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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021094 ID=TCONS_00021094|Name=TCONS_00021094|organism=Clytia hemisphaerica|type=transcript|length=1879bp
cagccaaaaagtttaccagaaataaaaaaaatgtttaataaatctaaatc
aaaaagaaattatcGATCACGGAAACAACAAGAGCAAACAAATGAAGAAT
CTGAAGAAACTAAACAGACCGAAAATGAAGATGATGTTGATGGGACAGAA
GAAggggaagaagaagaaagtgtTTTAACTTCATTACAAGAACGCAAAGA
ACTGCAAAGTTTTCGGAAAAGACAAACAGGTGTTAGTGCCGAATCGCTAC
TTGTAGGTGAAAAAGTTGAACAGAAAAAAGAAGGAGGTATCTCTGAtcct
tttaaaatcaaatcagGCGGAGGACTAACCGAGATGTCGGCAACAGCTAA
AAAAGTGACACAAGTTTCAGAGCTAGGTACAGCGTTTTCAACTGAAACTA
ATCAGAGAGACGAGGATGttcaattgttgaaatatattgaagaAGGTTTG
AAGAAGAAACGTGGTGCTGatgaagaaacaacatcaaataatgaaatgaa
GATGTCATCTAAGGAGAGTCAACTATTCCAAGTACCAGACAACATCAATG
TCAAATCAAAGATCATGAAATCTGAAGAAATGTTATCAAGTCAAATGTTA
TCTGGTATTCCAGAAGTTAATCTAGGAATCGAAGCGAAAATCAAGAATAT
TGAAGCAACAGAAGAAGCCAAAATGAAGATGATTGATGACAGTAAAAACA
AACGGCGTGAAAGCTCAGATTTCGTGCCTACTAACATGGCATCAAACTTT
ATGCACCACAATCGGTTTTATAACGAGAAAGCTATTGTTGATAAGGAGCG
AAAGAAagagcaaaagaaaaaagaattagaAAGCGTAACTGTTGTTGATA
AAGGACCAACCGTTGGTAAAGAAATTGTTGAGAATGATGTCGATACTAAG
TTTATGAACAAAGCAATGAATGCAAGTCAAAATAAAAGGAAAGATAAACC
TTCAGATACTGTCGATGATTATATgtttgaaaactttaaaaagaaagCGA
AAGAAGGCCGTTGGAGGTGATGTTTGAGTTCGGAATGGAACGATCTGTCT
ATGACTTGGAGAATGAGGGATGGATCAGGATTTTCATTACTTTAGGTGTG
TGAACTTTCACGAGGttgaaaaatcgcgaaatttacgatATGTTTTGTTT
GCGAATTTGAGGATGAAAAGGGAAAAATTTTTAATGTagatattttttag
cttttttaatGTACAAGATATAGAATCAGTTAATGATTCTTAGACAAACT
TTATTCATGAAAACGTATTTATTAATAACaactacagtatgtggccccca
aaacgtcgatcaaatttaaaacttctctcaaatctagaggaagagaggtt
ttacaaaaatttttgctgcatgaaaaactttaacatctctactttatttt
ccggaagttctttttcaaaattttcaatttcaaaaatatttttcaatcgc
ttaaagataggtagcttttttctaagggccaccaaaacggaggtttgcaa
ttttagctatttctcgagatatctttaagatatgaatacaaaattttgac
catagtttggaaatgtgatttagagggttttgggcataattttttttgat
aaaacttttacagtatacccctggttgtcaaaatacaggtttggggcccc
caaaacggaggtgtagttaaaatcaaattattaagcccagtggtaaaagg
gggagaaactatgaacatatttgtgttttccattaaatttacgacccgat
gcatgtaaaatttatgatttttataaaatatttcaagatttttgatgata
caaagtccaaactgaaaatttagaaattttcaaaatgacaattttgattt
