TCONS_00021061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021061
Unique NameTCONS_00021061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021061 ID=TCONS_00021061|Name=TCONS_00021061|organism=Clytia hemisphaerica|type=transcript|length=2196bp
ACCTTGAAGGCGTAATCAAAAGGATTCCCATTTCTGACACTAGGTCTATC
CCTAGTGAATCCATTTTGAGCCATAGTAAACTGGTTTCAAGCTTCTCTTT
CTTGGATGGCTGTCATGACCACTCACTCCTACTGACACTTTTTCTTTCTG
CAGCAAAatcttttcctttatttttctagcAAAATTTGCCAATACTCCAT
ACTCCCACGCTCGCTCTTTAATATATCGGTTGTTAAGCTATGCAAACTAC
GTACGGAACACAATATTTCCGGATAGAATTGGCAGTAAAAAATCTTCCGG
AATTTTCGAATCACGTTTGCAACATcacatttcatttttcaagatggcgg
ctcattTCGTCCCTCCTGTAATTCAAGACAATTCAAATGGCTGGGGTCCA
TGTACAGCCTCTAACGAATTTAAAGATATACCATATCAGCCATTTTCCAA
AGGAGATAGAATTGGAAAGATTTCTGATTGGACTGGACAATTCCAAGACA
GAAATAAATATCACTCTCAGTTTGCTGCTGGCAATCAATATGCATATTAC
CATGAAGGTGATGAATCTTCCTTCCAACTGGTGGACACTTCAAAACCACA
GAAGACTGCTTACCAAAAGAATCGCCAAAGATTCAATAATAACCGTATGA
AGAGGGAACGTGAGAAACAACAAAGGAAAGAGGCCATTATGATGGGCCAG
ACAACTCGTGTTAAACTTCAAAAGAAGAACGCAAAGAATAATTATTATCA
CCGACGTTGGAATGATCGCCAACAGGTTCAAAAGAATCGTGCAGCTTCAG
TTGTTGTGAAAGATGATTGGAAGGTTGTTGAAGAATTCGATTTTCCAAGG
CTTGGTAAATTGAAATTGCCTGACATCAAAGATCCCGTTGACTTGTACAA
TTGTGGTACTATGGAACAATACGACAAAGCTTACGATCGTGTCACTACCA
AAAATGAACGTGTCTTGGAACAGAACAGTCGCACGTTCCACCGTGTCACT
ACCACAGACGATCCGATCATAAGAAAATTGACCAGTAAAGGAAATGTGTT
TGGTACTGATGCCATCATCTCTGCTCTCATGTGTTGTACACGTTCTGTAG
CCTCTTGGGACATCATTGTGCAGCGAGTTGGGAAGAAACTCTTCTTCGAT
AAACGAGATGATTCCGACTTTGATTTGATGTCAGTTTTCGAGACTACCCA
AGAAGAGATGAAGGAAGAAGGCATCAACAGCCCCAACAATTTGGCCAGTG
AAGCCACCTACATCAATCAGAATTTCTCACAACAATGTCTGAAGAAAGGA
GACACTTTGAAATATGATAACCCCAACCCTTTCGCTGAAGATGACGGTGA
TGAAGTCGCCTCTGTTGGATACAAGTATCGTAAATATGATATTGGTAATG
GAATTGATTTGGTAGTTCGTTGTGAACACGATGCATACTTGAAAACACCT
GCCGGCGTTCAACAGTATTATAGTATCAAAGCTCTCAACGAATTCGATCC
ACGGATCAGTAAGATCGagtggagacaaaaattggaCTCTCAAATTGGTT
CCGTTCTTGcaattgaattgaaaaacaatagcaacaaaaTTGCCAAGTGG
ACCTGTAATGCTATCCTTGCTTCTGCTGACATCATGAAAATCGGTTACGT
CTCCCGTCACACGCCGAACGATACAACCCGTCACGTCATTTTGGGTACAC
AACAATTCAAACCCAACATGTTTGCTCAGCAAATCGCCTTGGACATGGAC
AATTGTTGGGGTATCTTGCGTGTGATCGTTGATACTTGTCTCAGCTTACC
TGAAGGCAAATATCTCCTCTTGAAAGATCCCAATAAGGGAGTTGTTCGTT
TGTACGACATTCCAGACAACACTTTCGAATCTGACGAGGATGAAGACTCT
GCTGATGACGaaGACGAAGACGAAAGCgaggaagaagaaaaataattatc
ataaattatattttgacgaataaattattttttttgaaaatagcaATTTA
CAATTTACAACATTTAGTATCTAGGAGGCCCGTCACTTTGAAAGGAAAGA
AACGAATCGCGATATTTGGAAATGTTTATTGCTTGCTTATTGTTCCGGAG
AAATGGGATGCAAAAGTTCCGTGCCCGGTCCAGCCTCTTCAAAAGGTCTC
CCTTGCAGAGAGCTCAGAGAAGCAACAAAATTAAAGCTAATCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000377:76036..90559-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021061 ID=TCONS_00021061|Name=TCONS_00021061|organism=Clytia hemisphaerica|type=transcript|length=14524bp|location=Sequence derived from alignment at sc0000377:76036..90559- (Clytia hemisphaerica)
ACCTTGAAGGCGTAATCAAAAGGATTCCCATTTCTGACACTAGGTCTATC
CCTAGTGAATCCATTTTGAGCCATAGTAAACTGGTTTCAAGCTTCTCTTT
