TCONS_00021076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021076
Unique NameTCONS_00021076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021076 ID=TCONS_00021076|Name=TCONS_00021076|organism=Clytia hemisphaerica|type=transcript|length=1005bp
ATAAATGGTACAATCCATCTAAAGTTGTCTTGAGATATTTCAACTTCCAA
AGTCCTTTCCCAAAACAAGaatgtGGTGTCAGCAAAGTTGGACAAAGCAG
AATCGTTGGTGGTCAGAATGCTCTGCCGGGAGAATGGCCATGGCAGGCAT
TTTATATAATTAGAAAAGGAACCAGAGCCTTTTCCTGTGGAGGCGTTTTG
ATCCACAAGAAATGGGTGTTAACGGCCGCCCACTGTACAGTAGGAGACGG
TGCTTTTGTTAGTAAACTTTATCTGGGCGAACACGAGCGTGGAAAAGTTG
ACACTGGAGAACAAACGCCAAAAGTAAAACGAATAATCAACCATGAAATG
TATCGACTCGCACCAGGAACCAATAGTTTTGACTTTGCacttttggaact
ggaaacaGAAGCTCAAATAACAGATAATGTTCGCACTATTTGTATTCCAA
AGAAGCATAGCGGGACTGATTTTGATAATCAAATATGTGACATCACAGGA
TGGGGAACAACGTCAGAAGGTGGCAGTGGCGCCAACATCTTACAAGAAGC
GAGTGTTAGAGTGTACCCTCAACCAGAATGTGTTGGAAATTACGGTAGTC
GAATTGGTGACAGTATGTTTTGTGCCGGATATCGTGATGGTGGAGTAGAC
GCGTGTCAAGGAGACAGTGGTGGTCCCTTACAATGCAAAGATGGAAACAA
ATGGGTTCTCTGGGGAATAACATCTTGGGGTATTGGATGTGCCAGACCTG
ATAGAGCTGGAGTCTATAGCAAGGTTACACAAGTTGTGGATTGGATTGAA
GAGAAAACTGGAGTtactttttaaaacattttgtttatttcataAGGTTT
tattaaacgcttttttataagaatatcagggtgagaatTGACTAAATGTT
AAGAATGTCAAAAGACTGTGTTGAGAATATCTCACCCTCAGATTCTGAAT
ATTCCTAAAGATACTTCACTCTcacccaaaaaaaaacataagtaTTATAA
AAGTG
Run BLAST on NCBI

transcript from alignment at sc0000377:216529..224623-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021076 ID=TCONS_00021076|Name=TCONS_00021076|organism=Clytia hemisphaerica|type=transcript|length=8095bp|location=Sequence derived from alignment at sc0000377:216529..224623- (Clytia hemisphaerica)
ATAAATGGTACAATCCATCTAAAGTTGTCTTGAGATATTTCAACTTCCAA
AGTCCTTTCCCAAAACAAGGTAATAAGACTTCACAGTGAAATAGATTTCT
TAAAATAGCATACAATGGAATGTTTTATGCCCATGTTCCCTGTCCTGTTC
AATTTTTAGATAATCTCTCAATTTCTGAGACAATGGTCCCAAAGCCCTCT
GTCAGCGTTGAGTTCTTGAAAATTTTGGGGTCTGGGGAACGGATTTTTTC
TTGCAAAAATGTTTAAAATCCTTCCGTTTCAAGATACTTGTTGGGGACCT
CAATCACACTCATTGTACCAATACTTGTCTTGCAAAATGCTTGACTTTTA
CAACAATACAAATCATATCTTTTTTTAAGAATGTGGTGTCAGCAAAGTTG
GACAAAGCAGAATCGTTGGTGGTCAGAATGCTCTGCCGGGAGAATGGCCA
TGGCAGGTTCGAAACATTGTTTTCCAAATAAATTTATAAAAGTGGACTCT
CTATAACTCGAACCTCTAATACTCGAATGTCTCCTTAACCCGAACAAGTT
TTTTTGTTCATTCAGTTAATAATGCCTAATAAACCTATACTCTTTATTTC
AAAATCCCCTTAACTCGAATGAATTTGTGTTCCCCGTGCGTGTTCGAGTT
ATAGAGATTCTGCATTAAAGCTCTAGCATGAAACCCGTCACAGTGACAAC
CTAAAAACCTTTTTCTCTAGACTCTACCCCATACATACACCTATAAACTC
CTAAAACGTGAAAAGACTGGGTTAGAATTTCCCTAGTAAATTTTTGCACA
AAAAGTGCTGTCGTCAACAGAAACATCATTTCAAGAGTTTCTCTCTCAAT
TTTTATTTTCTTTACTTCATGAGGAACCTCTGTGCAAAATTTCAGAGCTC
TATCACAGTTTGAAGTATTGTCCCTTTTATATGTGATAATCCGCCCTACT
ATAGAAGGATTGACGTCAAAATGTCAGGAGTCATTGCATTGACTTTTCAT
AAAAAAGGAATTTTGACATTAATCTCTCCTGGCGGCTCTAACCCAGCTTT
CTCATGCTTTAGGCGTATTAAGGAATACAGTTGTGTAAAACATTTTCCAT