aacaacgtcttaatcaagtttctgaaaac Run BLAST on NCBI transcript from alignment at sc0000378:135691..139766+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021094 ID=TCONS_00021094|Name=TCONS_00021094|organism=Clytia hemisphaerica|type=transcript|length=4076bp|location=Sequence derived from alignment at sc0000378:135691..139766+ (Clytia hemisphaerica)
cagccaaaaagtttaccagaaataaaaaaaatgtttaataaatctaaatc
aaaaagaaattatcGATCACGGAAACAACAAGAGCAAACAAATGAAGAAT
CTGAAGAAACTAAACAGACCGAAAATGAAGATGATGTTGATGGGACAGAA
GAAggggaagaagaagaaagtgtTTTAACTTCATTACAAGAACGCAAAGA
ACTGCAAAGTTTTCGGAAAAGACAAACAGGTGTTAGTGCCGAATCGCTAC
TTGTAGGTGAAAAAGTTGAACAGAAAAAAGAAGGAGGTATCTCTGAtcct
tttaaaatcaaatcagGCGGAGGACTAACCGAGATGTCGGCAACAGCTAA
AAAAGTGACACAAGTTTCAGAGCTAGGTACAGCGTTTTCAACTGAAACTA
ATCAGAGAGACGAGGATGttcaattgttgaaatatattgaagaAGGTTTG
AAGAAGAAACGTGGTGCTGatgaagaaacaacatcaaataatgaaatgaa
GTGAGTTTTCATGTTTTCGTAACGTAACACTGTTCTTAATTATAATCTTA
AAGCATATCTTAGCTCAGAATTTTGTATTAGAATGACTCTTATAatcttt
taagtttttaagcGAACTAACTCAGATGcttaatttcaaaaaagaaatgt
aaTCCTTAGAAGGaatgaattcttccttttaggTTCTTTGATTTGCACTG
CTCTTTGATTTGCACTGCTCTTTGATTTGCACTGCTCTTTGATTTGCACT
GCTCTTCCTTCAAATATAGTTTGCTTTTTATTATATTCGAACCTTTATCT
CTAAACAAGCTTTCCCTTTCAAACAAACTCTATAAACCAGTCTCCATTGA
ACAAACTACGCTAACTCCGTTAGTGTTAGAGTCATGAAGACTCTTGTTTT
TCCTCTTCTTAAAAGTTGTATTGTGTTGTTGGCAGACTTTTTCAACTAGA
ATTTTATTTCAGGTCATAGGGGGTAACACAGTTACTCGGAAATAATAGGT
TTAACTTTGAACATGATCTCATAGATTCACTGCTTTCCTCCCGATCTGAT
TAAGACACAGTTCACCTccattagcctatttcatagaaTTCATACATCTG
TTACATGCTAAAATTTTCTATTAAATTTTAAATGGGGGAAGTGCATAAAT
CTGTCCCTTCATCATTCAATTGACTTGGGAATTAGAGAACTTTTTCCATT
GTTGTTGCTTTTGTAAAACTTATAATCTCAATTTGGAAAAGAGTGCTtat
aggttttgtttttaagtaagagtgatatcgtttgcttattcatcattttt
aattcacaagctttttcacattggattgacacggatgtggagcaagattg
gtctaaaagaagaaaataacaatagacagacactgtcctgatatgaaata
tgtgcctgatatgaaacggggacactatgtaaaaataaaacctttaatca
tAAAAACTGCAGTGATGTAGAAAAATATGTTCTaaaaacacgaatcctat
gaaataggctaatatCACTGGTGGTAAGttgtggaaatatcatatttatg
atatgcatcattgtcttctgacattacatcacggacccaatagctcattg
gttgtgttattgtaagtgacgtaaaatcagtcaatacgtcactttcaacc
aatcagctgttgggtccgtggaaggcattgtaatggtgcatatcatgaat
actcaTTACGCGTGGTTACTTCAATTTCTCAGGCTGTCATCTAAGGAGAG
TCAACTATTCCAAGTACCAGACAACATNGTGGTTACTTCGATTTCTCAGG
ATGTCATCTAAGGAGAGTCAACTATTCCAAGTACCAGACAACATCAATGT
CAAATCAAAGATCATGAAATCTGAAGAAATGTTATCAAGTCAAATGTTAT
CTGGTATTCCAGAAGTTAATCTAGGTAAGATTTGGTTCCTCTAATGAAAT
TATGGAGTTGTATATTAAGATCTATACAAACCATGAAAAATATCCACCAC
ATACAATGAATGATTAAGAGAATTGAAATACGCTACCTTAAGAGAATCAA
