TCONS_00021058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021058
Unique NameTCONS_00021058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1963

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021058 ID=TCONS_00021058|Name=TCONS_00021058|organism=Clytia hemisphaerica|type=transcript|length=1963bp
TAAGCTATGCAAACTACGTACGGAACACAATATTTCCGGATAGAATTGGC
AGTAAAAAATCTTCCGGAATTTTCGAATCACGTTTGCAACATcacatttc
atttttcaagatggcggctcattTCGTCCCTCCTGTAATTCAAGACAATT
CAAATGGCTGGGGTCCATGTACAGCCTCTAACGAATTTAAAGATATACCA
TATCAGCCATTTTCCAAAGGAGATAGAATTGGAAAGATTTCTGATTGGAC
TGGACAATTCCAAGACAGAAATAAATATCACTCTCAGTTTGCTGCTGGCA
ATCAATATGCATATTACCATGAAGGTGATGAATCTTCCTTCCAACTGGTG
GACACTTCAAAACCACAGAAGACTGCTTACCAAAAGAATCGCCAAAGATT
CAATAATAACCGTATGAAGAGGGAACGTGAGAAACAACAAAGGAAAGAGG
CCATTATGATGGGCCAGACAACTCGTGTTAAACTTCAAAAGAAGAACGCA
AAGAATAATTATTATCACCGACGTTGGAATGATCGCCAACAGGTTCAAAA
GAATCGTGCAGCTTCAGTTGTTGTGAAAGATGATTGGAAGGTTGTTGAAG
AATTCGATTTTCCAAGGCTTGGTAAATTGAAATTGCCTGACATCAAAGAT
CCCGTTGACTTGTACAATTGTGGTACTATGGAACAATACGACAAAGCTTA
CGATCGTGTCACTACCAAAAATGAACGTGTCTTGGAACAGAACAGTCGCA
CGTTCCACCGTGTCACTACCACAGACGATCCGATCATAAGAAAATTGACC
AGTAAAGGAAATGTGTTTGGTACTGATGCCATCATCTCTGCTCTCATGTG
TTGTACACGTTCTGTAGCCTCTTGGGACATCATTGTGCAGCGAGTTGGGA
AGAAACTCTTCTTCGATAAACGAGATGATTCCGACTTTGATTTGATGTCA
GTTTTCGAGACTACCCAAGAAGAGATGAAGGAAGAAGGCATCAACAGCCC
CAACAATTTGGCCAGTGAAGCCACCTACATCAATCAGAATTTCTCACAAC
AATGTCTGAAGAAAGGAGACACTTTGAAATATGATAACCCCAACCCTTTC
GCTGAAGATGACGGTGATGAAGTCGCCTCTGTTGGATACAAGTATCGTAA
ATATGATATTGGTAATGGAATTGATTTGGTAGTTCGTTGTGAACACGATG
CATACTTGAAAACACCTGCCGGCGTTCAACAGTATTATAGTATCAAAGCT
CTCAACGAATTCGATCCACGGATCAGTAAGATCGagtggagacaaaaatt
ggaCTCTCAAATTGGTTCCGTTCTTGcaattgaattgaaaaacaatagca
acaaaaTTGCCAAGTGGACCTGTAATGCTATCCTTGCTTCTGCTGACATC
ATGAAAATCGGTTACGTCTCCCGTCACACGCCGAACGATACAACCCGTCA
CGTCATTTTGGGTACACAACAATTCAAACCCAACATGTTTGCTCAGCAAA
TCGCCTTGGACATGGACAATTGTTGGGGTATCTTGCGTGTGATCGTTGAT
ACTTGTCTCAGCTTACCTGAAGGCAAATATCTCCTCTTGAAAGATCCCAA
TAAGGGAGTTGTTCGTTTGTACGACATTCCAGACAACACTTTCGAATCTG
ACGAGGATGAAGACTCTGCTGATGACGaaGACGAAGACGAAAGCgaggaa
gaagaaaaataattatcataaattatattttgacgaataaattatttttt
ttgaaaatagcaATTTACAATTTACAACATTTAGTATCTAGGAGGCCCGT
CACTTTGAAAGGAAAGAAACGAATCGCGATATTTGGAAATGTTTATTGCT
TGCTTATTGTTCCGGAGAAATGGGATGCAAAAGTTCCGTGCCCGGTCCAG
CCTCTTCAAAAGGTCTCCCTTGCAGAGAGCTCAGAGAAGCAACAAAATTA
AAGCTAATCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000377:76036..90326-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021058 ID=TCONS_00021058|Name=TCONS_00021058|organism=Clytia hemisphaerica|type=transcript|length=14291bp|location=Sequence derived from alignment at sc0000377:76036..90326- (Clytia hemisphaerica)
TAAGCTATGCAAACTACGTACGGAACACAATATTTCCGGATAGAATTGGC
AGTAAAAAATCTTCCGGAATTTTCGAATCACGTTTGCAACATCACATTTC
ATTTTTCAAGATGGCGGCTCATTTCGTCCCTCCTGTAATTCAAGACAATT
CAAATGGCTGGGGTCCATGTACAGCCTCTAACGAATTTAAAGATATACCA
TATCAGCCATTTTCCAAAGGAGATAGAATTGGAAAGGTATAATTAATTTT
GACTTGATTAATGAATTGCCTTGCAGTAGCTTTAATTTGATTTTTAATTT