GCCTTATATACTGAGGCAGTAATCAACTTTTTTACATTTAGCCATAGTGT
ATTCACCAATAGTAGCTTGGCGGCACCCATTCCCATTTTTATATCGCAAC
AAACATTACCCTATATATTTTGCAATCGCTTTGCTCGCCAAACGTTTCAA
CAAACTTTTTTCTTAGTGCAGTCAAAATCTTTAATTACTTCAATTTGCAA
CCCCATTTTTGGTCGCACCAAGATAAACTTGAGACTCTTTCGTCTTGGAA
AATTTTATCAAAGAGATGGGAAATTTTAATCGTTCTTCTTCTTTGTACTT
CTTCAGGCATTTTATATAATTAGAAAAGGAANTTAAAACGTGAAAAGACT
GGGTTAGAATTTCCCTAGTAAATTTTTGCACAAAAAGTGCTGTCGTCAAC
AGAAACATCATTTTCAAGAGTTTCTCTCTCAATTTTTATTTTCTTTACTT
CATGAGGAACCTCTGTGCAAAATTTCAGAGCTCTATCACAATTTGAAGTA
TCGTCCCTTTTATATGTGATAATCCGCCCTACTATAGAAGGATTGACGTC
AAATTTCAGGAGTCATTGCATTGACTTCTCATCAAGAAAGGAATTTTGAC
ATTAATCTCTCCTGGTGGCTCTAACCCAGCTTTCTCACGCTTTAGGCGTA
TTAAGGAATACAGTTGTGTAAAACATTTTCCATGCCTTATATACTGAGGC
AGTAATCAACTTTTTTAAATGGAAATATTGGCCTTAGTGTATTCACCAAT
AGTAGCTTGGCGGCACCCATTCCCATTTTTATATCGCAACAAACATTACC
CTATATATTTCGCAATCGCTTTGCTCGCCAAACGTTTCAACAAACTTTTT
TCTTAGTGCAGTCAAAATCTTTAATTACTTCAATTTGCAACCCCATTTTT
GGTCGCACCAAGATAAACTTGAGACTCTTTCGTCTTGGAAAATTTTATCA
AAGAGATGGGAAATTTTAATCGTTCTTCTTCTTTGTACTTCTTCAGGCAT
TTTATATAATTAGAAAAGGAACCAGAGCCTTTTCCTGTGGAGGCGTTTTG
ATCCACAAGAAATGGGTGTTAACGGCCGCCCACTGTACAGTAGGAGACGG
TGCTTTTGTTAGTAAACTTTATCTGGGTAAGTTATACCAGTTATTACATT
CTCTTTATATGTTTTTACCGGATGTATCGTTCGTTCTACCAATTTGAGAG
GCTGAAATATAAGTTAAGAAGGAGAGTCGATCGCCATACTACCCTTATAC
TCTTTCTGGGAGTCATCATAGTGAATTTTGTTGCCCATTGGTTGCGTCAT
AGTACATGGTAGCGTGAAGGATTAGATGACGGACTGCAATGGACTTGGCT
CGAATCACCTCCGATGGCTAACTGCAACTTACTTACTTAATTTCCTGGAT
CTATTTGAAACTTTTTGTCTTGTCTTTCTAGGCGAACACGAGCGTGGAAA
AGTTGACACTGGAGAACAAACGCCAAAAGTAAAACGAATAATCAACCATG
AAATGTATCGACTCGCACCAGGAACCAATAGTTTTGACTTTGCACTTTTG
GAACTGGAAACAGAAGCTCAAATAACAGATAACGTTCGCACTATTTGTAT
TCCAAAGAAGCATAGCGGGACTGATTTTGATAATCAAATATGTGACATCA
CAGGATGGGGAACAACGTCAGAAGGTGGCAGTGGCGCCAACGTAAGTTGT
TTTGGGTTGAATATTTTTCATACGTGGTATATGCATATTGACACTTCCTG
ATGCATATTTCCATAACGGGACGCCATCACTTTAAAAAAAATTTTATCAA
ACTCGAACCCAGTTACTTAGTTCGCTCTTTTATGATTCTGATACTGCTCA
CGAAAAGATTGCATTGCGATTTTATCACCTCCATTAAATTGCCTTTAAAA
CATAAGTTTTCAGCAAAAAGAATACATGATATTTTACGCCCATAATCGCA
CGAAGAGTTATTTTTTTTTCTTTGGCGCGCCTTCAAAGAGAGCAATTAAT
TGTTAATTGCTTCCTGTAGAGAGCAATTAGGCAATGAGGCTAATCACTCG
TAATTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTCAGGCATTTTATATAATTAGAAAAGGAACCA
GAGCCTTTTCTTGTGGAGGTGTTTTGATCCACAAGAAATGGGTGTTAACG
GCCGCCCACTGTACAGTAGGAGACGGTGCTTTTGTTAGTAAACTTTATCT
GGGTAAGTTATACCAGTTATTACATTCTCTTTATATGTTTTTACCGGATG
TATCGTTCGTTCTACCAATTTGAGAGGCTGAAATATAAGTTAAGAAGGAG
AGTCGATCGCCATACTACCCTTATACTCTTTCTGGGAGTCATCATAGTGA
ATTTTGTTGCCCATTGGTTGCGTCATAGTACATGGTAGCGTGAAGGATTA
GATGACGGACTGCAATGGACTTGGCTCGAATCACCTCCGATGGCTAACCG
CAACTTACTTACTTAATTTCCTGGATCTATTTGAAACTTTTTGTCTTGTC
TTTCTAGGCGAACACGAGCGTGGAAAAGTTGACACTGGAGAACAAACGCC
AAAAGTAAAACGAATAATCAACCATGAAATGTATCGACTCGCACCAGGAA
CCAATAGTTTTGACTTTGCACTTTTGGAACTGGAAACAGAAGCTCAAATA
ACAGATAATGTTCGCACTATTTGTATTCCAAAGAAGCATAGCGGGACTGA
