TCONS_00021068 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021068
Unique NameTCONS_00021068
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021068 ID=TCONS_00021068|Name=TCONS_00021068|organism=Clytia hemisphaerica|type=transcript|length=1811bp
CTTTACAAGAATATTGGAAAGATCCACAAATCATATTCGTTCACTTTCGA
AATGAAACCAACAGGAACAATCGCAGGATGGTCAAACATCGTTCATGCTT
ATGATAAAGAAGGAAACTGTTGTCAAGTTGGTCAACGTATCCCTGCTATA
TTTATGGCCTCAAGTTCCACTCGTCTTCATATTACCAACGCTGTGAGTGG
TAAAGGAAATTACGCTGTCAATAGAAATATTCCTATGGGCCAATTCACCA
ATGTGACAATTCAGCAAGTTGAGCAATCAGATGGCTCATACCTGTATTCA
ATTTACCTCAATACGACAAAAATTGCCTCCACAGTCAATACCCAACCTCA
GGAATTCGACAATGTTCAATTGTTTGCTTCAGATAAATGGTACAATCCAT
CTAAAGTTGTCTTGGGATATTTCAACTTCCAAAGTCCTTACCCAAAGCAA
GTACCAGCAGATTCGGAATGTGGTGTCAGCAAAGTTGGACAAAGCAGAAT
CGTTGGTGGTCAGAATGCTCTGCCGGGAGAATGGCCATGGCAGGTATTTT
ATATAATTAGAAAAGGAACCAGAGCCTTTTCTTGTGGAGGCGTTTTGATC
CACAAGAAATGGGTGTTAACGGCCGCCCACTGTACAGTAGGAGACGGTGC
TTTTGTTAGTAAACTTTATCTGGGCGAACACGAGCGTGGAAAAGTCGACG
NTTACTTAATTTCCTGGAtctatttgaaactttttgtcTTGTCTTTCTAG
GCGAACACGAGCGTGGAAAAGTTGACACTGGAGAACAAACGCCAAAAGTA
AAACGAATAATCAACCATGAAATGTATCGACTCGCACCAGGAACCAATAG
TTTTGACTTTGCacttttggaactggaaacaGAAGCTCAAATAACAGATA
ACGTTCGCACTATTTGTATTCCAAAGAAGCGTAGCGGGACTGATTTTGAT
AATCAAATATGTGACATCACAGGATGGGGAACAACGTCAGAAAGTGGCAG
AGGCGCCAAAATCTTACAAGAAGCAAGTGTTAGAGTGTACCCTCAACGAG
AATGTCTTGGAAATTACGGTAGTCGAATTGGTGACAGTATGTTTTGTGCC
GGATATCGTGATGGTGGAGTAGACTCGTGTCAAGGAGACAGTGGTGGTCC
CTTACAATGCAAAGATGGAAACAAATGGGTTCTCTGGGGAATAACATCTT
GGGGTTTTGGATGTGCCAGACCTGGTAGAGCTGGAGTCTATGGCAAGGTT
ACACAAGTTGTGGATTGGATTGAAGAGAAAACTGGAGTtactttttaaaa
cattttgtttatttcataAGGTTTtattaaacgcttttttataagaatat
cagggtgagaatTGACTAAATGTTAAGAATGTCAAAAGACTGTGTTGAGA
ATATCTCACCCTCAGATTCTGAATATTCCTAAAGATACTTCACTCTCacc
caaaaaaaaacacaagtaTTATAAAAGTGTATACCATCTACAGTATATTA
GTATTTTAACAAtttatcatttatcatttttatcatcCTGTCCTACAGAC
CTACTTTTTTGATTATCTGCCCAAAGGACAGCAATTTAAAACACTCTTCT
CTAggctttgaaaatgttttaccacactcttcGCATTCCAAAATGTAACA
TCCAAGTAGAAACGTCGAAGGTGTTAGCCATGTGATCGAGGGTGACTTTC
TAGCTGTTAGAATTGNTATCATCCTGTCCTACAGACCTAATTTTTTAATT
ATCTGCCCAAAGGACAGGAATTTAAAACACTCTTCTCTAggctttgaaaa
tgtttcactGC
Run BLAST on NCBI

transcript from alignment at sc0000377:200838..206403-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021068 ID=TCONS_00021068|Name=TCONS_00021068|organism=Clytia hemisphaerica|type=transcript|length=5566bp|location=Sequence derived from alignment at sc0000377:200838..206403- (Clytia hemisphaerica)
CTTTACAAGAATATTGGAAAGATCCACAAATCATATTCGTTCACTTTCGA