CTTGGATGGCTGTCATGACCACTCACTCCTACTGACACTTTTTCTTTCTG
CAGCAAAATCTTTTCCTTTATTTTTCTAGCAAAATTTGCCAATACTCCAT
ACTCCCACGCTCGCTCTTTAATATATCGGTTGTTAAGCTATGCAAACTAC
GTACGGAACACAATATTTCCGGATAGAATTGGCAGTAAAAAATCTTCCGG
AATTTTCGAATCACGTTTGCAACATCACATTTCATTTTTCAAGATGGCGG
CTCATTTCGTCCCTCCTGTAATTCAAGACAATTCAAATGGCTGGGGTCCA
TGTACAGCCTCTAACGAATTTAAAGATATACCATATCAGCCATTTTCCAA
AGGAGATAGAATTGGAAAGGTATAATTAATTTTGACTTGATTAATGAATT
GCCTTGCAGTAGCTTTAATTTGATTTTTAATTTTCTGACTTTTGTATATC
AAAACAAAAGTGATGGGCATATTTCTGGTCAAAAAATACCATAGAAGATC
TTTCAAATTCAGTAGGAGTGGAGGGAATGACATTAAAAGTTCTAAAATAA
TGTGTAAGGCGGTCATCGAAAAAATGCTCTGTTCGCATTGCAACGGGTGT
TAAAATGCATGCGGGCGGACGGGCGGTCAAAAACATTCCCGGTTTTTTTT
TTTAATCACGCCAGTAACTCAGGGCCGGGTGGTAATGAGAGCAAAACAAT
TTTTCGACGGTCGTCAGAGCAATTCAATTGAGAAAAAAGCTATACTTTAA
AAGAACAAATTGCTTTTCCCAGATTTTTTTCCGCATCTCCGCACCGGAAA
ATCAGTGCAAAATTTGATGCGGGCGGGTGACGCGAATAGAACAATTTTTC
GATGACTGCCTAAAAAGATCCTGCATCGATGCCAAAATACAGCCAGAAAG
AGAGATACCATATAAATAAATCCCTGTTGTAAGTTTGTTTAGGCCGATGA
AATTTACATATGAGTTTACCGTCGTGAACTTACCCAAAAATAGATGCGGC
ATGATTTCATTATTCATTATTCATTATTTTCCCAACAGCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTTTAGGAATTTTGAAG
ATAATGAAATTTTCATGCGGGTGCTTTTTAGAGATGCGGGCGGCCGACGG
TAAACTCATATGTAAATTTCATCGGCCTTACATATGACTCGATTTTGCTA
TCTACATTTCCAACAAAAACAAGTTGAAAACAAAACTAAACGATGCAGAG
TGGGCCTACTTAACGCAAGGGTGTCAAATACCATGTGTTCAATAATGAAA
TAAACTTTTCTTTCTAAAACGGCGGCAATAATTGCCGAAAACGGCAAATT
TCATTTATTCACTTTTTTTATTTTTCTGCTGATTCAGCATTTTGTCATTG
AAAAAATTGCCCTTTTCGCCAATAATTGCTGAAAAGAGCAATAATTGCCA
CATATTGTCCTCCCCCCTGGATTCAGGGGGGAATGGGTTTTGAGGTCAAA
AGGACGTATAGGGGGAGAGAATTTTTTTTGAAGCCAGGGCGGGGGAAACG
AGGGGGAGGGGAATGGAAAATTTTCATTCTGCATGGGGGGGGGGAACTCA
CCAAAATCAATTCAAAATTGAAAAACATCTGGTTTTATGAGATGATGTTG
TGATCTGATCACTTATTTCAACCAGCAATATTACGGTTTGAAAACAACTA
TCCTTTCCATTTATTCTTGAATTAGAACTACCTTAGGGAAAACAATAAGT
GTTAAAATCATCAAATTACAGCTTTTTATGCTTGAGGGGGGCAGAGAAAT
TTTTGGAGGCAGGGTGGGGAAAAATGAGGGAGGGGAATGGAAAATTTTCC
TTCTAAGTATGGGGGGGTAGACCCTGAAGGACACTATGTGCCATTTTTAT
ATTTAACACCCAACTGTCCGGTGTTCCGTAGCACAAATTTCAGCGATTGG
TCTGCAGCGGAATGAACCTCGGAACGTTCCAGTGCACTTCTGCTAACGCA
CGTATTTAAAAAAAATCAGCCGAATCATGGTAGTTTCGATATTTCAACCA
GTGATGCTTTCGAATAAATGTGACAAATTCAATTTCATTAGTGGCTGAAC
CATCATCCTCAAAGACTATACCATCACCTGGAGAAAGATATCTTTTTGTA
ACCATTTTTAAGCAGTTTTTAAGAACGTGATAAAAATCACTTGCTCGGGA
ACTTTCCGCAGAGAGAAATATTGTTTTTTAGCTGCTCCGGAAGTTTCCGA
AGCGCCGGGAGGGTCCTCTTTAATGCCTTTTTAATGTCGAAGAGCAACCG
TTTTCAGAAAATTCTTATTTTTATCCAACGATTCGCGAAAGTTTATGCAT
GCGAAAAACAATTTTTCCTCAAATTCGCGAAAGTAAAATAATGTTGCAAA
TTTCGCAATTTTTCGAACTCGCAAAAGTTTCTGCCTGCGATAGTTTGTAC
TCTTAAAGTAGTCTGTTACCCCCCCCTCTGTGGACGACATGAATTTTTCG
AAACAATTTACTATTGAAAAACTTCAGGTTTTCCGATACTTAGCATAAAA
ATAGAGCAGATTTAATGGATTTTCCAATATGGATAAGGGGAGCCGTCCAT
ATTCATTTGACAACGCGAAACGTCAAATTGACGTTATGAGGGGGTGGGAG
GTTTTCAAAAGTTAGGTTTGACGTTATAAGAAATCAAAGGTACACCTTTT
TGTGAAAATCGCAAATATTGGTAACCACCAACCACACTATACTTTATAAG
CTGTCGAAAATATATTTGTGTATGGATTACATGAAAGTATCCCATTGGTT
CGCGCTATGATATCATTACATCATATTTTTATTGTTTGATCGAGCAAACC
