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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021063 ID=TCONS_00021063|Name=TCONS_00021063|organism=Clytia hemisphaerica|type=transcript|length=858bp
ATTACACTGATATGGCTTCTACAATCAGATATAGACGAGTGCGCGATGAA
CCAGAATTTCACTTATTGTCCACAGTATCATTCATgtataaacaaagatg
gcggatatggTTGCGAATGTTTGGTCGACAATTGTCACCCTGACAGAGTA
GAGCCAAAGACCACTTCAAGCCAAAAGTTAAAATACGTCATCATTGGATC
ATCAACCGTGGCTGGTTGCATCATCTTGATCGTTGCCGTAACTTTCGTTG
TCATCAAGTGTAAACGTAAAAGAAATACTCGAAAACGTGGCCCTGAAATT
TCCCCTTCAAAGACAAAAACCGAACGATACAAAACACTTACAGAAAACGT
AACTCGATCGCCGGAGGGAATCCGTCTAAATGATTTTTCTAATCCATTGT
CCATTATAACCTCAATAAACATGAAATAACTTGACAAGGTTAACTTTAAC
GTTTGTCCAGCTGGTGCACGATATCGCTTCAACACTCAACTAAATGTTGA
GTTCATGCGCCGTATTTAAATTATTGACCACATATATCCGACATCTTTAA
TCCTAGTTTCTTTTGAATTTGGTACCCAACTGGTAGCACTACTCTTTGTT
TGATTCAATTTTgataattgataaaaatatgttGACCTACATAGAGTAGC
ggtaccattagggtaccactttccaGCCATTTCAGACACAACATTGTTGA
GAGTGTATTTTATAACAAACTTTAGGCTGTAAAGATTTTGTACATATAAA
TGATATCTGGCACATGAAGTTTTGACAAGTTTAGCGATTTTTTTGCCATA
ATTTGTGTCTGTCGAAtttttcttcccttaaggtatatatGATCTAACTT
CGCGATTC Run BLAST on NCBI transcript from alignment at sc0000377:164652..167626- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021063 ID=TCONS_00021063|Name=TCONS_00021063|organism=Clytia hemisphaerica|type=transcript|length=2975bp|location=Sequence derived from alignment at sc0000377:164652..167626- (Clytia hemisphaerica)
ATTACACTGATATGGCTTCTACAATCAGGTTCGTAATATATCGGATACTT
TAACGTTTTTCAAAAGTAACTTAGCGCATTTTAAAATTATTTGTGTTGTT
TAAAGTTTTGCAGGGAATTTCCCCTTGTTATCAAATATCATTCTTTGATT
GTATATGGCTTCGGTTGTACATCGTTTCAAAAAAATGCACCCTTGAAATG
AATAGACTAGCTCGCACAAACTATCACAACACAACTTATTTGGTGGTTTT
TGTTTATACAAACAATCCTCAGTTGAAAATAAATAGACCTATATTGTTAT
ATATGAATAAGTCTAAAACTATTTTTTTGGCCGGCTGGAAATATTTTCAA
TTATTAAATGTAATATCCATTTAACCCAATAAGTGGCATCATTCCACAAA
TTTAAATTTAAGTTTTTATTTTAAATGCGTGTACATATACATCCTGGACT
GGACTTTTTTCACTCATGGGAGGTAAAAAAACAGGTCTAGGCCTAACGGT
ACCAGGACCGAAAAAACTAGAACGATCATATGATGCCAGTGGCACGTAAT
GGGTAAAGGTACATGCATTGACGTATGTCGAATGTCTAACATATAAGATA
TAAAAGATTTATGAAATGGTTGGTTGGGTGTCAGTTTTGGACAAAATCAA
ATAATTTTTTTTCTATCTCACTATAGATATAGACGAGTGCGCGATGAACC
AGAATTTCACTTATTGTCCACAGTATCATTCATGTATAAACAAAGATGGC
GGATATGGTTGCGAATGTTTGGTCGACAATTGTCACCCTGACAGAGTAGA
GCCAAGTAAGAAAGAAATTTTAACTAGAATTTAGCTAAGTGGTTGCTAGT
CTAGTAAACCACGTCTTTGTATTTCGCTACATCTTATGCTTACACTGGGC
TCACTACCTTCACCGAATATGCTAAATATAAATAAAATTCCACCGTTTCG
AAATAAATAGCTTTCCACGGTGTAGGTTTTCCAAAGCACTTTTCCACGGA
AAATTATCTTTTTCATAAGTAACTTTTTTCCCGCATTTCATTTTTTAAAA
AGCAGATGCTTGCTAGTCTGAGGCAGAATATTTCTTTTCAAAAACTTGTT
ATGTAATGAACAAAAAACGGTTTTAAGGCCTGCGAAAGCCCAAGTTAAAA
GAACGAAGAAAGTTTTAAATTGAGTAGAAATTTAATTTGGCAGGTTTTTG
GTAAATCCGCCAGATTATTTTTAAGCTGATTTTTCAAGAGTGGATGGGTT
TATGATGGTTTGTGACAAAAAATGTCAAACTGTTTTTATATTTTTTCTCT
AAGAGACANGGATGGGTTTATGATGGTTTGTGACAAAAAATGTCAAACTG
TTTTTACATTTTTTCTCTAAGAGACCACTTCAAGCCAAAAGTTAAAATAC
GTCATCATTGGATCATCAACCGTGGCTGGTTGCATCATCTTGATCGTTGC
CGTAACTTTCGTTGTCATCAAGTGTAAACGTAAAAGGTATGAAGGAAATA
ATTTTACGCGAAATTTCCGCCGTACGTCTGGGCGACGATATCATTTTAGT
GACGCCGACGCACCTTATATGCAGCATATAAACTTGCTTGAGCCAAATGG
TGCACCAGTAGAACCTGTCGAATAAGTAATTTACAAATAACAATTTCATA
AGAACATGAGACTGACATTCTGAATAGACTTAAAAACAAATTAAGACAAA
ACGAGCCTGCTTCAGCATTCTGACCGTCATTGAGCTTCATACTTTTATAA