TCTGACTTTTGTATATCAAAACAAAAGTGATGGGCATATTTCTGGTCAAA
AAATACCATAGAAGATCTTTCAAATTCAGTAGGAGTGGAGGGAATGACAT
TAAAAGTTCTAAAATAATGTGTAAGGCGGTCATCGAAAAAATGCTCTGTT
CGCATTGCAACGGGTGTTAAAATGCATGCGGGCGGACGGGCGGTCAAAAA
CATTCCCGGTTTTTTTTTTTAATCACGCCAGTAACTCAGGGCCGGGTGGT
AATGAGAGCAAAACAATTTTTCGACGGTCGTCAGAGCAATTCAATTGAGA
AAAAAGCTATACTTTAAAAGAACAAATTGCTTTTCCCAGATTTTTTTCCG
CATCTCCGCACCGGAAAATCAGTGCAAAATTTGATGCGGGCGGGTGACGC
GAATAGAACAATTTTTCGATGACTGCCTAAAAAGATCCTGCATCGATGCC
AAAATACAGCCAGAAAGAGAGATACCATATAAATAAATCCCTGTTGTAAG
TTTGTTTAGGCCGATGAAATTTACATATGAGTTTACCGTCGTGAACTTAC
CCAAAAATAGATGCGGCATGATTTCATTATTCATTATTCATTATTTTCCC
AACAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAA
TTTTAGGAATTTTGAAGATAATGAAATTTTCATGCGGGTGCTTTTTAGAG
ATGCGGGCGGCCGACGGTAAACTCATATGTAAATTTCATCGGCCTTACAT
ATGACTCGATTTTGCTATCTACATTTCCAACAAAAACAAGTTGAAAACAA
AACTAAACGATGCAGAGTGGGCCTACTTAACGCAAGGGTGTCAAATACCA
TGTGTTCAATAATGAAATAAACTTTTCTTTCTAAAACGGCGGCAATAATT
GCCGAAAACGGCAAATTTCATTTATTCACTTTTTTTATTTTTCTGCTGAT
TCAGCATTTTGTCATTGAAAAAATTGCCCTTTTCGCCAATAATTGCTGAA
AAGAGCAATAATTGCCACATATTGTCCTCCCCCCTGGATTCAGGGGGGAA
TGGGTTTTGAGGTCAAAAGGACGTATAGGGGGAGAGAATTTTTTTTGAAG
CCAGGGCGGGGGAAACGAGGGGGAGGGGAATGGAAAATTTTCATTCTGCA
TGGGGGGGGGGAACTCACCAAAATCAATTCAAAATTGAAAAACATCTGGT
TTTATGAGATGATGTTGTGATCTGATCACTTATTTCAACCAGCAATATTA
CGGTTTGAAAACAACTATCCTTTCCATTTATTCTTGAATTAGAACTACCT
TAGGGAAAACAATAAGTGTTAAAATCATCAAATTACAGCTTTTTATGCTT
GAGGGGGGCAGAGAAATTTTTGGAGGCAGGGTGGGGAAAAATGAGGGAGG
GGAATGGAAAATTTTCCTTCTAAGTATGGGGGGGTAGACCCTGAAGGACA
CTATGTGCCATTTTTATATTTAACACCCAACTGTCCGGTGTTCCGTAGCA
CAAATTTCAGCGATTGGTCTGCAGCGGAATGAACCTCGGAACGTTCCAGT
GCACTTCTGCTAACGCACGTATTTAAAAAAAATCAGCCGAATCATGGTAG
TTTCGATATTTCAACCAGTGATGCTTTCGAATAAATGTGACAAATTCAAT
TTCATTAGTGGCTGAACCATCATCCTCAAAGACTATACCATCACCTGGAG
AAAGATATCTTTTTGTAACCATTTTTAAGCAGTTTTTAAGAACGTGATAA
AAATCACTTGCTCGGGAACTTTCCGCAGAGAGAAATATTGTTTTTTAGCT
GCTCCGGAAGTTTCCGAAGCGCCGGGAGGGTCCTCTTTAATGCCTTTTTA
ATGTCGAAGAGCAACCGTTTTCAGAAAATTCTTATTTTTATCCAACGATT
CGCGAAAGTTTATGCATGCGAAAAACAATTTTTCCTCAAATTCGCGAAAG
TAAAATAATGTTGCAAATTTCGCAATTTTTCGAACTCGCAAAAGTTTCTG
CCTGCGATAGTTTGTACTCTTAAAGTAGTCTGTTACCCCCCCCTCTGTGG
ACGACATGAATTTTTCGAAACAATTTACTATTGAAAAACTTCAGGTTTTC
CGATACTTAGCATAAAAATAGAGCAGATTTAATGGATTTTCCAATATGGA
TAAGGGGAGCCGTCCATATTCATTTGACAACGCGAAACGTCAAATTGACG
TTATGAGGGGGTGGGAGGTTTTCAAAAGTTAGGTTTGACGTTATAAGAAA
TCAAAGGTACACCTTTTTGTGAAAATCGCAAATATTGGTAACCACCAACC
ACACTATACTTTATAAGCTGTCGAAAATATATTTGTGTATGGATTACATG
AAAGTATCCCATTGGTTCGCGCTATGATATCATTACATCATATTTTTATT
GTTTGATCGAGCAAACCACATCGCACAAGTGGGCAAAGAAGGTGGTACGC
CTAAAGCACGGCACTGGAACTGCCCAATGAACCTACCCAGCTCCGCTCGC
AGCTCTATTCTACCATTGTAAAATCTCATATTTGCTGCACGAGTATTTTT
GGCAAGTTAACTCGCCAACAAAATTGTGAATGAATAAAATGGCGTGTTTG
GATAATAAAAATTCATGCGAGATCACAAATTTTAAGATTGCAGGAATTCA
GATGTTTCTTAACTTGGTGGCTGCTCTAAATGTGTAATCTTAAATTTGAT
AATTATATCAAACATACATAATTATGCATGACCTTCTTAAGGGACACCTT
GTAGGGATTCACGGAGTGGGGATGAATAAATTGGAAGTGGTCACAAGTGT
TTGTAACATGTGTGATGATAATGTTCAAGCTGAAAATTGAAATTGAAAAA
ATACTAAATATTGATCACAAGGAAAAAGCTTAAAAGTCTAAAGTAAAAAC