ACATCGCACAAGTGGGCAAAGAAGGTGGTACGCCTAAAGCACGGCACTGG
AACTGCCCAATGAACCTACCCAGCTCCGCTCGCAGCTCTATTCTACCATT
GTAAAATCTCATATTTGCTGCACGAGTATTTTTGGCAAGTTAACTCGCCA
ACAAAATTGTGAATGAATAAAATGGCGTGTTTGGATAATAAAAATTCATG
CGAGATCACAAATTTTAAGATTGCAGGAATTCAGATGTTTCTTAACTTGG
TGGCTGCTCTAAATGTGTAATCTTAAATTTGATAATTATATCAAACATAC
ATAATTATGCATGACCTTCTTAAGGGACACCTTGTAGGGATTCACGGAGT
GGGGATGAATAAATTGGAAGTGGTCACAAGTGTTTGTAACATGTGTGATG
ATAATGTTCAAGCTGAAAATTGAAATTGAAAAAATACTAAATATTGATCA
CAAGGAAAAAGCTTAAAAGTCTAAAGTAAAAACTAAAATATAAGCATGTT
TGAATGTATAAATTTGAATATTGATTGATGAATTGATTGAATAGTATTAG
TTGAAAATAAAGTAAGCTAGTCCCTAGCCTAATCTTAATGCCTCATGATG
CAAAAGCATCAAGAAAGAAAAAAAAAATGGCCGACAAAAACAAAATGGCT
GAAAAACTTACCAGCTTGCCTGAAGTGTGAGGCTGGAATAATCCAGGCAG
TGGTGTGATAAAATTTAATAAACTAAACTCATATTGATGAGAGAAAAGTT
TATAAGTTATATGATTGAAGTTGGACTTAGAAAAATTTGATGTTCACTCC
ATGAAATCTCTTGTTGAACTGTTGTGAAAATGAAAGTCCTTGCTTAAATA
GCAAATTCTAGAAAATGTGTAATTTACAGAATGATAAATTCTAGGTCATA
GGTCAAAGTTGATAAATGATAAAAATGTTTAAATTATTACTGACCAAAAC
CAAAAATTGGAAAAATGCATATTTTGAATAAATTAACATAAATAAACAAA
TTAGAATCCAAAATGGTGAACACTGAGAACAGAAAAACACTGAAAATGCA
GAAAACATGAGAAAAACTGGAAAACCGAGAAAAATGAGAAACACAGAGAA
AACCTGAACAAAATGTGAGGGAATGCCAAAAATGATGCAAAAACACTGAA
CTGAAAAGGCTTAGCCGTTACACACCTCCCGAAAAAATGAAGAAGAAGGC
TCAGAAATTTTCCTGAAAAAGGAGAGGATAGCAAGGAATGGTAGATTAAT
TTCAAGGACTGTTATGAAAATTGGTCTTCATGAAAGGAAGTTTTCTGTTA
GAGTACCTTATTACACAAATATTACTAGTCATTTTATGAACACAAATCAT
TAAAAAATTTTGTGTTAATAAAATCTCCTTATTTAAAACCAGCCGCTGTT
TCTTTGAAAAAGCAGAAAAATTCGTGTTAATTTCAGATCGTGCAAATTTC
AAGGCCATTAAATACTTGCCTAGTATTATTTGTGTAATAAGCTAGTCTAA
AAGAAGAAAGAAGTTTATTATCTTGCTTTCTCTCTCTAAAGATATTTCAC
ATTATGTTTCTTAGCTATTTTTGTCCAAAATCCTTTTAAAGATTGGGGAT
GCCAAGAAGAGGGATTAACGACAGAGTAACAAACCTTTCTAGTTTAAAGC
CTAAAAATGTTCTTAACATGTTGTTATTTTCACCATTTGGGTATTTTAGA
GTTCTCAATTCAATGTTTTGCTCGAATGTTTTCTTAGAAGCACTTGTTAT
ACATTTTTGGAAAGCTAAGGGGTAGGGGAATCAAAATAACTTAGGTGCCA
ATTTTTTTTCGGACACTTTGATGTGATTTTCGGTGTGATTTTCGGACAAA
TATGACGGTCTCAGGCAAAAATCATAGGGTTAAAAATTAATGAAAATTTT
AGCTCGAGAAAACGGAGATCTGTTGTATATTTTTGGAAAGCTCTCAAAAA
ATTAGGATTAGAGATAAATTGCAAGTATACGTGATTTCAGTACCTAACTC
GAGATATTGAGCTTCCAAATGCGCAAAAACTGGACAAAAACAGCTGTTTC
TGGCTGAAAAACACTGTTTTTAAGGGTTAATATCTCGAGTTAGGTACAGA
CATCACCTATACTTGCAATATATCTCTAATCTTAAGGTATGTGGAAACCT
TCGTTTGGAATTTTTATCAAAATTTTTTTTTTTGTTTAATCTGATGTAAA
ATTTCCAGAGCTTTCCAGTCATGCAATTATTGTTTATTAATTCCAAATAT
TTTGGATGTTATGATAGAATTTGTATCTCTTCCTTGTTTCCCTTGTTTAT
AAATAAAATGTCTCTCTTCTCTAGTTCAATAAGACCGCCAAACAATGTTC
AAAAAAGAAGAGGGGAACATTTGTGTTTTGCCCCTTTTTATATAAGAACG
GCTGCGTGAAAAGAATTGCTTAGAACAATCAATCTTGTGCCCATTATCTT
TTCGTCCATAATAGAGCCCTTTAGAAGTTACCAAAACAGATGAATGTATC
ATAATAAGGATATATGATTTATTTCGAAATANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAGTTTTGTTTAATCTTTGTGCAAACAAAAGATTAAGGGG
AAAACTTAAATCGATGATATCTCAAGACAGAAAATTGGGATACCTAGGGT
CATTGCACGAGTAATAAGTCCCCTTATCTCTGAGCTACGTACTTCATTTT
TTCTTTATTATACTCGTGAATGATAGATCTAAAAAACGTTGCCACGTTTT
TCTTTCTTTTTGCCTTAAACTAAAGTTATGACCCTTTAAAACAAAAAACC
GTCATTATTTTCATATTTTTTGTCGTTTTTTGACGTTTTATCGAATAATT