AATGAAACCAACAGGAACAATCGCAGGATGGTCAAACATCGTTCATGCTT
ATGATAAAGAAGGTATGTTTTGGAAAGACCAGGGGTGCTTTTTTACTACG
CTAGATAGATAAGAGGTTCTCAAGCTGACAAGCAGCTTCTTTAAAGCATA
TTGCGCATGCGCAGTTTGTTCCAATCTGCGCAATATGGTAGCTTTCGTAC
GAAAAACGCGGAGAAGCTCGATTTCCACCTTTCTTCGATCGTTGGAAATC
ACACTAGTAAAGTAGTTCTCCTTCTTCCAGCTTTCCAATCATTCTTATTC
TACACACCTTGATCTACATAAACTTTCTTCTAAACCTAGTGAACTCAAAC
AGCTTCGCTATGTCAAGTCAGCTTTGAAATATGTATCCTTTTTCTTCAGG
AAACTGTTGTCAAGTTGGTCAACGTATCCCTGCTATATTTATGGCCTCAA
GTTCCACTCGTCTTCATATTACCAACGCTGTGAGTGGTAAAGGAAATTAC
GCTGTCAATAGAAATATTCCTATGGGCCAATTCACCAATGTGACAATTCA
GCAAGTTGAGCAATCAGATGGCTCATACCTGTATTCAATTTACCTCAATA
CGACAAAAATTGCCTCCACAGTCAATACCCAACCTCAGGAATTCGACAAT
GTTCAATTGTTTGCTTCAGATAAATGGTACAATCCATCTAAAGTTGTCTT
GGGATATTTCAACTTCCAAAGTCCTTACCCAAAGCAAGGTAATAAGACTT
TACGGGGACATAGATTTTTTTTTAAATAACATACAATGGAATGTTTTGTG
CCCATGTTCCCTGTCCTGTTCAATTTTTAGATAATCTCCCAATTTCTGAG
ACAATGGTCCCAAAGCCCTCTGTCAGCGTTGAGTTCTTGAAAATTTTGGG
GTCTGGGGAACGGATTTTTTCTTGCAAAAATGTTTAGAATCCTTCCGTTT
CAAGATACTTGTTTGGGACTTTAATCACAATTTAATCAAATGTACTAATA
CTTGTCTTGAAGAATGCTTGACTTTTACAACAATACAAATCATATCATCT
TTAGTACCAGCAGATTCGGAATGTGGTGTCAGCAAAGTTGGACAAAGCAG
AATCGTTGGTGGTCAGAATGCTCTGCCGGGAGAATGGCCATGGCAGGTTC
GAAACATTGTTTTCCAAATAAATTTATAAAAGTGGACTCTCTATAACTCG
AACCTCTAATACTCGAATGTCTCCTTAACCCGAACAAGTTTTTTGGTCCA
TTCAGTTAATAATGCCTTATAGATAAACCTATACTCCATATTTCAAAATT
CCCTTAACTCGAATGAATTTGTGTTCCCCGTGCGTGTTCGAGTTATAGAG
ATTCTGCATTAAAACTATAGCATGAGACCCGTCACAGTGACAACCTGAAA
ACCTTTTTCTCTACCCCATACATACACCTATAAACTCTTAAAACGTGAAA
AGACTGGGTTAGAATTTCGCTAGTAAAAAGTGATGACGTCAACAGAAACA
TCATTTTCAAGAGTGTCTCTCTCAATTTTTAATTTCCTTATATTCATGAG
GAACCTCATTGCAAAATTTCAGAGCTCTATCACAGTTTGAAGTATCGTCC
CTTTTATATGTGATAAATCCGCCCCACTATAGAAGGATTGACGTCAAATG
TCAGGAGTCATTACATTGACTTTTCATTAAAAAAGGAATTTTGACATTAA
TCTCTCCTGGCGGCTCTAACCCAGCTTTCTCACACTTTAGGCGTATTAAG
GAATACACCTGTGTAAAACATTTTCCATGCCATGCCATACTGAGGCAGTA
ATCAACTTTTTTAAATGGAAATATTGGCCATAGTGTATTCACAAAAAGTA
GCTTGGCGGCACCCATTCCCATTTTTATCTCGCGACAAACATGAGTGATT
TAGCCAAGAAGTATAAAACTTACCCTATATATTTCGCAATCCCTTTGCTC
GCCAAACGTTTCAACAAACCTTTTTCTTAGTGCAGTCAAAATCTTTAATA
ACTTCAATTTGCAACCCCATTTTTGGTCGCACCAAGATAAGGTTGAGACT
CTTTCGTCTTGGAAAATCTTATCAAAGAGATGGGAAATTTTAAACTTTCT
GCTTCTTTGTACTTCTTCAGGTATTTTATATAATTAGAAAAGGAACCAGA
GCCTTTTCTTGTGGAGGCGTTTTGATCCACAAGAAATGGGTGTTAACGGC
CGCCCACTGTACAGTAGGAGACGGTGCTTTTGTTAGTAAACTTTATCTGG
GTAAGTTATACCAGTTATTACATTCTCTTTATATGTTTTTACCGGATGTA
TCGTTCGTTCTACCAATTTGAGAGGCTGAAATATCAGTGAAAAAGGAGAG
TCGATCGCCATACTACCCTAAAGTCTATTCACGATAAGTGTGCACTCTTT
TTTCTTTTACCTATAACTTTTGTCGGAATTCTTAAATCTTTTTAGATTTG