TAAAATATAAGCATGTTTGAATGTATAAATTTGAATATTGATTGATGAAT
TGATTGAATAGTATTAGTTGAAAATAAAGTAAGCTAGTCCCTAGCCTAAT
CTTAATGCCTCATGATGCAAAAGCATCAAGAAAGAAAAAAAAAATGGCCG
ACAAAAACAAAATGGCTGAAAAACTTACCAGCTTGCCTGAAGTGTGAGGC
TGGAATAATCCAGGCAGTGGTGTGATAAAATTTAATAAACTAAACTCATA
TTGATGAGAGAAAAGTTTATAAGTTATATGATTGAAGTTGGACTTAGAAA
AATTTGATGTTCACTCCATGAAATCTCTTGTTGAACTGTTGTGAAAATGA
AAGTCCTTGCTTAAATAGCAAATTCTAGAAAATGTGTAATTTACAGAATG
ATAAATTCTAGGTCATAGGTCAAAGTTGATAAATGATAAAAATGTTTAAA
TTATTACTGACCAAAACCAAAAATTGGAAAAATGCATATTTTGAATAAAT
TAACATAAATAAACAAATTAGAATCCAAAATGGTGAACACTGAGAACAGA
AAAACACTGAAAATGCAGAAAACATGAGAAAAACTGGAAAACCGAGAAAA
ATGAGAAACACAGAGAAAACCTGAACAAAATGTGAGGGAATGCCAAAAAT
GATGCAAAAACACTGAACTGAAAAGGCTTAGCCGTTACACACCTCCCGAA
AAAATGAAGAAGAAGGCTCAGAAATTTTCCTGAAAAAGGAGAGGATAGCA
AGGAATGGTAGATTAATTTCAAGGACTGTTATGAAAATTGGTCTTCATGA
AAGGAAGTTTTCTGTTAGAGTACCTTATTACACAAATATTACTAGTCATT
TTATGAACACAAATCATTAAAAAATTTTGTGTTAATAAAATCTCCTTATT
TAAAACCAGCCGCTGTTTCTTTGAAAAAGCAGAAAAATTCGTGTTAATTT
CAGATCGTGCAAATTTCAAGGCCATTAAATACTTGCCTAGTATTATTTGT
GTAATAAGCTAGTCTAAAAGAAGAAAGAAGTTTATTATCTTGCTTTCTCT
CTCTAAAGATATTTCACATTATGTTTCTTAGCTATTTTTGTCCAAAATCC
TTTTAAAGATTGGGGATGCCAAGAAGAGGGATTAACGACAGAGTAACAAA
CCTTTCTAGTTTAAAGCCTAAAAATGTTCTTAACATGTTGTTATTTTCAC
CATTTGGGTATTTTAGAGTTCTCAATTCAATGTTTTGCTCGAATGTTTTC
TTAGAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGGGGAATCA
AAATAACTTAGGTGCCAATTTTTTTTCGGACACTTTGATGTGATTTTCGG
TGTGATTTTCGGACAAATATGACGGTCTCAGGCAAAAATCATAGGGTTAA
AAATTAATGAAAATTTTAGCTCGAGAAAACGGAGATCTGTTGTATATTTT
TGGAAAGCTCTCAAAAAATTAGGATTAGAGATAAATTGCAAGTATACGTG
ATTTCAGTACCTAACTCGAGATATTGAGCTTCCAAATGCGCAAAAACTGG
ACAAAAACAGCTGTTTCTGGCTGAAAAACACTGTTTTTAAGGGTTAATAT
CTCGAGTTAGGTACAGACATCACCTATACTTGCAATATATCTCTAATCTT
AAGGTATGTGGAAACCTTCGTTTGGAATTTTTATCAAAATTTTTTTTTTT
GTTTAATCTGATGTAAAATTTCCAGAGCTTTCCAGTCATGCAATTATTGT
TTATTAATTCCAAATATTTTGGATGTTATGATAGAATTTGTATCTCTTCC
TTGTTTCCCTTGTTTATAAATAAAATGTCTCTCTTCTCTAGTTCAATAAG
ACCGCCAAACAATGTTCAAAAAAGAAGAGGGGAACATTTGTGTTTTGCCC
CTTTTTATATAAGAACGGCTGCGTGAAAAGAATTGCTTAGAACAATCAAT
CTTGTGCCCATTATCTTTTCGTCCATAATAGAGCCCTTTAGAAGTTACCA
AAACAGATGAATGTATCATAATAAGGATATATGATTTATTTCGAAATANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTTTGTTTAATCTTTGTGCA
AACAAAAGATTAAGGGGAAAACTTAAATCGATGATATCTCAAGACAGAAA
ATTGGGATACCTAGGGTCATTGCACGAGTAATAAGTCCCCTTATCTCTGA
GCTACGTACTTCATTTTTTCTTTATTATACTCGTGAATGATAGATCTAAA
AAACGTTGCCACGTTTTTCTTTCTTTTTGCCTTAAACTAAAGTTATGACC
CTTTAAAACAAAAAACCGTCATTATTTTCATATTTTTTGTCGTTTTTTGA
CGTTTTATCGAATAATTCGAAAACTAAGCGTTTAGAAAAAAAAACGTGGC
AACGTTTTTTTCGTGTTTTTTTCTGGATCATGATCATACAAAAAGCTTTA
TTAAATTGCCAACATAAGGGGACTTATCACTCTCTGAAAATGACATGGTC
ATTTTTCCTTTGTTACCTTTTATTTCTTTGTCAAATTGACAAAATTTAAT
GTTATCAGCATCATTCGATAGAGAATTTAATAAGCTTTCCAAAAATATAT
ACTTTTACTATTGAAATATATCTGTATTGAAAGCTATTAATAAAAGAGTC
AGGTGTGGTGTAGAAGGTTTCCACATACCTTAATTTTTTGAGAGCTTTCC
AAAAATATACAACAGGTCTATGTTTTCTCGAGCTAAAATTTTCATTAATT
TTTAACCCTATGATTTTTGCCTGAGACCGTCATATTTGTCCGAAAATCAC
ATCAAAGTGTCCGAAAAAAAATTGGCACCTAAGTTATTTTGATTCTCCTA
CCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTCTAACAAAACCTTCG
AGCGATTCCAAAAAATCGAACAAAATTCCCCCTACTATTAGTATGCTACA
ATTAAACGCAACTGGATGATTTTTGTTTGTTTATTTATTTTTTTTGAGTT
GGAGAGTCGCAAAATTGTTGATGTCCGTTTAAATCTCAGAATTTTAGCAA
GTAATGGAGAGGATTTCCCTGACTGGTAGATATTTTTCTATGGCTCAAAA
CTTAGGAAGTTTCTGAAATTCTATTTATATCAAGCTGTTTTAGTTATGTT
GAACGGTGAAAAAGATGTTTCGGTGTTTCAGACTCGATCTGCTCTCAAGG
GAATGGACGCTGTTTCAGTTATATATATTAAAATTAGCGAAAGGGGTTAA
AACCACCCTCAGTAACTTTTGATCTAGTTGAGATTTTGTACCAAATTGGG
AACAGATACATATTGTCTATCCCAATATGATTTCACAACAATAATTTCAA
GTCGGTGACATCACCATGAAATTGACACCTGTCAGCTAACTCATGAAAAA
CCGTACCTAAAAAAACATCAAATAAAAGCAAACTTAACACTTCTTTATTG
CAAAAGCATATAAACTTCTTCAAACCCTGAACTTTGTTTTTATCTTTTTA
TCATCTTAGATTTCTGATTGGACTGGACAATTCCAAGACAGAAGTAAGTG
TAATATTCTTTTTCTTGCTGTGTGTAAAAGTTTGCCATATAATATTGAAT
TAAAACAGTTTAAAAATTCATGAAACAATTTTTTTCTTATGGACATTTCC
CGGTGTTTATAACTAGTAAACTAGATCATTTTCATGAACTTGCTGATGGT
TTCATTTTGGCTTTGGTTTTGCATTAGTGTATATCATGAATTAAAGATTT
GTTCTCATTTTGATTAATCCATAGATAAATATCACTCTCAGTTTGCTGCT
GGCAATCAATATGCATATTACCATGAAGGTGATGAATCTTCCTTCCAACT
GGTGGACACTTCAAAACCACAGAAGACTGCTTACCAAAAGAATCGCCAAA
GATTCAATAATGTAAATACAATCAACTACTTTTGGAACCTCTTGATTTTT
TCTGTAATCTTGAATTAGAACATTGGGCTCCTCTTTATACCTTCTCTGAA
AAATCCTCCCTGATTTATATCTTTTGCTGACCAAAAACTCTTCTCGTCCA
AAGACTTTGTTCAATACTTGAAAATAGAAAAGTTTTTTACCATATTTTGT
TTTCTTTTCTGATAGAACCGTATGAAGAGGGAACGTGAGAAACAACAAAG
GAAAGAGGCCATTATGATGGGCCAGACAACTCGTGTTAAACTTCAAAAGA
AGAACGCAAAGAATAATTATTATCACCGACGTTGGAATGATCGCCAACAG
GTTTGTATATTAGAATGTCTCAAATATGTCACCTGCCAGCATCTTCTGCC
AAGGTTGACCTTTCCTCAGTATGGCTGACCATACAACCTGTTACTTTAGA
TAATTAGGATGCCAAATAAAACTTAAACTGTTGTCTCCTTGTCCTCAGCC
CCGCTCCAAAACTTTGGATCTTTGATGGCAAGCCAACACTGGTGCTATAA
CTTCAGCATTATCTCAATCCAAAAATGCAAATGCTAAAACTTTTCCAAAG
ACACTTAGATTTACACATGATATCAAAATAAGATCAATTTACAAAGGAGT
CTAAAAAGAATTTCTGACCTTCATATTTTTGTGCCGCCTAATGGAAAGCA
TTACTTTTTTAACAAAGTACTTACAACTTAAGTGTTTTAAAACTCGTTGC
CATAAATAACTTTGATTATTACCACCCTTTTTTCATCTAGGTTCAAAAGA
ATCGTGCAGCTTCAGTTGTTGTGAAAGATGATTGGAAGGTTGTTGAAGAA
TTCGATTTTCCAAGGCTTGGTAAATTGAAATTGCCTGACATCAAAGATCC
CGTTGACTTGTACGTAAAGCTGCGTAAAGCACTTTTTTTTTGGTTTCTTT
GTGCCATTGGTTCAAATTTGGTTCAACACTTACCAACAAAGGAACATAAA
ATGTTTTCTAAATTAAGAATTGTATAGTAGTCAAGTAGAATTAGGGTGGG
CCCTTGATAACTGATTTTTAATGGTTTTTAAATGTCAAAAATAACAAGAC
AGGGAGATTCCTCTCGATGAGTAGATAAAGAAAATGGGGTCACTTTTGAA
ATTTGGACCACGGGGTCCCGAGATATGACCTCTAAAGTCCAAAAAATGAC
GATTTTTATGACGTCAGCATTTTTACTGAGATGGATAAATTGGAACCCCT
TGACCCCAAAAAATTTGACAAAATTTGACAGTCATCACTAAGTACTAAGG
TTTGCCCCCGACTATTAAGTAAGTAAGGACTTATTTTTAGCACAAATGCT
TCATGTGGTATTTATTGAAGGAAAAACCTTGACAGAACTTTCTAGTCTGT
CTTAGTAGGTGATACTAATGAAATTAAAAAATTTNTTGACAGAACTTTCT
AGTCTGTCTTAGTAGGTGATACTAATTAAATTAAAAAATTTGACCGTATT
TCTTAGGTACAATTGTGGTACTATGGAACAATACGACAAAGCTTACGATC
GTGTCACTACCAAAAATGAACGTGTCTTGGAACAGAACAGTCGCACGTTC
CACCGTGTCACTACCACAGACGATCCGATCATAAGAAAATTGACCAGTAA
AGGAAATGTGTTTGGTACTGATGCCATCATCTCTGCTCTCATGTGTTGTA
CACGTTCTGTAGCCTCTTGGGACATCATTGTGCAGCGAGTTGGGAAGAAA
CTCTTCTTCGATAAACGAGATGATTCCGACTTTGGTAAGGATTTTTATTT
AGATTTAAGTAAGACAGGACGTTCTTCAGTTTAATTTTAAGTACCTTATT