CGAAAACTAAGCGTTTAGAAAAAAAAACGTGGCAACGTTTTTTTCGTGTT
TTTTTCTGGATCATGATCATACAAAAAGCTTTATTAAATTGCCAACATAA
GGGGACTTATCACTCTCTGAAAATGACATGGTCATTTTTCCTTTGTTACC
TTTTATTTCTTTGTCAAATTGACAAAATTTAATGTTATCAGCATCATTCG
ATAGAGAATTTAATAAGCTTTCCAAAAATATATACTTTTACTATTGAAAT
ATATCTGTATTGAAAGCTATTAATAAAAGAGTCAGGTGTGGTGTAGAAGG
TTTCCACATACCTTAATTTTTTGAGAGCTTTCCAAAAATATACAACAGGT
CTATGTTTTCTCGAGCTAAAATTTTCATTAATTTTTAACCCTATGATTTT
TGCCTGAGACCGTCATATTTGTCCGAAAATCACATCAAAGTGTCCGAAAA
AAAATTGGCACCTAAGTTATTTTGATTCTCCTACCCCTTAGCTTTCCAAA
AATGTATAACAAGTGCTTCTAACAAAACCTTCGAGCGATTCCAAAAAATC
GAACAAAATTCCCCCTACTATTAGTATGCTACAATTAAACGCAACTGGAT
GATTTTTGTTTGTTTATTTATTTTTTTTGAGTTGGAGAGTCGCAAAATTG
TTGATGTCCGTTTAAATCTCAGAATTTTAGCAAGTAATGGAGAGGATTTC
CCTGACTGGTAGATATTTTTCTATGGCTCAAAACTTAGGAAGTTTCTGAA
ATTCTATTTATATCAAGCTGTTTTAGTTATGTTGAACGGTGAAAAAGATG
TTTCGGTGTTTCAGACTCGATCTGCTCTCAAGGGAATGGACGCTGTTTCA
GTTATATATATTAAAATTAGCGAAAGGGGTTAAAACCACCCTCAGTAACT
TTTGATCTAGTTGAGATTTTGTACCAAATTGGGAACAGATACATATTGTC
TATCCCAATATGATTTCACAACAATAATTTCAAGTCGGTGACATCACCAT
GAAATTGACACCTGTCAGCTAACTCATGAAAAACCGTACCTAAAAAAACA
TCAAATAAAAGCAAACTTAACACTTCTTTATTGCAAAAGCATATAAACTT
CTTCAAACCCTGAACTTTGTTTTTATCTTTTTATCATCTTAGATTTCTGA
TTGGACTGGACAATTCCAAGACAGAAGTAAGTGTAATATTCTTTTTCTTG
CTGTGTGTAAAAGTTTGCCATATAATATTGAATTAAAACAGTTTAAAAAT
TCATGAAACAATTTTTTTCTTATGGACATTTCCCGGTGTTTATAACTAGT
AAACTAGATCATTTTCATGAACTTGCTGATGGTTTCATTTTGGCTTTGGT
TTTGCATTAGTGTATATCATGAATTAAAGATTTGTTCTCATTTTGATTAA
TCCATAGATAAATATCACTCTCAGTTTGCTGCTGGCAATCAATATGCATA
TTACCATGAAGGTGATGAATCTTCCTTCCAACTGGTGGACACTTCAAAAC
CACAGAAGACTGCTTACCAAAAGAATCGCCAAAGATTCAATAATGTAAAT
ACAATCAACTACTTTTGGAACCTCTTGATTTTTTCTGTAATCTTGAATTA
GAACATTGGGCTCCTCTTTATACCTTCTCTGAAAAATCCTCCCTGATTTA
TATCTTTTGCTGACCAAAAACTCTTCTCGTCCAAAGACTTTGTTCAATAC
TTGAAAATAGAAAAGTTTTTTACCATATTTTGTTTTCTTTTCTGATAGAA
CCGTATGAAGAGGGAACGTGAGAAACAACAAAGGAAAGAGGCCATTATGA
TGGGCCAGACAACTCGTGTTAAACTTCAAAAGAAGAACGCAAAGAATAAT
TATTATCACCGACGTTGGAATGATCGCCAACAGGTTTGTATATTAGAATG
TCTCAAATATGTCACCTGCCAGCATCTTCTGCCAAGGTTGACCTTTCCTC
AGTATGGCTGACCATACAACCTGTTACTTTAGATAATTAGGATGCCAAAT
AAAACTTAAACTGTTGTCTCCTTGTCCTCAGCCCCGCTCCAAAACTTTGG
ATCTTTGATGGCAAGCCAACACTGGTGCTATAACTTCAGCATTATCTCAA
TCCAAAAATGCAAATGCTAAAACTTTTCCAAAGACACTTAGATTTACACA
TGATATCAAAATAAGATCAATTTACAAAGGAGTCTAAAAAGAATTTCTGA
CCTTCATATTTTTGTGCCGCCTAATGGAAAGCATTACTTTTTTAACAAAG
TACTTACAACTTAAGTGTTTTAAAACTCGTTGCCATAAATAACTTTGATT
ATTACCACCCTTTTTTCATCTAGGTTCAAAAGAATCGTGCAGCTTCAGTT
GTTGTGAAAGATGATTGGAAGGTTGTTGAAGAATTCGATTTTCCAAGGCT
TGGTAAATTGAAATTGCCTGACATCAAAGATCCCGTTGACTTGTACGTAA
AGCTGCGTAAAGCACTTTTTTTTTGGTTTCTTTGTGCCATTGGTTCAAAT
TTGGTTCAACACTTACCAACAAAGGAACATAAAATGTTTTCTAAATTAAG
AATTGTATAGTAGTCAAGTAGAATTAGGGTGGGCCCTTGATAACTGATTT
TTAATGGTTTTTAAATGTCAAAAATAACAAGACAGGGAGATTCCTCTCGA
TGAGTAGATAAAGAAAATGGGGTCACTTTTGAAATTTGGACCACGGGGTC
CCGAGATATGACCTCTAAAGTCCAAAAAATGACGATTTTTATGACGTCAG
CATTTTTACTGAGATGGATAAATTGGAACCCCTTGACCCCAAAAAATTTG
ACAAAATTTGACAGTCATCACTAAGTACTAAGGTTTGCCCCCGACTATTA
AGTAAGTAAGGACTTATTTTTAGCACAAATGCTTCATGTGGTATTTATTG
