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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021083 ID=TCONS_00021083|Name=TCONS_00021083|organism=Clytia hemisphaerica|type=transcript|length=1556bp
tgtgatatttactttttgtcAAACCATGTTcccaaaattgttttaaaaca
gTTATTGATTTGGTATGATGAattaaaatgaatcaaaaattttattttaa
cacagCGCTGTACAGCGATATATGTACAAGAGTTTCAAATAAAGAAGTAC
TTCTCAATTGATACAATAATGAAACACCgtaaacaaaaaacataaacata
ataTGTAGCGTTCAATCAAggcagaaaaaaatactttttcatgatttata
aAGAACAAGATTACGAACTTTTACAANCACGTAAAGACATTCACTACTCC
ATGTTCAACAACACAGGACGTATTGTCGAGAAAATTGATTCATCAGTTGG
AGATCACAACCTATCTTCAAATTATCAAACCATCATGACTGATCAGAGTC
CAACAAAGGAAGAGATACTTCACCATGTCAACTCCACAGCACTCATCACT
GATGTACTTACCGGATTAGAGGAACTTACCGATATCATGAATGAACACAA
TATCAGTACAAGCTCAGACTCTGATAACAATGAAACAATACGATCACTCA
AAGATCTTCGTCGCNgtcaatgtttacattttatactCAATGTAGGTCAT
TTTGgtaatgtttattttcaatgtaGGTCTGTATTTTATACATTGTTTAC
ATTTCTATCNGACATCCGCCATCATATGAACCAACTAAAAGTCCTCAATC
CAGAAGTTCATGACGTTCACTCTAAAACCTATGATTCAACCATAAAGGAA
GTTGGTGAGTTCATTATTGAATGCAAAAATCACAAGACAAATCATCAGGC
TCAAATGGAGAAAGCATTGGGCGATCAAACcaagttacaagaaaaatcac
aGCAATTTATTGTTGATGACNGGCATTGGGTGATCAAACcaagttacaag
aaaaatcacaGCAATTTATTGTTGATGACACAAACATTCTTCTGAACAGA
CTTGAAGTGATTTTCAACCAAAATCTTAACGGTATGTCCGACACAGAAAT
TCTTCATCTCAAATCACAGCTATCAGATCACGACAAATCATTACGAATTA
TTtccgaaaaatatcaagaacttCTCAAAACACCATCAGCCAACGTGGAA
TTGGAATCTCAAATATCAGAAATTGGTGAGAAGTACATTGAATTGAGCAA
CCTAAAAGGAACCTTTATTGATCACCTCAATGAACAGTTTGCAGATCGAG
AGATTGAAAAGTacaaatctttcaaagaatCCAACCTCAACAtcaagatt
gaaaaattttcagggTATGAATCAATAGACATTTATACGTTCAGatcaaa
ttttgagaaagttCATCTACGAAATACGCCAAAGAAACTCTTACCTGATT
TACTTATAAACAATCATTTATCTGAACCTGCCTTATCACTTGTTAAAGGC
TTAACTGACATTGAAATGATCTGGAATCGCCTAGTTGAAGCTTATGGCAA
CTCCAAAATGCTCGTATCTCGTAAACTTGCTGACATAAAGAAGTTGGATC
CAATCAAAACCAGACATGATCCTGCCAAAATCTTACGAACCATCACTGGA
CTGANN Run BLAST on NCBI protein sequence of TCONS_00021083-protein >TCONS_00021083-protein ID=TCONS_00021083-protein|Name=TCONS_00021083-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MIYKEQDYELLQXRKDIHYSMFNNTGRIVEKIDSSVGDHNLSSNYQTIMT
DQSPTKEEILHHVNSTALITDVLTGLEELTDIMNEHNISTSSDSDNNETI
RSLKDLRRXQCLHFILNVGHFGNVYFQCRSVFYTLFTFLXDIRHHMNQLK
VLNPEVHDVHSKTYDSTIKEVGEFIIECKNHKTNHQAQMEKALGDQTKLQ
EKSQQFIVDDXHWVIKPSYKKNHSNLLLMTQTFF Run BLAST on NCBI transcript from alignment at sc0000377:10149..11704 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021083 ID=TCONS_00021083|Name=TCONS_00021083|organism=Clytia hemisphaerica|type=transcript|length=1556bp|location=Sequence derived from alignment at sc0000377:10149..11704 (Clytia hemisphaerica)
NNTCAGTCCAGTGATGGTTCGTAAGATTTTGGCAGGATCATGTCTGGTTT
TGATTGGATCCAACTTCTTTATGTCAGCAAGTTTACGAGATACGAGCATT
TTGGAGTTGCCATAAGCTTCAACTAGGCGATTCCAGATCATTTCAATGTC
AGTTAAGCCTTTAACAAGTGATAAGGCAGGTTCAGATAAATGATTGTTTA
TAAGTAAATCAGGTAAGAGTTTCTTTGGCGTATTTCGTAGATGaactttc
tcaaaatttgatCTGAACGTATAAATGTCTATTGATTCATAccctgaaaa