ACTTCGAAGTGAGCCAGGACTCCGAAGTCTTGGGCTTTAAGTAAATATTC
TTTTGTACCTAAATGTGAAGGTGGGTGAGATTTCGAGAGGTACCGCCTCA
ATTGATGACTTTTTGCCGAAAATTGCAAAAGTTTTGCTCGGTCACACATC
CCATTTAAACAAAAAAATTCATTACGATTTTCTAATGCCCTAGGTTCCTA
CCGCATGCAAACATAAAGGCACAAAAGAGCGACCCAAAATAACTAACTTT
ATTGGAATCATCCATTTAGATTTGATGTCAGTTTTCGAGACTACCCAAGA
AGAGATGAAGGAAGAAGGCATCAACAGCCCCAACAATTTGGCCAGTGAAG
CCACCTACATCAATCAGAATTTCTCACAACAATGTCTGAAGAAAGGAGAC
ACTTTGAAATATGATAACCCCAACCCTTTCGCTGAAGATGACGGTGATGA
AGTCGCCTCTGTTGGATACAAGTAAGATACCTAATTAGTCTAGCACAGTA
GACAAATAATGAAAGGGTCAAATTTTAGTTCATATAAATTGATATTATCC
CGTTACAAAGATCCTATTATCATGATACAGCCATATTACTGTATCACATG
GATTATTTAAAACGAGTGCAGTCAAGATATCTGATTTGATACGTTTTGAC
CACTGTTGTGTTCCGCCTCTGCTCACTTTTTCGAAAGAGAGTGATGTTAT
TGAAACTGGTTCTCATTATATTGTGCTCCTTACACTAGGTATCGTAAATA
TGATATTGGTAATGGAATTGATTTGGTAGTTCGTTGTGAACACGATGCAT
ACTTGAAAACACCTGCCGGCGTTCAACAGTATTATAGTATCAAAGCTCTC
AACGAATTCGATCCACGGGTAAGAAACTAAACTTCCTTTATCCGTCTATG
ACTCGCAGGCTTGCTTATTTAACCTCAGTGTTGAGATTAGATCGAGCTGT
ATTTTATTTACTAAAACATGTTTGATTTCTTGTTCAAGTTTGATTTCTTG
TTCAAAAATTCAAATCAAGTTTGTTTGTTTCTTTGTTAGGCGAGACCAAT
TTAATTTATTGTTCTACGGGAAGAACTTCAGAAAAATATGAGTTGGTTGA
ATTTAATCTAAGGTCGGAAGCAACAGGCTTTTTTTCTCTTTATCGGTAAG
CATCAAAAGACCCAAAACACCATTTTTGAATTCTTTCCTTTCAGATCAGT
AAGATCGAGTGGAGACAAAAATTGGACTCTCAAATTGGTTCCGTTCTTGC
AATTGAATTGAAAAACAATAGCAACAAAATTGCCAAGTGGACCTGTAATG
CTATCCTTGCTTCTGCTGACATCATGAAAATCGGGTAAGAGAATCCGTTT
GAATTGCGAATCACCCCTACCCTGGTACTTAAAGGGGACGCGGACCTGAA
AAAACTTTAAATTGAGAAGAATAAGGTTTGAAAGAAATGATCTTCAGGGG
ACCCAGTAGTATAAGTACGAGGGATAAATTTCTTTCACCATTGAATTTAA
AACTTGTCCCGAACGATTAAGTGATTGCCCACCCATGCTATTTTAAAGTT
GTTCGAACTGGAAATTCATGTTTACCGTATGTTTTGTTACAGTTACGTCT
CCCGTCACACGCCGAACGATACAACCCGTCACGTCATTTTGGGTACACAA
CAATTCAAACCCAACATGTTTGCTCAGCAAATCGCCTTGGACATGGACAA
TTGTTGGGGTATCTTGCGTGTGATCGTTGATACTTGTCTCAGCTTACCTG
AAGGCAAATATCTCCTCTTGAAAGATCCCAATAAGGTAAGAAAAGATTAC
TAAAAAACCCTGAATTCCTGAAAATTAACCTCAATATTTCTATTTCCAAA
AACTGTACAAACTTTCGCGAGCAGAAACTTTCTTGTTGTCTAAAAATCGT
GAATTTAATAAAAAAGTCTTTTCGCGAGTATAAACTTTCGCGAAAAGGGC
TTGCTATAAAAAGTTTTAAATTAATTATCGGACCGCAAATTAACATCTTA
AGAGTATGTTATCTTAAATGTTTCTTTTTTGTNCTTTCGCTGAAGATGAC
GGTGATGAAGTCGCCTCTGTTGGATACAAGTAAGATACCTAATTAGTCTA
GCACAGTAGACAAATAATGAAAGGGACAAATTTTAGTTCATATAAATTGA
TATTATCCCGTTACAAAGATCCTACTATTATGATACAGCCATATTACTGT
ATCACATGGATTATTTAAAACGAGTGCAGTCAAGATATCTGATTTGATAC
GTTTTGACCACTGTTGTGTTCCGCCTCTGCTCACTTTTTCGAAAGAGTGA
TGTTATTGAAACTGGTTCTCATTATATTGTGCTCCTTACACTAGGTATCG
TAAATATGATATTGGTAATGGAATTGATTTGGTAGTTCGTTGTGAACACG
ATGCATACTTGAAAACACCTGCCGGCGTTCAACAGTATTATAGTATCAAA
GCTCTCAACGAATTCGATCCACGGGTAAGAAACTAAACTTCCTTTATCCG
TCTATGACTCGCAGGCTTGCTTATTTAACCTCAGTGTTGAGATTAGATCG
AGCTGTATTTTATTTACTAAAACATGTTTGATTTCTTGTTCAAGTTTGAT
TTCTTGTTCAAAAATTCAAATCAAGTTTGTTTGTTTCTTTGTTAGGCGAG
ACCAATTTAATTTATTGTTCTACGGGAAGAACTTCAGAAAAATATGAGTT
GGTTGAATTTAATCTAAGGTCGGAAGCAACAGGCTTTTTTTCTCTTTATC
GGTAAGCATCAAAAGACCCAAAACACCATTTTTGAATTCTTTCCTTTCAG
ATCAGTAAGATCGAGTGGAGACAAAAATTGGACTCTCAAATTGGTTCCGT
TCTTGCAATTGAATTGAAAAACAATAGCAACAAAATTGCCAAGTGGACCT
GTAATGCTATCCTTGCTTCTGCTGACATCATGAAAATCGGGTAAGAGAAT