AAGGAAAAACCTTGACAGAACTTTCTAGTCTGTCTTAGTAGGTGATACTA
ATGAAATTAAAAAATTTNTTGACAGAACTTTCTAGTCTGTCTTAGTAGGT
GATACTAATTAAATTAAAAAATTTGACCGTATTTCTTAGGTACAATTGTG
GTACTATGGAACAATACGACAAAGCTTACGATCGTGTCACTACCAAAAAT
GAACGTGTCTTGGAACAGAACAGTCGCACGTTCCACCGTGTCACTACCAC
AGACGATCCGATCATAAGAAAATTGACCAGTAAAGGAAATGTGTTTGGTA
CTGATGCCATCATCTCTGCTCTCATGTGTTGTACACGTTCTGTAGCCTCT
TGGGACATCATTGTGCAGCGAGTTGGGAAGAAACTCTTCTTCGATAAACG
AGATGATTCCGACTTTGGTAAGGATTTTTATTTAGATTTAAGTAAGACAG
GACGTTCTTCAGTTTAATTTTAAGTACCTTATTACTTCGAAGTGAGCCAG
GACTCCGAAGTCTTGGGCTTTAAGTAAATATTCTTTTGTACCTAAATGTG
AAGGTGGGTGAGATTTCGAGAGGTACCGCCTCAATTGATGACTTTTTGCC
GAAAATTGCAAAAGTTTTGCTCGGTCACACATCCCATTTAAACAAAAAAA
TTCATTACGATTTTCTAATGCCCTAGGTTCCTACCGCATGCAAACATAAA
GGCACAAAAGAGCGACCCAAAATAACTAACTTTATTGGAATCATCCATTT
AGATTTGATGTCAGTTTTCGAGACTACCCAAGAAGAGATGAAGGAAGAAG
GCATCAACAGCCCCAACAATTTGGCCAGTGAAGCCACCTACATCAATCAG
AATTTCTCACAACAATGTCTGAAGAAAGGAGACACTTTGAAATATGATAA
CCCCAACCCTTTCGCTGAAGATGACGGTGATGAAGTCGCCTCTGTTGGAT
ACAAGTAAGATACCTAATTAGTCTAGCACAGTAGACAAATAATGAAAGGG
TCAAATTTTAGTTCATATAAATTGATATTATCCCGTTACAAAGATCCTAT
TATCATGATACAGCCATATTACTGTATCACATGGATTATTTAAAACGAGT
GCAGTCAAGATATCTGATTTGATACGTTTTGACCACTGTTGTGTTCCGCC
TCTGCTCACTTTTTCGAAAGAGAGTGATGTTATTGAAACTGGTTCTCATT
ATATTGTGCTCCTTACACTAGGTATCGTAAATATGATATTGGTAATGGAA
TTGATTTGGTAGTTCGTTGTGAACACGATGCATACTTGAAAACACCTGCC
GGCGTTCAACAGTATTATAGTATCAAAGCTCTCAACGAATTCGATCCACG
GGTAAGAAACTAAACTTCCTTTATCCGTCTATGACTCGCAGGCTTGCTTA
TTTAACCTCAGTGTTGAGATTAGATCGAGCTGTATTTTATTTACTAAAAC
ATGTTTGATTTCTTGTTCAAGTTTGATTTCTTGTTCAAAAATTCAAATCA
AGTTTGTTTGTTTCTTTGTTAGGCGAGACCAATTTAATTTATTGTTCTAC
GGGAAGAACTTCAGAAAAATATGAGTTGGTTGAATTTAATCTAAGGTCGG
AAGCAACAGGCTTTTTTTCTCTTTATCGGTAAGCATCAAAAGACCCAAAA
CACCATTTTTGAATTCTTTCCTTTCAGATCAGTAAGATCGAGTGGAGACA
AAAATTGGACTCTCAAATTGGTTCCGTTCTTGCAATTGAATTGAAAAACA
ATAGCAACAAAATTGCCAAGTGGACCTGTAATGCTATCCTTGCTTCTGCT
GACATCATGAAAATCGGGTAAGAGAATCCGTTTGAATTGCGAATCACCCC
TACCCTGGTACTTAAAGGGGACGCGGACCTGAAAAAACTTTAAATTGAGA
AGAATAAGGTTTGAAAGAAATGATCTTCAGGGGACCCAGTAGTATAAGTA
CGAGGGATAAATTTCTTTCACCATTGAATTTAAAACTTGTCCCGAACGAT
TAAGTGATTGCCCACCCATGCTATTTTAAAGTTGTTCGAACTGGAAATTC
ATGTTTACCGTATGTTTTGTTACAGTTACGTCTCCCGTCACACGCCGAAC
GATACAACCCGTCACGTCATTTTGGGTACACAACAATTCAAACCCAACAT
GTTTGCTCAGCAAATCGCCTTGGACATGGACAATTGTTGGGGTATCTTGC
GTGTGATCGTTGATACTTGTCTCAGCTTACCTGAAGGCAAATATCTCCTC
TTGAAAGATCCCAATAAGGTAAGAAAAGATTACTAAAAAACCCTGAATTC
CTGAAAATTAACCTCAATATTTCTATTTCCAAAAACTGTACAAACTTTCG
CGAGCAGAAACTTTCTTGTTGTCTAAAAATCGTGAATTTAATAAAAAAGT
CTTTTCGCGAGTATAAACTTTCGCGAAAAGGGCTTGCTATAAAAAGTTTT
AAATTAATTATCGGACCGCAAATTAACATCTTAAGAGTATGTTATCTTAA
ATGTTTCTTTTTTGTNCTTTCGCTGAAGATGACGGTGATGAAGTCGCCTC
TGTTGGATACAAGTAAGATACCTAATTAGTCTAGCACAGTAGACAAATAA
TGAAAGGGACAAATTTTAGTTCATATAAATTGATATTATCCCGTTACAAA
GATCCTACTATTATGATACAGCCATATTACTGTATCACATGGATTATTTA
AAACGAGTGCAGTCAAGATATCTGATTTGATACGTTTTGACCACTGTTGT
GTTCCGCCTCTGCTCACTTTTTCGAAAGAGTGATGTTATTGAAACTGGTT
CTCATTATATTGTGCTCCTTACACTAGGTATCGTAAATATGATATTGGTA