GTATCGTTGGAGAGATATTTGTGAGTGGAACAATTTGAAATAAAAAAGTC
TTTAAAAATATTCTAAAAAAGAAGATGAAAATGAAGAAGAAAAAAATGAA
GATCTTGTAGAGAAGTGCTATAACTTTCATTTTCATTGGAGAGATTTTTT
AATCTTAGGAGGTCATCACTGTGAAGAAATTTCACTAAAATACTTATTCA
AGATAAAGTTATGATACAAAGTTTATAAGTAATTGACCCCAAAAAGCAGC
AGAAAACAGGAGAAAACAGCGTTTTTAGACGTCAATCAACTTATAACTTT
GTTTGATATCTTTTGACTGAATGATTATTTTTGAGAAATTTTTTGACAGT
GATGATGTTCGATGATCAAGGATTCACTTCAGTGAAAATGATAGTTGTAG
CACTTTTCTACAAGATCTTCAATTTTTTCTTCTTCATTTTCATCTTCAGT
TTTAGAATTTTTTTATCGATTTTTTTATTCCAAATTGTTCCACTTACTAA
TATCTTTCCAATGATACCAAATTCATAAAGATTGAAGAATTCCTTCAAAA
TTTATAGGTAAATGAAAAAAGAGTGCACACTTACCGTGAATAGACTTTAG
TACTGTGNGTTCTACCAATTTGAGAGGCTGAAATATAAGTTAAGAAGGAG
AGTCGATCGCCATACTACCCTTATACTCTTTCTGGGAGTCATCATAGTGA
ATTTTGTTGCCCATTGGTTGCGTCATAGTACATGGTAGCGTGAAGGATTA
GATGACGGACTGCAATGGACTTGGCTCGAATCACCTCCGATGGCTAACCG
CAACTTACTTACTCAATTTCCTGGATCTATTTGAAACTTTTTGTCTTGTC
TTTCTAGGCGAACACGAGCGTGGAAAAGTCGACGNTTACTTAATTTCCTG
GATCTATTTGAAACTTTTTGTCTTGTCTTTCTAGGCGAACACGAGCGTGG
AAAAGTTGACACTGGAGAACAAACGCCAAAAGTAAAACGAATAATCAACC
ATGAAATGTATCGACTCGCACCAGGAACCAATAGTTTTGACTTTGCACTT
TTGGAACTGGAAACAGAAGCTCAAATAACAGATAACGTTCGCACTATTTG
TATTCCAAAGAAGCGTAGCGGGACTGATTTTGATAATCAAATATGTGACA
TCACAGGATGGGGAACAACGTCAGAAAGTGGCAGAGGCGCCAAAGTAAGT
TGTTTTGGGTTGAATATCTCTCATACGTGGTATATGCATATTGACACCTC
CTGATGCACATTTCCATAACGGCACGCCATCACTTTAAAAAAAAATTATC
AAACTCGAACCCAGTTACTTAGTTCGCTCTTTTATGATTCTGATACTGCT
CATGAAAAGATTGCATCGCGATTTTATCACCTCCATTAAATGGCCCTTAA
AGGGACATAACAGTACTTGCGAAATTTGTAAACAAACTGTATGCAGCGGA
TACAAAATCAAAACAAATGTCACATGTCAAAATAAAAAATCAAAGCAAAT
AGGGCTAATTTTGATTGTTCAATTGTTTTGCAAGTTTGTTTTGGACACGT
GATTATAATTGTTCTCTTTCATGACACGTGGTTCGCGCAATGTTTACATT
TTACTACTGTAATGTCCCGTTAAAACGTAAGTATTCAGCAAAAAGAATAC
ATTATATTTTACGCCCATAATCGCACGAATAGTTATTTTTTCTTCTTTGG
CGCGCCTTCAAAGAGAGCAATTAATTTTTAATTGCATCCTGTAGAGAGCA
ATTAGGCATTGAGGCTAATCACTCGTGATTTTTTCTGTTTCAAATTTTCC
TCGACCTTTCGGACTCAGAAAATTAATAGCAAAAAAATCACTGGTGCAAT
TTTCGAGTTGTACGAGTTATTATGTGATTACGAGCTAATCGTACAATTTT
TTCACTACTTTTTCCCCGTCAGGAAAGTAAATTACAATGAAAGTTTTACA
TTTTTCTCTCGTATTGCACTCGTTATCAATTGATTACATATACTAATCTG
ATTCTAACATTTCCCGAGTGGATTTAATTTCTTGACTCAGCAATCTCACG
CACGATTTAGTGAGCTATATTTTCGCAAAAAATTCGAGCAAACTATCAGA
TTATACTATCGTTTCTACGTCTTTTCTAACCTTTCCCTAATATAAGAAGC
TAATTCCTTGAATAAAGTTATTTTTTCCACTAGTGAAGTATAATTTCGGA
ATAGTAGGATTGGGGTAAAATTGTGAAAATCACATGATCAACGTTAACTA
CACTTCCAATTGTAGATCTTACAAGAAGCAAGTGTTAGAGTGTACCCTCA
ACGAGAATGTCTTGGAAATTACGGTAGTCGAATTGGTGACAGTATGTTTT
GTGCCGGATATCGTGATGGTGGAGTAGACTCGTGTCAAGGAGACAGTGGT
GGTCCCTTACAATGCAAAGATGGAAACAAATGGGTTCTCTGGGGAATAAC
