TCONS_00021015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021015
Unique NameTCONS_00021015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021015 ID=TCONS_00021015|Name=TCONS_00021015|organism=Clytia hemisphaerica|type=transcript|length=384bp
catttttgcataaaatgaaaAAGGGATCTTTTTAGTAATAATGTTAGGGG
CATTAACTGAAATCAGGAGTTTCGGTAGCTCAAATACTTGGTCTTTAAGA
AATAAACTTACAGNAATGAAAAGTTGCATcatatttagaaaatttcatcC
CAAATCTGTATGAAAATcaacctgggcagattctctAAAAAAGCCATGGC
CTATAGGGTGAATACACGCCACTCCACACGGAGTATCAGAATCTACTCGG
AGGAATTTCTTTATTGTTTattatgttttttgttttttttgttttcaatt
gttttcaagaatttattcTTCTAGACCATTGAGCATAAACATGTTTTCTC
TTCGGTTTGAACCAGACTCTATGTCTATTTGCTG
Run BLAST on NCBI

transcript from alignment at sc0000376:25472..25855

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021015 ID=TCONS_00021015|Name=TCONS_00021015|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at sc0000376:25472..25855 (Clytia hemisphaerica)
CAGCAAATAGACATAGAGTCTGGTTCAAACCGAAGAGAAAACATGTTTAT
GCTCAATGGTCTAGAAgaataaattcttgaaaacaattgaaaacaaaaaa
aacaaaaaacataatAAACAATAAAGAAATTCCTCCGAGTAGATTCTGAT
ACTCCGTGTGGAGTGGCGTGTATTCACCCTATAGGCCATGGCTTTTTTag
agaatctgcccaggttgATTTTCATACAGATTTGGgatgaaattttctaa
atatgATGCAACTTTTCATTNCTGTAAGTTTATTTCTTAAAGACCAAGTA
TTTGAGCTACCGAAACTCCTGATTTCAGTTAATGCCCCTAACATTATTAC
TAAAAAGATCCCTTtttcattttatgcaaaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011786XLOC_011786Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021015-exon-sc0000376-1491911889:25472..25855TCONS_00021015-exon-sc0000376-1491911889:25472..25855Clytia hemisphaericaexon
TCONS_00021015-exon-sc0000376-1510915933:25472..25855TCONS_00021015-exon-sc0000376-1510915933:25472..25855Clytia hemisphaericaexon
TCONS_00021015-exon-sc0000376-1575043694:25472..25855TCONS_00021015-exon-sc0000376-1575043694:25472..25855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:25472..25855 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0753284	0.389076	0	0.395455	1.07509	0.393944	1.02414	0.677382	0	0	1.15691	1.05003	1.41116	0.198836	0.389835	1.25251	0	0	0	6.58279e-07	0	0	0	1.34722	1.61247	1.11328	0.433537	0	0.491901	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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