ATGGAATTGATTTGGTAGTTCGTTGTGAACACGATGCATACTTGAAAACA
CCTGCCGGCGTTCAACAGTATTATAGTATCAAAGCTCTCAACGAATTCGA
TCCACGGGTAAGAAACTAAACTTCCTTTATCCGTCTATGACTCGCAGGCT
TGCTTATTTAACCTCAGTGTTGAGATTAGATCGAGCTGTATTTTATTTAC
TAAAACATGTTTGATTTCTTGTTCAAGTTTGATTTCTTGTTCAAAAATTC
AAATCAAGTTTGTTTGTTTCTTTGTTAGGCGAGACCAATTTAATTTATTG
TTCTACGGGAAGAACTTCAGAAAAATATGAGTTGGTTGAATTTAATCTAA
GGTCGGAAGCAACAGGCTTTTTTTCTCTTTATCGGTAAGCATCAAAAGAC
CCAAAACACCATTTTTGAATTCTTTCCTTTCAGATCAGTAAGATCGAGTG
GAGACAAAAATTGGACTCTCAAATTGGTTCCGTTCTTGCAATTGAATTGA
AAAACAATAGCAACAAAATTGCCAAGTGGACCTGTAATGCTATCCTTGCT
TCTGCTGACATCATGAAAATCGGGTAAGAGAATCCGTTTGAATTGCGAAT
CACCCCTACCCTGGTACTTAAAGGGGACGCGGACCTGAAAAAACTTTAAA
TTGAGAAGAATAAGGTTTGAAAGAAATGATCTTCAGGGGACCCAGTAGTA
TAAGTACGAGGGATAAATTTCTTTCACCATTGAATTTAAAACTTGTCCCG
AACGATTAAGTGATTGCCCACCCATGCTATTTTAAAGTTGTTCGAACTGG
AAATTCATGTTTACCGTATGTTTTGTTACAGTTACGTCTCCCGTCACACG
CCGAACGATACAACCCGTCACGTCATTTTGGGTACACAACAATTCAAACC
CAACATGTTTGCTCAGCAAATCGCCTTGGACATGGACAATTGTTGGGGTA
TCTTGCGTGTGATCGTTGATACTTGTCTCAGCTTACCTGAAGGCAAATAT
CTCCTCTTGAAAGATCCCAATAAGGTAAGAAAAGATTACTAAAAAACCCT
GAATTCCTGAAAATTAACCTCAATATTTCTATTTCCAAAAACTGTACAAA
CTTTCGCGAGCAGAAACTTTCTTGTTGTCTAAAAATCGTGAATTTAATAA
AAAAGTCTTTTCGCGAGTATAAACTTTCGCGAAAAGGGCTTGCTATAAAA
AGTTTTAAATTAATTATCGGACCGCAAATTAACATCTTAAGAGTATGTTA
TCTTAAATGTTTCTTTTTTGTAGGGAGTTGTTCGTTTGTACGACATTCCA
GACAACACTTTCGAATCTGACGAGGATGAAGACTCTGCTGATGACGGTAT
GTATAACTTTGAAATTCATTATTTTTCTCTTTAAACTAAGTACTGAACAC
CTAGGCGTAAGGGCCATATCTTTTTAATAATCTTATGGAAATTCCAGCCT
GGTTTAGCTGCAAAAATACAAGCATGGTAACATCGGTAAAATAGTTAAAT
GTGATAATTGGTACGAAAAAGACAATTCGTGTTAGACAATTTGTCATTAG
GGGAGTTGGAATGATTTTGATGACAACTTTCTATATGTCATTTTTTGGTC
AAAATTGGATCATTTGGATAACTAATTTTTAATGCAAATAAGAAAACAAA
CGTGCCAATCAGATTCGGCAATTTACCAAGCTGTTAATCCTCCACTGGTT
CAATAAAGTTTTTAATTCTGTTTGTTTTGTTTTTCTAGAAGACGAAGACG
AAAGCGAGGAAGAAGAAAAATAATTATCATAAATTATATTTTGACGAATA
AATTATTTTTTTTGAAAATAGCAATTTACAATTTACAACATTTAGTATCT
AGGAGGCCCGTCACTTTGAAAGGAAAGAAACGAATCGCGATATTTGGAAA
TGTTTATTGCTTGCTTATTGTTCCGGAGAAATGGGATGCAAAAGTTCCGT
GCCCGGTCCAGCCTCTTCAAAAGGTCTCCCTTGCAGAGAGCTCAGAGAAG
CAACAAAATTAAAGCTAATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011809XLOC_011809Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021061-exon-sc0000377-1575043694:90091..90559TCONS_00021061-exon-sc0000377-1575043694:90091..90559Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:82634..82667TCONS_00021061-exon-sc0000377-1575043694:82634..82667Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:82266..82402TCONS_00021061-exon-sc0000377-1575043694:82266..82402Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:81927..82061TCONS_00021061-exon-sc0000377-1575043694:81927..82061Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:81368..81486TCONS_00021061-exon-sc0000377-1575043694:81368..81486Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:80493..80770TCONS_00021061-exon-sc0000377-1575043694:80493..80770Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