ATCTTGGGGTTTTGGATGTGCCAGACCTGGTAGAGCTGGAGTCTATGGCA
AGGTTACACAAGTTGTGGATTGGATTGAAGAGAAAACTGGAGTTACTTTT
TAAAACATTTTGTTTATTTCATAAGGTTTTATTAAACGCTTTTTTATAAG
AATATCAGGGTGAGAATTGACTAAATGTTAAGAATGTCAAAAGACTGTGT
TGAGAATATCTCACCCTCAGATTCTGAATATTCCTAAAGATACTTCACTC
TCACCCAAAAAAAAACACAAGTATTATAAAAGTGTATACCATCTACAGTA
TATTAGTATTTTAACAATTTATCATTTATCATTTTTATCATCCTGTCCTA
CAGACCTACTTTTTTGATTATCTGCCCAAAGGACAGCAATTTAAAACACT
CTTCTCTAGGCTTTGAAAATGTTTTACCACACTCTTCGCATTCCAAAATG
TAACATCCAAGTAGAAACGTCGAAGGTGTTAGCCATGTGATCGAGGGTGA
CTTTCTAGCTGTTAGAATTGNTATCATCCTGTCCTACAGACCTAATTTTT
TAATTATCTGCCCAAAGGACAGGAATTTAAAACACTCTTCTCTAGGCTTT
GAAAATGTTTCACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011812XLOC_011812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021068-exon-sc0000377-1575043694:206292..206403TCONS_00021068-exon-sc0000377-1575043694:206292..206403Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1575043694:205616..205954TCONS_00021068-exon-sc0000377-1575043694:205616..205954Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1575043694:205208..205299TCONS_00021068-exon-sc0000377-1575043694:205208..205299Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1575043694:204104..204233TCONS_00021068-exon-sc0000377-1575043694:204104..204233Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1575043694:202710..203046TCONS_00021068-exon-sc0000377-1575043694:202710..203046Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1575043694:200838..201638TCONS_00021068-exon-sc0000377-1575043694:200838..201638Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1510915933:206292..206403TCONS_00021068-exon-sc0000377-1510915933:206292..206403Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1510915933:205616..205954TCONS_00021068-exon-sc0000377-1510915933:205616..205954Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1510915933:205208..205299TCONS_00021068-exon-sc0000377-1510915933:205208..205299Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1510915933:204104..204233TCONS_00021068-exon-sc0000377-1510915933:204104..204233Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1510915933:202710..203046TCONS_00021068-exon-sc0000377-1510915933:202710..203046Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1510915933:200838..201638TCONS_00021068-exon-sc0000377-1510915933:200838..201638Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1491911889:206292..206403TCONS_00021068-exon-sc0000377-1491911889:206292..206403Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