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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021085 ID=TCONS_00021085|Name=TCONS_00021085|organism=Clytia hemisphaerica|type=transcript|length=1713bp
ttttgaagattttcagtATAATTCCGGATTCATGAAAATAAGAGTCATTA
TCTTTCAGTACCTTGATTTCCCCTTTTCTCATCTACgtacaaagaaaaaa
ttgtattgaATTTTACAATAATATTATAACCCATCACAGaataaaatgtt
tcttatatattataaaaaggaaattttcatcaaatgataTATGATACAAA
AAATAATATCGGTAGAAGCTTAATATAATAATATGTCTTAtatgaaaatt
aagaattttattgGAATGCAAATTGTCTGAGATGTCTAAATCATATAAAA
AGGCTCTAActcctaaaaatcaaaaactactTCAGTTTCATCCCAGGCAA
TTTTTACTGATAGTATTCACAAAAAATCACTCAACCTGTACAGAATCTTC
TTTGTCGAGGAACAAGAACACAGCTCGCAAACGATATgttgttaagaaaa
tttgagCTAGCTAGGAAGCAGCCAATGAGTTTCTCATGTGGAGAAAAATT
GCGGATTGAGTCAATTGAAGCATGAAACCTTCACCTAATCACAAACAGAA
TGTAATATCATTTTTCTACTGACTTGTCTTAAACATTAAGTTAGGTATAA
AAAAATCAGGcgtcaaaaatcaaataaatctaTTTGTTACTAGGCTTAGT
CCttaattttgctgtttttgcttTCGCACGCGCACGATGTGCACGTTgtt
tccgctcctccgccattGATTTCAATTCAATCGCGGGAAGCGATTTTGAG
AGTTTATCTTGTGCTATGTCCAATGGAAAATGTTCGACCGCTCTCCTTCC
GCGAGGTGAAGTTGGAGCGCTTTGGCTCTTCCCCTCATTAGCATTTTTAC
GAATGTCCAAAAGAAGCGATTTATTATTAGATGGCATTTTCGGTGTTTCT
TGGTTCACGACGACTTGTTCCCGCTCGATTCTCGCTTCCGTGTTTAAAGC
CACGAAAGAGGAGCTCGCGTCTGATAACGTCACATGGCTTTCCTCCACAA
GTTCTTCCCCAACCTCCATCGTGGAGGTGCGTTCGCGTACACTGTCGGCA
TGGCCAGTTATTTCAACAGGTCCCAACGGTGGAGTTGTTTGATGTAATAG
TGACGCTAAAGCGACTGCTTCCGTTCGCCCGGGCGTTCGAGAAGGTGTAT
TGGCGTTCGATTCGGAAACTCGGGCGGCTTGTTTCTTAGGGCGTGACGGG
CGTTGGGGCGTTtgtttatcatttttgttttgctgcTTCTGTAGTATCTG
TTCCATTTTTGGTGAAAGAAGACGTGATTTGGTTTGAGGCGTATGTAAAG
AGGTGGCGGAAGGTGTATTGGAGGTGTTTGGCGAATGAACGGGTGAACTG
TAACCGCTCGCATTGCGCGAGGATGAATAGCTTCGGCTTGACGGAGACCA
GACGGCATTTCCATTATCCACACCACTTGTGATGGAGTAATAGTTGGTCG
GTGAAGCGAGTGCTGGTAACTCCAATAGCGTTGCAATGTTGGTCATCTTC
CGGTGTCGTAAAGCATCGCATCTCTTTTGTAAGCGTTGCCGCGCGGACAT
GCAACGTATATAATCATCGAAAACGAATTTTGCGGTGAGTACTGGAAGAG
GGTTGAAACCAGATTTTGAGCGTCGTGTGAAAGGTTGTTGAATGACGATG
TGTAGGGAACGGCTATCGTCTTTATCCGGTGTCGCTTCAACGtcctaaaa
taataaaatataa Run BLAST on NCBI protein sequence of TCONS_00021085-protein >TCONS_00021085-protein ID=TCONS_00021085-protein|Name=TCONS_00021085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MSARQRLQKRCDALRHRKMTNIATLLELPALASPTNYYSITSGVDNGNAV