CCGTTTGAATTGCGAATCACCCCTACCCTGGTACTTAAAGGGGACGCGGA
CCTGAAAAAACTTTAAATTGAGAAGAATAAGGTTTGAAAGAAATGATCTT
CAGGGGACCCAGTAGTATAAGTACGAGGGATAAATTTCTTTCACCATTGA
ATTTAAAACTTGTCCCGAACGATTAAGTGATTGCCCACCCATGCTATTTT
AAAGTTGTTCGAACTGGAAATTCATGTTTACCGTATGTTTTGTTACAGTT
ACGTCTCCCGTCACACGCCGAACGATACAACCCGTCACGTCATTTTGGGT
ACACAACAATTCAAACCCAACATGTTTGCTCAGCAAATCGCCTTGGACAT
GGACAATTGTTGGGGTATCTTGCGTGTGATCGTTGATACTTGTCTCAGCT
TACCTGAAGGCAAATATCTCCTCTTGAAAGATCCCAATAAGGTAAGAAAA
GATTACTAAAAAACCCTGAATTCCTGAAAATTAACCTCAATATTTCTATT
TCCAAAAACTGTACAAACTTTCGCGAGCAGAAACTTTCTTGTTGTCTAAA
AATCGTGAATTTAATAAAAAAGTCTTTTCGCGAGTATAAACTTTCGCGAA
AAGGGCTTGCTATAAAAAGTTTTAAATTAATTATCGGACCGCAAATTAAC
ATCTTAAGAGTATGTTATCTTAAATGTTTCTTTTTTGTAGGGAGTTGTTC
GTTTGTACGACATTCCAGACAACACTTTCGAATCTGACGAGGATGAAGAC
TCTGCTGATGACGGTATGTATAACTTTGAAATTCATTATTTTTCTCTTTA
AACTAAGTACTGAACACCTAGGCGTAAGGGCCATATCTTTTTAATAATCT
TATGGAAATTCCAGCCTGGTTTAGCTGCAAAAATACAAGCATGGTAACAT
CGGTAAAATAGTTAAATGTGATAATTGGTACGAAAAAGACAATTCGTGTT
AGACAATTTGTCATTAGGGGAGTTGGAATGATTTTGATGACAACTTTCTA
TATGTCATTTTTTGGTCAAAATTGGATCATTTGGATAACTAATTTTTAAT
GCAAATAAGAAAACAAACGTGCCAATCAGATTCGGCAATTTACCAAGCTG
TTAATCCTCCACTGGTTCAATAAAGTTTTTAATTCTGTTTGTTTTGTTTT
TCTAGAAGACGAAGACGAAAGCGAGGAAGAAGAAAAATAATTATCATAAA
TTATATTTTGACGAATAAATTATTTTTTTTGAAAATAGCAATTTACAATT
TACAACATTTAGTATCTAGGAGGCCCGTCACTTTGAAAGGAAAGAAACGA
ATCGCGATATTTGGAAATGTTTATTGCTTGCTTATTGTTCCGGAGAAATG
GGATGCAAAAGTTCCGTGCCCGGTCCAGCCTCTTCAAAAGGTCTCCCTTG
CAGAGAGCTCAGAGAAGCAACAAAATTAAAGCTAATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011809XLOC_011809Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021058-exon-sc0000377-1575043694:90091..90326TCONS_00021058-exon-sc0000377-1575043694:90091..90326Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:82634..82667TCONS_00021058-exon-sc0000377-1575043694:82634..82667Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:82266..82402TCONS_00021058-exon-sc0000377-1575043694:82266..82402Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:81927..82061TCONS_00021058-exon-sc0000377-1575043694:81927..82061Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:81368..81486TCONS_00021058-exon-sc0000377-1575043694:81368..81486Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:80493..80770TCONS_00021058-exon-sc0000377-1575043694:80493..80770Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:79956..80157TCONS_00021058-exon-sc0000377-1575043694:79956..80157Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:79559..79688TCONS_00021058-exon-sc0000377-1575043694:79559..79688Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:79093..79232TCONS_00021058-exon-sc0000377-1575043694:79093..79232Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:78674..78834TCONS_00021058-exon-sc0000377-1575043694:78674..78834Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:77036..77067TCONS_00021058-exon-sc0000377-1575043694:77036..77067Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:76714..76786