tttttcaatcttgaTGTTGAGGTTGGattctttgaaagatttgtACTTTT
CAATCTCTCGATCTGCAAACTGTTCATTGAGGTGATCAATAAAGGTTCCT
TTTAGGTTGCTCAATTCAATGTACTTCTCACCAATTTCTGATATTTGAGA
TTCCAATTCCACGTTGGCTGATGGTGTTTTGAGaagttcttgatattttt
cggaAATAATTCGTAATGATTTGTCGTGATCTGATAGCTGTGATTTGAGA
TGAAGAATTTCTGTGTCGGACATACCGTTAAGATTTTGGTTGAAAATCAC
TTCAAGTCTGTTCAGAAGAATGTTTGTGTCATCAACAATAAATTGCtgtg
atttttcttgtaacttgGTTTGATCACCCAATGCCNGTCATCAACAATAA
ATTGCtgtgatttttcttgtaacttgGTTTGATCGCCCAATGCTTTCTCC
ATTTGAGCCTGATGATTTGTCTTGTGATTTTTGCATTCAATAATGAACTC
ACCAACTTCCTTTATGGTTGAATCATAGGTTTTAGAGTGAACGTCATGAA
CTTCTGGATTGAGGACTTTTAGTTGGTTCATATGATGGCGGATGTCNGAT
AGAAATGTAAACAATGTATAAAATACAGACCtacattgaaaataaacatt
acCAAAATGACCTACATTGagtataaaatgtaaacattgacNGCGACGAA
GATCTTTGAGTGATCGTATTGTTTCATTGTTATCAGAGTCTGAGCTTGTA
CTGATATTGTGTTCATTCATGATATCGGTAAGTTCCTCTAATCCGGTAAG
TACATCAGTGATGAGTGCTGTGGAGTTGACATGGTGAAGTATCTCTTCCT
TTGTTGGACTCTGATCAGTCATGATGGTTTGATAATTTGAAGATAGGTTG
TGATCTCCAACTGATGAATCAATTTTCTCGACAATACGTCCTGTGTTGTT
GAACATGGAGTAGTGAATGTCTTTACGTGNTTGTAAAAGTTCGTAATCTT
GTTCTttataaatcatgaaaaagtatttttttctgccTTGATTGAACGCT
ACAtattatgtttatgttttttgtttacGGTGTTTCATTATTGTATCAAT
TGAGAAGTACTTCTTTATTTGAAACTCTTGTACATATATCGCTGTACAGC
GctgtgttaaaataaaatttttgattcattttaatTCATCATACCAAATC
AATAActgttttaaaacaattttgggAACATGGTTTgacaaaaagtaaat
atcaca Coding sequence (CDS) from alignment at sc0000377:10149..11704 >TCONS_00021083 ID=TCONS_00021083|Name=TCONS_00021083|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0000377:10149..11704 (Clytia hemisphaerica)
TCAGAAGAATGTTTGTGTCATCAACAATAAATTGCtgtgatttttcttgt
aacttgGTTTGATCACCCAATGCCNGTCATCAACAATAAATTGCtgtgat
ttttcttgtaacttgGTTTGATCGCCCAATGCTTTCTCCATTTGAGCCTG
ATGATTTGTCTTGTGATTTTTGCATTCAATAATGAACTCACCAACTTCCT
TTATGGTTGAATCATAGGTTTTAGAGTGAACGTCATGAACTTCTGGATTG
AGGACTTTTAGTTGGTTCATATGATGGCGGATGTCNGATAGAAATGTAAA
CAATGTATAAAATACAGACCtacattgaaaataaacattacCAAAATGAC
CTACATTGagtataaaatgtaaacattgacNGCGACGAAGATCTTTGAGT
GATCGTATTGTTTCATTGTTATCAGAGTCTGAGCTTGTACTGATATTGTG
TTCATTCATGATATCGGTAAGTTCCTCTAATCCGGTAAGTACATCAGTGA
TGAGTGCTGTGGAGTTGACATGGTGAAGTATCTCTTCCTTTGTTGGACTC
TGATCAGTCATGATGGTTTGATAATTTGAAGATAGGTTGTGATCTCCAAC
TGATGAATCAATTTTCTCGACAATACGTCCTGTGTTGTTGAACATGGAGT
AGTGAATGTCTTTACGTGNTTGTAAAAGTTCGTAATCTTGTTCTttataa
atcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021083-exon-sc0000377-1491911889:10149..11704 | TCONS_00021083-exon-sc0000377-1491911889:10149..11704 | Clytia hemisphaerica | exon |
| TCONS_00021083-exon-sc0000377-1510915933:10149..11704 | TCONS_00021083-exon-sc0000377-1510915933:10149..11704 | Clytia hemisphaerica | exon |
| TCONS_00021083-exon-sc0000377-1575043694:10149..11704 | TCONS_00021083-exon-sc0000377-1575043694:10149..11704 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000377 | supercontig | sc0000377:10149..11704 . |
Blast
The following BLAST results are available for this feature:
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