AATTGTTCTTAATTCCAAATCCCTCCTGGTCTGCTGGCTAACCACTTTTG
TAGAGGTCTACGACTCAGACTTTAATCCCCCTCTAGGTATTATTTCACTT
AACATTTTTTAATCTTGTAGTTGATAGTTAACGTTATTGTTTTGTTAATT
TGTTGATTTTCCAAATATTATTGATATAACTTAAGAGATTTTAAATATTT
TTACAAATTAAGGCCTTAAAATCTTAGTAAACGAATATGTTATTCTAAAT
GATATCAGAAGTTTATCACCTAGTGAAAGTTGATCCTTAGTTTGGGTAGT
TCATCCAGCAACAGAACTTCGTAGTAGTATTATTTCAACCATAGTATATC
TTATACTATGTTTTAACTAAAATATCCCTCCGGCGAGAAAAGCCACACTT
CTAGATTACAATCAACACCATTGAAAAAAAGACCCAAATCTCATCGAAAA
TTTGACTTTCAGAGGCTCCTGTTGCCTCACTTTTGTTTCAAAAGCCTTCG
TCAACCGTAAAATTTCACGTAGATTCCAAAAATGCAATTTTAAATCAAAA
TATTGTCAAAACCATTTTATCTTGATCCCAAAAATTTCTTAATTGCAAAA
AGTCGAAAAATTATCTATTTCTTTTTTCTTTTCTTCTAGAAATACTCGAA
AACGTGGCCCTGAAATTTCCCCTTCAAAGACAAAAACCGAACGATACAAA
ACACTTACAGAAAACGTAACTCGATCGCCGGAGGGAATCCGTCTAAATGA
TTTTTCTAATCCATTGTCCATTATAACCTCAATAAACATGAAATAACTTG
ACAAGGTTAACTTTAACGTTTGTCCAGCTGGTGCACGATATCGCTTCAAC
ACTCAACTAAATGTTGAGTTCATGCGCCGTATTTAAATTATTGACCACAT
ATATCCGACATCTTTAATCCTAGTTTCTTTTGAATTTGGTACCCAACTGG
TAGCACTACTCTTTGTTTGATTCAATTTTGATAATTGATAAAAATATGTT
GACCTACATAGAGTAGCGGTACCATTAGGGTACCACTTTCCAGCCATTTC
AGACACAACATTGTTGAGAGTGTATTTTATAACAAACTTTAGGCTGTAAA
GATTTTGTACATATAAATGATATCTGGCACATGAAGTTTTGACAAGTTTA
GCGATTTTTTTGCCATAATTTGTGTCTGTCGAATTTTTCTTCCCTTAAGG
TATATATGATCTAACTTCGCGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021063-exon-sc0000377-1575043694:167599..167626 | TCONS_00021063-exon-sc0000377-1575043694:167599..167626 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1575043694:166822..166950 | TCONS_00021063-exon-sc0000377-1575043694:166822..166950 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1575043694:166141..166255 | TCONS_00021063-exon-sc0000377-1575043694:166141..166255 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1575043694:164652..165237 | TCONS_00021063-exon-sc0000377-1575043694:164652..165237 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1510915933:167599..167626 | TCONS_00021063-exon-sc0000377-1510915933:167599..167626 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1510915933:166822..166950 | TCONS_00021063-exon-sc0000377-1510915933:166822..166950 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1510915933:166141..166255 | TCONS_00021063-exon-sc0000377-1510915933:166141..166255 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1510915933:164652..165237 | TCONS_00021063-exon-sc0000377-1510915933:164652..165237 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1491911889:167599..167626 | TCONS_00021063-exon-sc0000377-1491911889:167599..167626 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1491911889:166822..166950 | TCONS_00021063-exon-sc0000377-1491911889:166822..166950 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1491911889:166141..166255 | TCONS_00021063-exon-sc0000377-1491911889:166141..166255 | Clytia hemisphaerica | exon |
| TCONS_00021063-exon-sc0000377-1491911889:164652..165237 | TCONS_00021063-exon-sc0000377-1491911889:164652..165237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000377 | supercontig | sc0000377:164652..167626 - |
Blast
The following BLAST results are available for this feature:
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