:79956..80157TCONS_00021061-exon-sc0000377-1575043694:79956..80157Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:79559..79688TCONS_00021061-exon-sc0000377-1575043694:79559..79688Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:77487..77626TCONS_00021061-exon-sc0000377-1575043694:77487..77626Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:77036..77228TCONS_00021061-exon-sc0000377-1575043694:77036..77228Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:76714..76786TCONS_00021061-exon-sc0000377-1575043694:76714..76786Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1575043694:76036..76321TCONS_00021061-exon-sc0000377-1575043694:76036..76321Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:90091..90559TCONS_00021061-exon-sc0000377-1510915933:90091..90559Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:82634..82667TCONS_00021061-exon-sc0000377-1510915933:82634..82667Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:82266..82402TCONS_00021061-exon-sc0000377-1510915933:82266..82402Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:81927..82061TCONS_00021061-exon-sc0000377-1510915933:81927..82061Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:81368..81486TCONS_00021061-exon-sc0000377-1510915933:81368..81486Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:80493..80770TCONS_00021061-exon-sc0000377-1510915933:80493..80770Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:79956..80157TCONS_00021061-exon-sc0000377-1510915933:79956..80157Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:79559..79688TCONS_00021061-exon-sc0000377-1510915933:79559..79688Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:77487..77626TCONS_00021061-exon-sc0000377-1510915933:77487..77626Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:77036..77228TCONS_00021061-exon-sc0000377-1510915933:77036..77228Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:76714..76786TCONS_00021061-exon-sc0000377-1510915933:76714..76786Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1510915933:76036..76321TCONS_00021061-exon-sc0000377-1510915933:76036..76321Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:90091..90559TCONS_00021061-exon-sc0000377-1491911889:90091..90559Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:82634..82667TCONS_00021061-exon-sc0000377-1491911889:82634..82667Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:82266..82402TCONS_00021061-exon-sc0000377-1491911889:82266..82402Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:81927..82061TCONS_00021061-exon-sc0000377-1491911889:81927..82061Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:81368..81486TCONS_00021061-exon-sc0000377-1491911889:81368..81486Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:80493..80770TCONS_00021061-exon-sc0000377-1491911889:80493..80770Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:79956..80157TCONS_00021061-exon-sc0000377-1491911