TCONS_00021023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021023
Unique NameTCONS_00021023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021023 ID=TCONS_00021023|Name=TCONS_00021023|organism=Clytia hemisphaerica|type=transcript|length=570bp
CTGGCGGGGTTTTTTCCTTGCAAGCTTTTGACTGCATATGTCTTTTCAGC
CCTCCAGTGGTTTTGCAAATTTGACcacatttttcacattttatagTTGT
TGAGATCTCTGAGTCTTGGCTGGGATGCCATTTCTCCTGTCTTCTCGTAA
AACACCAGGTCTTGATGTATTCTAGACTCTTCACTCTGTCGGAGAGACGC
GTCTACCTCCTGGCTGCAGAGGATTTTTCTTCTGGCTATATATTCGAGCC
AGTCAGTCTATTTCAACTGACCTTCTGCACCCTTGACTACAGGCGTCTTT
TCTTCGAGGTAATTGTTCGCCCTCTCACTCCGGCTACCTTGCAGCGGCAG
TCTTTTCTTCAGGATTTTTCGACCTTATCTAGCACCTTGACCTGGGTTGA
GTTGGTTGAGTTTCGTTGTTTTTGTGTTGAAACGGTTATTAATTTGTAGC
TTACAGTAAGTAGTTTCCTTGTCAAGCAACTTTGTAAGAGAATCAGCTTT
CTTTTGACTTTACAATCGCGTTCTTCTTTACATGTTTACTTCTGCGACAT
TTTTACTTCCGCCATCTTGA
Run BLAST on NCBI

transcript from alignment at sc0000376:219843..220412

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021023 ID=TCONS_00021023|Name=TCONS_00021023|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at sc0000376:219843..220412 (Clytia hemisphaerica)
TCAAGATGGCGGAAGTAAAAATGTCGCAGAAGTAAACATGTAAAGAAGAA
CGCGATTGTAAAGTCAAAAGAAAGCTGATTCTCTTACAAAGTTGCTTGAC
AAGGAAACTACTTACTGTAAGCTACAAATTAATAACCGTTTCAACACAAA
AACAACGAAACTCAACCAACTCAACCCAGGTCAAGGTGCTAGATAAGGTC
GAAAAATCCTGAAGAAAAGACTGCCGCTGCAAGGTAGCCGGAGTGAGAGG
GCGAACAATTACCTCGAAGAAAAGACGCCTGTAGTCAAGGGTGCAGAAGG
TCAGTTGAAATAGACTGACTGGCTCGAATATATAGCCAGAAGAAAAATCC
TCTGCAGCCAGGAGGTAGACGCGTCTCTCCGACAGAGTGAAGAGTCTAGA
ATACATCAAGACCTGGTGTTTTACGAGAAGACAGGAGAAATGGCATCCCA
GCCAAGACTCAGAGATCTCAACAActataaaatgtgaaaaatgtgGTCAA
ATTTGCAAAACCACTGGAGGGCTGAAAAGACATATGCAGTCAAAAGCTTG
CAAGGAAAAAACCCCGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011794XLOC_011794Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021023-exon-sc0000376-1491911889:219843..220412TCONS_00021023-exon-sc0000376-1491911889:219843..220412Clytia hemisphaericaexon
TCONS_00021023-exon-sc0000376-1510915933:219843..220412TCONS_00021023-exon-sc0000376-1510915933:219843..220412Clytia hemisphaericaexon
TCONS_00021023-exon-sc0000376-1575043694:219843..220412TCONS_00021023-exon-sc0000376-1575043694:219843..220412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:219843..220412 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.202521	0.350289	0.217727	0.147041	0.347968	0.12635	0.24584	0	0.307741	0.0995671	0.299361	0.326802	0.141885	0.136868	0.197936	0.310111	0	0	0	0.140493	0.451515	0.112682	0	0.57311	0.33039	0	0.176715	0	0.349784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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