TTTTGATAATCAAATATGTGACATCACAGGATGGGGAACAACGTCAGAAG
GTGGCAGTGGCGCCAACGTAAGTTGTTTTGGGTTGAATATTTTTCATACG
TGGTATATGCATATTGACACCTCCTGATGCATATTTCCATAACGGGACGC
CATCACTTTAAAAAAAAATTTATCAAACTCGAACCCAGTTACTTAGTTCG
CTCTTTTATGATTCTGATACTGCTCACGAAAAGATTGCATTGCGATTTTA
TCACCTCCATTAAATTGCCCTTAAAACGTAAGTTTTCAGCAAAAAGAATA
CATGATATTTTACGCCCATAATCGCACGAACAGTTATTTTTTTTTCTTTG
GCGCGCCTTCAAAGAGAGCAATTAATCGTTAATTGCTTCCTGTAGAGAGC
AATTAGGCAATGAGGCTAATCACTCGTAATTTTTTTACTTCAAATTTTCC
TCGACCTTTCGGACTCAAACAAAATTAATAACAAAAAAAATCACTCGTGC
AATTTTCGAATTGTACGAGTTATTATGTGATTACGAGCTAATCGTACAAT
TTTTTCACTACTTTTCCCCGTCAGGAAAGTAAATTACAATGAAAGTTTTA
CATTTTTCTCTCGTATTGCACTCTTTATCAATTGATTACATATACTAATC
TGATTCTAACATTTCCCGAGTGGATTTAATTTTGTGACTCAGCAATCTCA
CGCACGCTATATTTTCGCGAAAAATTCGAGAAAAAATTATCAGATTAAAC
AATCGTTTCTACGTCTTTTCAAACCTTTCCCTAATATAAGAAGCTAATTC
CTTGAATAAAGTTATTTTTGCCACTAGTGAAGTATAATTTTGGAATAGTA
GGATGGGGGTAAAATTGTGAAAATCACATGCACAGGAAAAATGTTTTGAT
TCCCTAGGCTATGAAAATGCATACTTCCAGATCTGGAAATCTGGATTTTT
CCCTAACCAATCCCTAGCTAGGGAAGATGCAACAGTTCCCTAGTTATGGA
AATAGAATTTCCCTATTATTGAAAAGTGCTTTTCTCGAGCGAACCCCAAT
AAAACCCCATAGAGTTACCCATATTCACGAATTAAATCCTGATTTATAGA
AAGCTGGTAAAATAATTAAATGTATTCGATCATTCTGTGAGCATTGGTTC
GATAGCTCTCATTCGTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTGCAATTCTGAATGGGCAACTAGAATGTTAA
AAATATTAGTTTTCCACATGTGGAAATCCGTTTTCACTAACACATTGGTA
ATACACTTCCAGCATGGGAAAATAGGATTCCCTAGTTTCCTTACTTTCCC
GAACTTAAAATTCTAGACTAATGTGATCGAACAAAAAACCACATCTGAAA
ATGAACAATCCCTAGGCTAGGGAATCAATAATTTTTTTCCTGTGATGATC
AACGTTAACTACACTTTCAATTGTAGATCTTACAAGAAGCGAGTGTTAGA
GTGTACCCTCAACCAGAATGTGTTGGAAATTACGGTAGTCGAATTGGTGA
CAGTATGTTTTGTGCCGGATATCGTGATGGTGGAGTAGACGCGTGTCAAG
GAGACAGTGGTGGTCCCTTACAATGCAAAGATGGAAACAAATGGGTTCTC
TGGGGAATAACATCTTGGGGTATTGGATGTGCCAGACCTGATAGAGCTGG
AGTCTATAGCAAGGTTACACAAGTTGTGGATTGGATTGAAGAGAAAACTG
GAGTTACTTTTTAAAACATTTTGTTTATTTCATAAGGTTTTATTAAACGC
TTTTTTATAAGAATATCAGGGTGAGAATTGACTAAATGTTAAGAATGTCA
AAAGACTGTGTTGAGAATATCTCACCCTCAGATTCTGAATATTCCTAAAG
ATACTTCACTCTCACCCAAAAAAAAACATAAGTATTATAAAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011812XLOC_011812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021076-exon-sc0000377-1575043694:224555..224623TCONS_00021076-exon-sc0000377-1575043694:224555..224623Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1575043694:224168..224244TCONS_00021076-exon-sc0000377-1575043694:224168..224244Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1575043694:222398..222527TCONS_00021076-exon-sc0000377-1575043694:222398..222527Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1575043694:219707..219966TCONS_00021076-exon-sc0000377-1575043694:219707..219966Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1575043694:216529..216997TCONS_00021076-exon-sc0000377-1575043694:216529