WSPSSRSYSSSRNASGYSSPVHSPNTSNTPSATSLHTPQTKSRLLSPKME
QILQKQQNKNDKQTPQRPSRPKKQAARVSESNANTPSRTPGRTEAVALAS
LLHQTTPPLGPVEITGHADSVRERTSTMEVGEELVEESHVTLSDASSSFV
ALNTEARIEREQVVVNQETPKMPSNNKSLLLDIRKNANEGKSQSAPTSPR
GRRAVEHFPLDIAQDKLSKSLPAIELKSMAEERKQRAHRARAKAKTAKLR
TKPSNK Run BLAST on NCBI transcript from alignment at sc0000377:74100..75812 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021085 ID=TCONS_00021085|Name=TCONS_00021085|organism=Clytia hemisphaerica|type=transcript|length=1713bp|location=Sequence derived from alignment at sc0000377:74100..75812 (Clytia hemisphaerica)
ttatattttattattttaggaCGTTGAAGCGACACCGGATAAAGACGATA
GCCGTTCCCTACACATCGTCATTCAACAACCTTTCACACGACGCTCAAAA
TCTGGTTTCAACCCTCTTCCAGTACTCACCGCAAAATTCGTTTTCGATGA
TTATATACGTTGCATGTCCGCGCGGCAACGCTTACAAAAGAGATGCGATG
CTTTACGACACCGGAAGATGACCAACATTGCAACGCTATTGGAGTTACCA
GCACTCGCTTCACCGACCAACTATTACTCCATCACAAGTGGTGTGGATAA
TGGAAATGCCGTCTGGTCTCCGTCAAGCCGAAGCTATTCATCCTCGCGCA
ATGCGAGCGGTTACAGTTCACCCGTTCATTCGCCAAACACCTCCAATACA
CCTTCCGCCACCTCTTTACATACGCCTCAAACCAAATCACGTCTTCTTTC
ACCAAAAATGGAACAGATACTACAGAAgcagcaaaacaaaaatgataaac
aAACGCCCCAACGCCCGTCACGCCCTAAGAAACAAGCCGCCCGAGTTTCC
GAATCGAACGCCAATACACCTTCTCGAACGCCCGGGCGAACGGAAGCAGT
CGCTTTAGCGTCACTATTACATCAAACAACTCCACCGTTGGGACCTGTTG
AAATAACTGGCCATGCCGACAGTGTACGCGAACGCACCTCCACGATGGAG
GTTGGGGAAGAACTTGTGGAGGAAAGCCATGTGACGTTATCAGACGCGAG
CTCCTCTTTCGTGGCTTTAAACACGGAAGCGAGAATCGAGCGGGAACAAG
TCGTCGTGAACCAAGAAACACCGAAAATGCCATCTAATAATAAATCGCTT
CTTTTGGACATTCGTAAAAATGCTAATGAGGGGAAGAGCCAAAGCGCTCC
AACTTCACCTCGCGGAAGGAGAGCGGTCGAACATTTTCCATTGGACATAG
CACAAGATAAACTCTCAAAATCGCTTCCCGCGATTGAATTGAAATCaatg
gcggaggagcggaaacAACGTGCACATCGTGCGCGTGCGAaagcaaaaac
agcaaaattaaGGACTAAGCCTAGTAACAAAtagatttatttgatttttg
acgCCTGATTTTTTTATACCTAACTTAATGTTTAAGACAAGTCAGTAGAA
AAATGATATTACATTCTGTTTGTGATTAGGTGAAGGTTTCATGCTTCAAT
TGACTCAATCCGCAATTTTTCTCCACATGAGAAACTCATTGGCTGCTTCC
TAGCTAGctcaaattttcttaacaacATATCGTTTGCGAGCTGTGTTCTT
GTTCCTCGACAAAGAAGATTCTGTACAGGTTGAGTGATTTTTTGTGAATA
CTATCAGTAAAAATTGCCTGGGATGAAACTGAagtagtttttgattttta
ggagTTAGAGCCTTTTTATATGATTTAGACATCTCAGACAATTTGCATTC