AAATCGTAATAGATAAATTTGGTGAGAGACTATTTTGttgaataatgttt
tttttgattttagcaagaATTAATTTCATTGATGGTAGGGTAAATTATTC
CTCTTCTTCCTAAAGATGAGCCTTTTCaacaaaatatgtttttttaagaa
aattatgaaaaagtgaCAGGTTATTCTAGCTAGGCAATAATTTATActaa
ttttgacaaatattatcaaaatgaGTTCTTACCATATGAAGTTCTCTTGC
GGCATGATATTCAGggatacccggggggggggggactagggttgGCAGAt
gaggggtactagggttgacAGATGACGGGTAACTGCGGATGGGACCTCCG
AAGACCGagccttagagagactgatttttctgaaaaggtgGCCGTTAggg
agacttttttgaaaaattcttttctacaattttttcactttaaatcaaaa
aaaattcctaaaaatcgtgaatttttgagagactttgaagggtgaaaaag
ccgacccttaccgtctgcacatacacagcacccatttttgcctaagtacc
cccctctCCCTGGGAGGGATATAATAAAAACGTTAATTAGTGGTAGTGAT
TGATAGTGTAGATAACAAGCGTCCGAGATTAAATTCGAACAATTATCAAA
GTGGTATTTGAGGTCAAATGAAGGCCTCAGGTTTAGATTTAGATATAGAC
CCTTCATTTACAATACTCATCAAAATTTCGTCTACCATTATAAAGaattt
tattatgtttttttatgacCAGGAATCGAAGCGAAAATCAAGAATATTGA
AGCAACAGAAGAAGCCAAAATGAAGATGATTGATGACAGTAAAAACAAAC
GGCGTGAAAGCTCAGATTTCGTGCCTACTAACATGGCATCAAACTTTATG
CACCACAATCGGTTTTATAACGAGAAAGCTATTGTTGATAAGGAGCGAAA
GAAagagcaaaagaaaaaagaattagaAAGCGTAACTGTTGTTGATAAAG
GACCAACCGTTGGTAAAGAAATTGTTGAGAATGATGTCGATACTAAGTTT
ATGAACAAAGCAATGAATGCAAGTCAAAATAAAAGGAAAGATAAACCTTC
AGATACTGTCGATGATTATATgtttgaaaactttaaaaagaaagCGAAAG
AAGGCCGTTGGAGGTGATGTTTGAGTTCGGAATGGAACGATCTGTCTATG
ACTTGGAGAATGAGGGATGGATCAGGATTTTCATTACTTTAGGTGTGTGA
ACTTTCACGAGGttgaaaaatcgcgaaatttacgatATGTTTTGTTTGCG
AATTTGAGGATGAAAAGGGAAAAATTTTTAATGTagatattttttagctt
ttttaatGTACAAGATATAGAATCAGTTAATGATTCTTAGACAAACTTTA
TTCATGAAAACGTATTTATTAATAACaactacagtatgtggcccccaaaa
cgtcgatcaaatttaaaacttctctcaaatctagaggaagagaggtttta
caaaaatttttgctgcatgaaaaactttaacatctctactttattttccg
gaagttctttttcaaaattttcaatttcaaaaatatttttcaatcgctta
aagataggtagcttttttctaagggccaccaaaacggaggtttgcaattt
tagctatttctcgagatatctttaagatatgaatacaaaattttgaccat
agtttggaaatgtgatttagagggttttgggcataattttttttgataaa
acttttacagtatacccctggttgtcaaaatacaggtttggggcccccaa
aacggaggtgtagttaaaatcaaattattaagcccagtggtaaaaggggg
agaaactatgaacatatttgtgttttccattaaatttacgacccgatgca
tgtaaaatttatgatttttataaaatatttcaagatttttgatgatacaa
agtccaaactgaaaatttagaaattttcaaaatgacaattttgatttaac
aacgtcttaatcaagtttctgaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021094-exon-sc0000378-1491911889:135691..136190 | TCONS_00021094-exon-sc0000378-1491911889:135691..136190 | Clytia hemisphaerica | exon |
