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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021054 ID=TCONS_00021054|Name=TCONS_00021054|organism=Clytia hemisphaerica|type=transcript|length=813bp
GCACACCTTTCGTACCACCTAACGTACCACCTAGCGTAGCCTCAGCATGT
GAAAAAGTCAAAACCAGATATTTCCAAATCGACGAAGACAATCAACAACT
TTCCTGGGAAGACGCTCAAACGGCTTGCATGGAAAAAAACGCACATTTGA
TCACTGTGAAATCACACAAAGAAAACCTGTGTGCATTTGTGAAATATCAA
ACATCTTTCAGATCGTTAGACGCATTTTGGCTTGGCCTGGTGAACGACTT
tgaagtgaaaaagaaatttcgatGGATTGATAACGACCTGTCGCCTTATC
GAAACTGGTGTGGCGGAGTTACTCCAACTCCTGGCAGTGTAGGTTGTGTC
TTGTTTCGTTTTGGTGACCCTTCTGGTGCAACAACAGGGTGTTTTGAGTT
GGTGGCTGATTGTTCTACACCGCACAGTTTTGTGTGTGAAGCCAATACCC
TTTGTgataaaaatggttttcaaacTCTCGCACAAGTCATGTCGAAAACC
ATTCAAGGAATACAAAACAACTGCAAATCTTGCAGAAAATAGAATCACCC
AGGAAAAATGAAACCCCCCGGTCATGTCACTaattattttttgctatttA
ATAAAATATGGATTCGtcgtattttctttttttctttagcCCAAAGCTCG
TGAAGTAAGCAAGTATCTATTTAGATGAagcatggaggtaataagaaata
gatggagaataaATGACTCGGTAATGGCCCAAGTTATCGttaaattcttt
tatattttcattcaaatcggttttctttgatttactatcattggaagcaa
aaaaatccgaaat Run BLAST on NCBI protein sequence of TCONS_00021054-protein >TCONS_00021054-protein ID=TCONS_00021054-protein|Name=TCONS_00021054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
TPFVPPNVPPSVASACEKVKTRYFQIDEDNQQLSWEDAQTACMEKNAHLI
TVKSHKENLCAFVKYQTSFRSLDAFWLGLVNDFEVKKKFRWIDNDLSPYR
NWCGGVTPTPGSVGCVLFRFGDPSGATTGCFELVADCSTPHSFVCEANTL
CDKNGFQTLAQVMSKTIQGIQNNCKSCRK Run BLAST on NCBI transcript from alignment at sc0000377:36034..37389- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021054 ID=TCONS_00021054|Name=TCONS_00021054|organism=Clytia hemisphaerica|type=transcript|length=1356bp|location=Sequence derived from alignment at sc0000377:36034..37389- (Clytia hemisphaerica)
GCACACCTTTCGTACCACCTAACGTACCACCTAGCGTAGCCTCAGCATGT
GAAAAAGTCAAAACCAGATATTTCCAAATCGACGAAGACAATCAACAACT
TTCCTGGGAAGACGCTCAAACGGCTTGCATGGAAAAAAACGCACATTTGA
TCACTGTGAAATCACACAAAGAAAACCTGTGTGCATTTGTGAAATATCAA
ACATCTTTCAGATCGTTAGAGTAAGTTTCGAATAGTTTCATCGGTGAACG
AAATTCGTGGTTACCTACAGTATCTAAACATCCTGTCTCGCAGTCCTGTT
GGAGCATTTTCCCTGAGTGGGGATGAAACCTTCTATCAAAATCTCAATGG
AGATTCTATTGCTCCTAGCTCAAAGATTTCAGCGAGGATGGTTTTGGGGT
GCAATTTTGATAGAATTTCAAGTGGGGATGAAATCAAACTGTGGTGTATT
TTTTCCACCGGGACGAAATTTTGGTCCAATTTTCCAGCGGGATGGGGGTC
CCAGCGGTCTGTGACACAGGGGTGTATGTAATCAAATCAATATGGAGTAA
AATATTGAATAATGCTATCTAATTATAAAATCTGTTAATTAGCAGGACAT
TATGAAATTCTATTTTCTCAATTTATCTTTAGCGCATTTTGGCTTGGCCT
GGTGAACGACTTTGAAGAGAAAAAGAAATTTCGATGGATTGATAACGACC
TCTCGCCTTATCGAAACTGGTGTGGTGGAGTTACTCCAACNCATTTTCTC
AATTCATCTTTAGCGCATTTTGGCTTGGCCTGGTGAACGACTTTGAAGTG
AAAAAGAAATTTCGATGGATTGATAACGACCTGTCGCCTTATCGAAACTG
GTGTGGCGGAGTTACTCCAACTCCTGGCAGTGTAGGTTGTGTCTTGTTTC
GTTTTGGTGACCCTTCTGGTGCAACAACAGGGTGTTTTGAGTTGGTGGCT
GATTGTTCTACACCGCACAGTTTTGTGTGTGAAGCCAATACCCTTTGTGA