TCONS_00021058-exon-sc0000377-1575043694:76714..76786Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1575043694:76036..76321TCONS_00021058-exon-sc0000377-1575043694:76036..76321Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:90091..90326TCONS_00021058-exon-sc0000377-1510915933:90091..90326Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:82634..82667TCONS_00021058-exon-sc0000377-1510915933:82634..82667Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:82266..82402TCONS_00021058-exon-sc0000377-1510915933:82266..82402Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:81927..82061TCONS_00021058-exon-sc0000377-1510915933:81927..82061Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:81368..81486TCONS_00021058-exon-sc0000377-1510915933:81368..81486Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:80493..80770TCONS_00021058-exon-sc0000377-1510915933:80493..80770Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:79956..80157TCONS_00021058-exon-sc0000377-1510915933:79956..80157Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:79559..79688TCONS_00021058-exon-sc0000377-1510915933:79559..79688Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:79093..79232TCONS_00021058-exon-sc0000377-1510915933:79093..79232Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:78674..78834TCONS_00021058-exon-sc0000377-1510915933:78674..78834Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:77036..77067TCONS_00021058-exon-sc0000377-1510915933:77036..77067Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:76714..76786TCONS_00021058-exon-sc0000377-1510915933:76714..76786Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1510915933:76036..76321TCONS_00021058-exon-sc0000377-1510915933:76036..76321Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:90091..90326TCONS_00021058-exon-sc0000377-1491911889:90091..90326Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:82634..82667TCONS_00021058-exon-sc0000377-1491911889:82634..82667Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:82266..82402TCONS_00021058-exon-sc0000377-1491911889:82266..82402Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:81927..82061TCONS_00021058-exon-sc0000377-1491911889:81927..82061Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:81368..81486TCONS_00021058-exon-sc0000377-1491911889:81368..81486Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:80493..80770TCONS_00021058-exon-sc0000377-1491911889:80493..80770Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:79956..80157TCONS_00021058-exon-sc0000377-1491911889:79956..80157Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:79559..79688TCONS_00021058-exon-sc0000377-1491911889:79559..79688Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:79093..79232TCONS_00021058-exon-sc0000377-1491911889:79093..79232Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:78674..78834TCONS_00021058-exon-sc0000377-1491911889:78674..78834Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:77036..77067TCONS_00021058-exon-sc0000377-1491911889:77036..77067Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:76714..76786TCONS_00021058-exon-sc0000377-1491911889:76714..76786Clytia hemisphaericaexon