..216997Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1510915933:224555..224623TCONS_00021076-exon-sc0000377-1510915933:224555..224623Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1510915933:224168..224244TCONS_00021076-exon-sc0000377-1510915933:224168..224244Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1510915933:222398..222527TCONS_00021076-exon-sc0000377-1510915933:222398..222527Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1510915933:219707..219966TCONS_00021076-exon-sc0000377-1510915933:219707..219966Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1510915933:216529..216997TCONS_00021076-exon-sc0000377-1510915933:216529..216997Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1491911889:224555..224623TCONS_00021076-exon-sc0000377-1491911889:224555..224623Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1491911889:224168..224244TCONS_00021076-exon-sc0000377-1491911889:224168..224244Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1491911889:222398..222527TCONS_00021076-exon-sc0000377-1491911889:222398..222527Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1491911889:219707..219966TCONS_00021076-exon-sc0000377-1491911889:219707..219966Clytia hemisphaericaexon
TCONS_00021076-exon-sc0000377-1491911889:216529..216997TCONS_00021076-exon-sc0000377-1491911889:216529..216997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000377supercontigsc0000377:216529..224623 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.97972	0	0	0	0.276074	0	0	0	0	0	0	0	1.24687	0.115604	0	0.013559	0	0
Blast
[Close]
BLAST of TCONS_00021076 vs. Swiss-Prot (Human)
Match: FA11 (Coagulation factor XI OS=Homo sapiens GN=F11 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.689e-49
Identity = 103/239 (43.10%), Postives = 137/239 (57.32%), Query Frame = 3 
Query:   99 RIVGGQNALPGEWPWQAFYIIRKGTRAFSCGGVLIHKKWVLTAAHCTVG-DGAFVSKLYLGEHERGKVDTGEQTPKVKRIINHEMYRLAPGTNSFDFALLELETEAQITDNVRTICIPKKHSGTDFDNQICDIXXXXXXXXXXXXANILQEASVRVYPQPECVGNY-GSRIGDSMFCAGYRDGGVDACQGDSGGPLQCKDGNKWVLWGITSWGIGCARPDRAGVYSKVTQVVDWIEEKT 809
            RIVGG  ++ GEWPWQ        T+   CGG +I  +W+LTAAHC  G +   + ++Y G   + ++        V+ II H+ Y++A   + +D ALL+LET    TD+ R IC+P K    +     C +TGWG         N LQ+A + +    EC   Y G +I   M CAGYR+GG DAC+GDSGGPL CK    W L GITSWG GCA+ +R GVY+ V + VDWI EKT
Sbjct:  387 RIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAE--SGYDIALLKLETTVNYTDSQRPICLPSK-GDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622
The following BLAST results are available for this feature:
BLAST of TCONS_00021076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FA112.689e-4943.10Coagulation factor XI OS=Homo sapiens GN=F11 PE=1 ... [more]
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