TAAAAATGGTTTTCAAACTCTCGCACAAGTCATGTCGAAAACCATTCAAG
GAATACAAAACAACTGCAAATCTTGCAGAAAATAGAATCACCCAGGAAAA
ATGAAACCCCCCGGTCATGTCACTAATTATTTTTTGCTATTTAATAAAAT
ATGGATTCGTCGTATTTTCTTTTTTTCTTTAGCCCAAAGCTCGTGAAGTA
AGCAAGTATCTATTTAGATGAAGCATGGAGGTAATAAGAAATAGATGGAG
AATAAATGACTCGGTAATGGCCCAAGTTATCGTTAAATTCTTTTATATTT
TCATTCAAATCGGTTTTCTTTGATTTACTATCATTGGAAGCAAAAAAATC
CGAAAT Coding sequence (CDS) from alignment at sc0000377:36034..37389- >TCONS_00021054 ID=TCONS_00021054|Name=TCONS_00021054|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000377:36034..37389- (Clytia hemisphaerica)
CGCATTTTGGCTTGGCCTGGTGAACGACTTTGAAGTGAAAAAGAAATTTC
GATGGATTGATAACGACCTGTCGCCTTATCGAAACTGGTGTGGCGGAGTT
ACTCCAACTCCTGGCAGTGTAGGTTGTGTCTTGTTTCGTTTTGGTGACCC
TTCTGGTGCAACAACAGGGTGTTTTGAGTTGGTGGCTGATTGTTCTACAC
CGCACAGTTTTGTGTGTGAAGCCAATACCCTTTGTGATAAAAATGGTTTT
CAAACTCTCGCACAAGTCATGTCGAAAACCATTCAAGGAATACAAAACAA
CTGCAAATCTTGCAGAAAATAGACACCTTTCGTACCACCTAACGTACCAC
CTAGCGTAGCCTCAGCATGTGAAAAAGTCAAAACCAGATATTTCCAAATC
GACGAAGACAATCAACAACTTTCCTGGGAAGACGCTCAAACGGCTTGCAT
GGAAAAAAACGCACATTTGATCACTGTGAAATCACACAAAGAAAACCTGT
GTGCATTTGTGAAATATCAAACATCTTTCAGATCGTTAGACGCATTTTGG
CTTGGCCTGGTGAACGACTTTGAAGTGAAAAAGAAATTTCGATGGATTGA
TAACGACCTGTCGCCTTATCGAAACTGGTGTGGCGGAGTTACTCCAACTC
CTGGCAGTGTAGGTTGTGTCTTGTTTCGTTTTGGTGACCCTTCTGGTGCA
ACAACAGGGTGTTTTGAGTTGGTGGCTGATTGTTCTACACCGCACAGTTT
TGTGTGTGAAGCCAATACCCTTTGTGATAAAAATGGTTTTCAAACTCTCG
CACAAGTCATGTCGAAAACCATTCAAGGAATACAAAACAACTGCAAATCT
TGCAGAAAATAGACACCTTTCGTACCACCTAACGTACCACCTAGCGTAGC
CTCAGCATGTGAAAAAGTCAAAACCAGATATTTCCAAATCGACGAAGACA
ATCAACAACTTTCCTGGGAAGACGCTCAAACGGCTTGCATGGAAAAAAAC
GCACATTTGATCACTGTGAAATCACACAAAGAAAACCTGTGTGCATTTGT
GAAATATCAAACATCTTTCAGATCGTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021054-exon-sc0000377-1575043694:37170..37389 | TCONS_00021054-exon-sc0000377-1575043694:37170..37389 | Clytia hemisphaerica | exon |
| TCONS_00021054-exon-sc0000377-1575043694:36034..36626 | TCONS_00021054-exon-sc0000377-1575043694:36034..36626 | Clytia hemisphaerica | exon |
| TCONS_00021054-exon-sc0000377-1510915933:37170..37389 | TCONS_00021054-exon-sc0000377-1510915933:37170..37389 | Clytia hemisphaerica | exon |
| TCONS_00021054-exon-sc0000377-1510915933:36034..36626 | TCONS_00021054-exon-sc0000377-1510915933:36034..36626 | Clytia hemisphaerica | exon |
| TCONS_00021054-exon-sc0000377-1491911889:37170..37389 | TCONS_00021054-exon-sc0000377-1491911889:37170..37389 | Clytia hemisphaerica | exon |
| TCONS_00021054-exon-sc0000377-1491911889:36034..36626 | TCONS_00021054-exon-sc0000377-1491911889:36034..36626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000377 | supercontig | sc0000377:36034..37389 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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