889:79956..80157Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:79559..79688TCONS_00021061-exon-sc0000377-1491911889:79559..79688Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:77487..77626TCONS_00021061-exon-sc0000377-1491911889:77487..77626Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:77036..77228TCONS_00021061-exon-sc0000377-1491911889:77036..77228Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:76714..76786TCONS_00021061-exon-sc0000377-1491911889:76714..76786Clytia hemisphaericaexon
TCONS_00021061-exon-sc0000377-1491911889:76036..76321TCONS_00021061-exon-sc0000377-1491911889:76036..76321Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000377supercontigsc0000377:76036..90559 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228397	0.380354	0.31504	0.710306	1.15676	0.77118	1.23558	2.01397	0.363454	0.240703	0.0771324	0.609937	0.336161	0.516849	0.389075	0.231965	0.493375	0.146448	0.328295	0.443321	0.294437	0.436149	0.399987	0.281392	1.98252	2.34917	0.210788	0.229335	0.128608	0.309449
Blast
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BLAST of TCONS_00021061 vs. Swiss-Prot (Human)
Match: EIF3D (Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1)

HSP 1 Score: 583.948 bits (1504), Expect = 0.000e+0
Identity = 295/528 (55.87%), Postives = 386/528 (73.11%), Query Frame = 2 
Query:  350 AHFVPPVIQDNSNGWGPCTASNEFKDIPYQPFSKGDRIGKISDWTGQ-FQDR---NKYHSQFAAGNQYAYYHEGDESSFQLVDTSKPQKTAYQKNRQRF--------NNNRMXXXXXXXXXXXAIMMGQTTRVKLQKKNAKNNYYHRRWNDRQQVQKNRAASXXXXXXXXXXXXFDFPRLGKLKLPDIKDPVDLYNCGTMEQYDKAYDRVTTKNERVLEQNSRTFHRVTTTDDPIIRKLT-SKGNVFGTDAIISALMCCTRSVASWDIIVQRVGKKLFFDKRDDSDFDLMSVFETTQEEMKEEG--INSPNNLASEATYINQNFSQQCLKKG-DTLKYDNPNPFAEDDGD--EVASVGYKYRKYDIGNGIDLVVRCEHDAYLKTPAGVQQYYSIKALNEFDPR-ISKIEWRQKLDSQIGSVLAIELKNNSNKIAKWTCNAILASADIMKIGYVSRHTPNDTTRHVILGTQQFKPNMFAQQIALDMDNCWGILRVIVDTCLSLPEGKYLLLKDPNKGVVRLYDIPDNTF 1876
            A F+ PVIQDN +GWGPC    +F+D+PYQPFSKGDR+GK++DWTG  +QD+   NKY SQF  G+QYAY+HE DESSFQLVDT++ QKTAYQ+NR RF         + R   +   Q   ++    +  R++LQKK  K     ++W+  Q+ QK R +SV V+ DW+V EE DFP+L K++  ++ +P D+  CG +E YDKA+DR+TT++E+ L    R FH VTTTDDP+IRKL  ++GNVF TDAI++ LM CTRSV SWDI+VQRVG KLFFDKRD+SDFDL++V ET  E  ++EG   NSP NLA EATYIN NFSQQCL+ G +   + NPNPF EDD D  E+ASV Y+YR++ +G+ IDL+VRCEHD  +    G   + +IK LNE+D R  + ++WRQKLDSQ G+V+A ELKNNS K+A+WTC A+LA ++ +K+GYVSR+   D++RHVILGTQQFKPN FA QI L ++N WGILR ++D C+ L EGKYL+LKDPNK V+R+Y +PD TF
Sbjct:    2 AKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYSSQFGGGSQYAYFHEEDESSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQILPKSAKQKERERIRLQKKFQKQFGVRQKWD--QKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTF 527
The following BLAST results are available for this feature:
BLAST of TCONS_00021061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3D0.000e+055.87Eukaryotic translation initiation factor 3 subunit... [more]
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