| TCONS_00021094-exon-sc0000378-1510915933:135691..136190 | TCONS_00021094-exon-sc0000378-1510915933:135691..136190 | Clytia hemisphaerica | exon |
| TCONS_00021094-exon-sc0000378-1575043694:135691..136190 | TCONS_00021094-exon-sc0000378-1575043694:135691..136190 | Clytia hemisphaerica | exon |
| TCONS_00021094-exon-sc0000378-1491911889:137490..137614 | TCONS_00021094-exon-sc0000378-1491911889:137490..137614 | Clytia hemisphaerica | exon |
| TCONS_00021094-exon-sc0000378-1510915933:137490..137614 | TCONS_00021094-exon-sc0000378-1510915933:137490..137614 | Clytia hemisphaerica | exon |
| TCONS_00021094-exon-sc0000378-1575043694:137490..137614 | TCONS_00021094-exon-sc0000378-1575043694:137490..137614 | Clytia hemisphaerica | exon |
| TCONS_00021094-exon-sc0000378-1491911889:138513..139766 | TCONS_00021094-exon-sc0000378-1491911889:138513..139766 | Clytia hemisphaerica | exon |
| TCONS_00021094-exon-sc0000378-1510915933:138513..139766 | TCONS_00021094-exon-sc0000378-1510915933:138513..139766 | Clytia hemisphaerica | exon |
| TCONS_00021094-exon-sc0000378-1575043694:138513..139766 | TCONS_00021094-exon-sc0000378-1575043694:138513..139766 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000378 | supercontig | sc0000378:135691..139766 + |
Blast
BLAST of TCONS_00021094 vs. Swiss-Prot (Human)
Match: CI078 (Uncharacterized protein C9orf78 OS=Homo sapiens GN=C9orf78 PE=1 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 9.393e-52 Identity = 100/203 (49.26%), Postives = 146/203 (71.92%), Query Frame = 1
Query: 187 QERKELQSFRKRQTGVSAESLLVGEKVEQKKEGGISDPFKIKSGGGLTEMSATAKKVTQVSE-----LGTAFSTETNQRDEDVQLLKYIEEGLKKKRGADEETTSNNEMKMSSKESQLFQVPDNINVKSKIMKSEEMLSSQMLSGIPEVNLGIEAKIKNIEATEEAKMKMIDDSKNKRRES-SDFVPTNMASNFMHHNRFYNE 777
+E +E+Q+ RKR GVSA +LLVGEKV Q++ + DPF++K+GG + + ++SE LGT+FS ETN+RDED ++KYIE LKK++G E ++K + E L+++P+NI V S K+EEMLS+QMLSGIPEV+LGI+AKIKNI +TE+AK +++ + +NK+++S + FVPTNMA N++ HNRFY+E
Sbjct: 32 EETREVQNLRKRPNGVSAVALLVGEKV-QEETTLVDDPFQMKTGGMVDMKKLKERGKDKISEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRKGIVEH--EEQKVKPKNAEDCLYELPENIRVSS-AKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMAVNYVQHNRFYHE 230
The following BLAST results are available for this feature:
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