TCONS_00021058-exon-sc0000377-1491911889:76036..76321TCONS_00021058-exon-sc0000377-1491911889:76036..76321Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000377supercontigsc0000377:76036..90326 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.4123	29.7655	13.5475	13.3168	43.4194	35.1524	40.1226	52.1749	14.4411	20.485	14.3818	22.4081	25.5252	32.4788	22.0336	18.2939	24.6671	18.1734	9.88104	14.7831	25.1375	33.0823	37.4853	37.2353	48.9701	55.7931	20.325	26.2635	18.5629	20.0308
Blast
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BLAST of TCONS_00021058 vs. Swiss-Prot (Human)
Match: EIF3D (Eukaryotic translation initiation factor 3 subunit D OS=Homo sapiens GN=EIF3D PE=1 SV=1)

HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0
Identity = 295/528 (55.87%), Postives = 386/528 (73.11%), Query Frame = 3 
Query:  117 AHFVPPVIQDNSNGWGPCTASNEFKDIPYQPFSKGDRIGKISDWTGQ-FQDR---NKYHSQFAAGNQYAYYHEGDESSFQLVDTSKPQKTAYQKNRQRF--------NNNRMXXXXXXXXXXXAIMMGQTTRVKLQKKNAKNNYYHRRWNDRQQVQKNRAASXXXXXXXXXXXXFDFPRLGKLKLPDIKDPVDLYNCGTMEQYDKAYDRVTTKNERVLEQNSRTFHRVTTTDDPIIRKLT-SKGNVFGTDAIISALMCCTRSVASWDIIVQRVGKKLFFDKRDDSDFDLMSVFETTQEEMKEEG--INSPNNLASEATYINQNFSQQCLKKG-DTLKYDNPNPFAEDDGD--EVASVGYKYRKYDIGNGIDLVVRCEHDAYLKTPAGVQQYYSIKALNEFDPR-ISKIEWRQKLDSQIGSVLAIELKNNSNKIAKWTCNAILASADIMKIGYVSRHTPNDTTRHVILGTQQFKPNMFAQQIALDMDNCWGILRVIVDTCLSLPEGKYLLLKDPNKGVVRLYDIPDNTF 1643
            A F+ PVIQDN +GWGPC    +F+D+PYQPFSKGDR+GK++DWTG  +QD+   NKY SQF  G+QYAY+HE DESSFQLVDT++ QKTAYQ+NR RF         + R   +   Q   ++    +  R++LQKK  K     ++W+  Q+ QK R +SV V+ DW+V EE DFP+L K++  ++ +P D+  CG +E YDKA+DR+TT++E+ L    R FH VTTTDDP+IRKL  ++GNVF TDAI++ LM CTRSV SWDI+VQRVG KLFFDKRD+SDFDL++V ET  E  ++EG   NSP NLA EATYIN NFSQQCL+ G +   + NPNPF EDD D  E+ASV Y+YR++ +G+ IDL+VRCEHD  +    G   + +IK LNE+D R  + ++WRQKLDSQ G+V+A ELKNNS K+A+WTC A+LA ++ +K+GYVSR+   D++RHVILGTQQFKPN FA QI L ++N WGILR ++D C+ L EGKYL+LKDPNK V+R+Y +PD TF
Sbjct:    2 AKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVADWTGATYQDKRYTNKYSSQFGGGSQYAYFHEEDESSFQLVDTARTQKTAYQRNRMRFAQRNLRRDKDRRNMLQFNLQILPKSAKQKERERIRLQKKFQKQFGVRQKWD--QKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLRSIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKLFFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKERYNFPNPNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFINIKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLGYVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLILKDPNKQVIRVYSLPDGTF 527
The following BLAST results are available for this feature:
BLAST of TCONS_00021058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3D0.000e+055.87Eukaryotic translation initiation factor 3 subunit... [more]
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