caataaaattcttaattttcataTAAGACATATTATTATATTAAGCTTCT
ACCGATATTATTTTTTGTATCATAtatcatttgatgaaaatttccttttt
ataatatataagaaacattttattCTGTGATGGGTTATAATATTATTGTA
AAATtcaatacaattttttctttgtacGTAGATGAGAAAAGGGGAAATCA
AGGTACTGAAAGATAATGACTCTTATTTTCATGAATCCGGAATTATactg
aaaatcttcaaaa Coding sequence (CDS) from alignment at sc0000377:74100..75812 >TCONS_00021085 ID=TCONS_00021085|Name=TCONS_00021085|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at sc0000377:74100..75812 (Clytia hemisphaerica)
ATGTCCGCGCGGCAACGCTTACAAAAGAGATGCGATGCTTTACGACACCG
GAAGATGACCAACATTGCAACGCTATTGGAGTTACCAGCACTCGCTTCAC
CGACCAACTATTACTCCATCACAAGTGGTGTGGATAATGGAAATGCCGTC
TGGTCTCCGTCAAGCCGAAGCTATTCATCCTCGCGCAATGCGAGCGGTTA
CAGTTCACCCGTTCATTCGCCAAACACCTCCAATACACCTTCCGCCACCT
CTTTACATACGCCTCAAACCAAATCACGTCTTCTTTCACCAAAAATGGAA
CAGATACTACAGAAgcagcaaaacaaaaatgataaacaAACGCCCCAACG
CCCGTCACGCCCTAAGAAACAAGCCGCCCGAGTTTCCGAATCGAACGCCA
ATACACCTTCTCGAACGCCCGGGCGAACGGAAGCAGTCGCTTTAGCGTCA
CTATTACATCAAACAACTCCACCGTTGGGACCTGTTGAAATAACTGGCCA
TGCCGACAGTGTACGCGAACGCACCTCCACGATGGAGGTTGGGGAAGAAC
TTGTGGAGGAAAGCCATGTGACGTTATCAGACGCGAGCTCCTCTTTCGTG
GCTTTAAACACGGAAGCGAGAATCGAGCGGGAACAAGTCGTCGTGAACCA
AGAAACACCGAAAATGCCATCTAATAATAAATCGCTTCTTTTGGACATTC
GTAAAAATGCTAATGAGGGGAAGAGCCAAAGCGCTCCAACTTCACCTCGC
GGAAGGAGAGCGGTCGAACATTTTCCATTGGACATAGCACAAGATAAACT
CTCAAAATCGCTTCCCGCGATTGAATTGAAATCaatggcggaggagcgga
aacAACGTGCACATCGTGCGCGTGCGAaagcaaaaacagcaaaattaaGG
ACTAAGCCTAGTAACAAAtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021085-exon-sc0000377-1491911889:74100..75812 | TCONS_00021085-exon-sc0000377-1491911889:74100..75812 | Clytia hemisphaerica | exon |
| TCONS_00021085-exon-sc0000377-1510915933:74100..75812 | TCONS_00021085-exon-sc0000377-1510915933:74100..75812 | Clytia hemisphaerica | exon |
| TCONS_00021085-exon-sc0000377-1575043694:74100..75812 | TCONS_00021085-exon-sc0000377-1575043694:74100..75812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000377 | supercontig | sc0000377:74100..75812 . |
Blast
The following BLAST results are available for this feature:
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