1491911889:205616..205954TCONS_00021068-exon-sc0000377-1491911889:205616..205954Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1491911889:205208..205299TCONS_00021068-exon-sc0000377-1491911889:205208..205299Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1491911889:204104..204233TCONS_00021068-exon-sc0000377-1491911889:204104..204233Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1491911889:202710..203046TCONS_00021068-exon-sc0000377-1491911889:202710..203046Clytia hemisphaericaexon
TCONS_00021068-exon-sc0000377-1491911889:200838..201638TCONS_00021068-exon-sc0000377-1491911889:200838..201638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000377supercontigsc0000377:200838..206403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.0877	4.90165	2.73482	3.2257	1.30053	0.731891	0.105871	0.0291167	0	0.114547	0	0	1.42184e-05	0.750246	0.0321577	0	0.0410099	0.297179	0.406551	1.7822	0	0	1.07868	1.41925	0.0343606	0	0.120413	0	0.138274	0.254161
Blast
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BLAST of TCONS_00021068 vs. Swiss-Prot (Human)
Match: ST14 (Suppressor of tumorigenicity 14 protein OS=Homo sapiens GN=ST14 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.215e-40
Identity = 76/185 (41.08%), Postives = 101/185 (54.59%), Query Frame = 3 
Query:  741 VFLGEHERGKVDT-GEQTPKVKRIINHEMYRLAPGTNSFDFALLELETEAQITDNVRTICIPKKRSGTDFDNQICDITGWGTTSESGRGAKILQEASVRVYPQRECLGNYGSRIGDSMFCAGYRDGGVDSCQGDSGGPLQCKDGNKWVLW-GITSWGFGCARPGRAGVYGKVTQVVDWIEEKTGV 1289
             FLG H++ +    G Q  ++KRII+H  +     T  +D ALLELE  A+ +  VR IC+P           I  +TGWG T   G GA ILQ+  +RV  Q  C      +I   M C G+  GGVDSCQGDSGGPL   + +  +   G+ SWG GCA+  + GVY ++    DWI+E TGV
Sbjct:  674 AFLGLHDQSQRSAPGVQERRLKRIISHPFFN--DFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIW-VTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTGV 855

HSP 2 Score: 57.3806 bits (137), Expect = 1.215e-40
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  460 DSECGV-SKVGQSRIVGGQNALPGEWPWQV-FYIIRKGTRAFSCGGVLIHKKWVLTAAHCTVGDGAF 654
            D +CG+ S   Q+R+VGG +A  GEWPWQV  + + +G     CG  LI   W+++AAHC + D  F
Sbjct:  601 DCDCGLRSFTRQARVVGGTDADEGEWPWQVSLHALGQG---HICGASLISPNWLVSAAHCYIDDRGF 664
The following BLAST results are available for this feature:
BLAST of TCONS_00021068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ST141.215e-4041.08Suppressor of tumorigenicity 14 protein OS=Homo sa... [more]
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