgaCATC
CTGAAAGCGATGAATCGAGGCGAAATCACTCTTGCAGTTCTCGCTGACTT
TTCAAAAGCATTTGATACAGTTGATTTTGAACTCTTAtcaaac
Run BLAST on NCBI

transcript from alignment at sc0000378:208606..209948+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021097 ID=TCONS_00021097|Name=TCONS_00021097|organism=Clytia hemisphaerica|type=transcript|length=1343bp|location=Sequence derived from alignment at sc0000378:208606..209948+ (Clytia hemisphaerica)
TAAAAGGCCAACGAAAACTTTGTAAAACGCACTGAAGGAGTTCAAAGAAC
ACCGAAATGGCGTTAAAAAGATTTCAAGCGGTTTTTATGCTGATAATTCT
ACAATTAATCAATTGAGCAGAAGCAGCGCGTAATACCACAACAATCGATG
ACTTGGTTGAGCAGTCCATCTCAAATCTCCAACAAATCAAACTCAAGTAC
AAATCATTGGCACTCATAAGTAAACTTTACGGGCACTGTGGTCCCTGCAA
GCCGACCCCTAAAAGTGAATATTGTGACTGCACCAATGCCAACCCTATGG
AAGATTGTCTCAAATTTCTACAAGCTGGCTATAAAGTGAATGGTATCTAC
CGCCTGAAAGCTGCCGGATTTAACAGACCGCATGTCTTCTGTGATCAAAC
AACTCTTGGTGGTGGTTGGACAACTTTTTTGAGACGAAAGGATGGATCTG
TCAACTTCAAACAAAATTGGAAAATGTACAGGAATGGCTTCGGTGAATTG
ACCAGTGAGTTTTGGCTTGGAAATGAAATCGTCCATGGTCTGACCGAATC
ATCAGTTGCACCAAAAAAGTCCGAATTGCTTATCAATATGCAAATCAAAG
GAGCAAAGAGTCCCACTTATGCAAAATATGACAACTTTGAAATTGGAGAT
GAGGCAAGCAAATATATTTTGAAGTTCAGCGGTGTATCAGGCAATGCATC
TCATCTGACAGGAGACAACTCCCTAAATCACAGTAACAACAGGAGATTCT
CCACTATTGATGCTGACAACGACGACAATTCTAGCAGTTGTAGCAAAAGT
TATGGAAGTGTTGGATGGTGGTTCGGGAATTGTGTCTATACAGTGTTGAC
CGCCGACTACAAAAACATTTATTGGCACGGCTCTTCTGCGCTCGCAAACT
TCGCCGAAATGAAACTTCGCAGAAAGCTGTAATACTAAAAggtataaaaa
attatgttgacCGTCCGGTTACTCTGccttacttcccaattctatgaTTC
ACGCCCTACTTTAGTTAGAGAAATAATTAACTCGAAAATCAGCCCTATTC
CTAAAATTGAGTCTCCCGCTGATCCGAGCGACTACCGTCCAATCTCCATA
TTACCGATCCTTTCAAAAGTATACGAGAGACTGATTATGACACAAATGAC
AAACTATCTAGAAAGTGAAGAACTACTATCAAAACATCAATCTGGTTTTC
GAAAGGGTCACTGCACAATAACCACctgcatcaaaatcaaaaacgaCATC
CTGAAAGCGATGAATCGAGGCGAAATCACTCTTGCAGTTCTCGCTGACTT
TTCAAAAGCATTTGATACAGTTGATTTTGAACTCTTAtcaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011828XLOC_011828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021097-exon-sc0000378-1491911889:208606..209948TCONS_00021097-exon-sc0000378-1491911889:208606..209948Clytia hemisphaericaexon
TCONS_00021097-exon-sc0000378-1510915933:208606..209948TCONS_00021097-exon-sc0000378-1510915933:208606..209948Clytia hemisphaericaexon
TCONS_00021097-exon-sc0000378-1575043694:208606..209948TCONS_00021097-exon-sc0000378-1575043694:208606..209948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:208606..209948 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.420082	0.374745	0.442371	0.989683	0.30418	0.303874	0.494742	0.649598	0.448183	0.36384	0.633928	0.804009	1.21513	1.50359	4.58791	6.26244	1.66456	2.46493	3.36245	2.78916	1.49202	1.39889	3.44085	2.06695	3.16008	3.72905	1.92028	1.87859	10.1353	11.1536
Blast
[Close]
BLAST of TCONS_00021097 vs. Swiss-Prot (Human)
Match: TENA (Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 8.705e-27
Identity = 82/218 (37.61%), Postives = 114/218 (52.29%), Query Frame = 3 
Query:  300 EDCLKFLQAGYKVNGIYRLKAAGFNRP--HVFCDQTTLGGGWTTFLRRKDGSVNFKQNWKMYRNGFGELTSEFWLGNEIVHGLTESSVAPKKSELLINMQIKGAKSPTYAKYDNFEIGDEASKYILKFSGVSGNASHLTGDNSLNHSNNRRFXXXXXXXXXXXXXXXXXXXXVGWWFGNCVYTVLTADYKN---------IYWHGSSALANFAEMKLR 920
            +DC + +  G   +G+Y +   G       VFCD T+ GGGW  FLRRK+G  NF QNWK Y  GFG+   EFWLG + ++ +T    A  + EL ++++  G  +  +A YD F +GD  ++Y LK  G SG A    GD S+ + N R FST D D D   ++C+ SY    +W+ NC    L   Y +          +W G      FAEMKLR
Sbjct: 1982 KDCSQAMLNGDTTSGLYTIYLNGDKAEALEVFCDMTSDGGGWIVFLRRKNGRENFYQNWKAYAAGFGDRREEFWLGLDNLNKIT----AQGQYELRVDLRDHGETA--FAVYDKFSVGDAKTRYKLKVEGYSGTA----GD-SMAYHNGRSFSTFDKDTDSAITNCALSYKG-AFWYRNCHRVNLMGRYGDNNHSQGVNWFHWKGHEHSIQFAEMKLR 2187
The following BLAST results are available for this feature:
BLAST of TCONS_00021097 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENA8.705e-2737.61Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3[more]
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